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Benthic Diatoms (benthic + diatom)
Selected AbstractsUSING QUANTITATIVE PCR TO DETERMINE THE DISTRIBUTION OF A SEMICRYPTIC BENTHIC DIATOM, NAVICULA PHYLLEPTA (BACILLARIOPHYCEAE),JOURNAL OF PHYCOLOGY, Issue 5 2006Véronique Créach Evidence has accumulated during the last decade showing that many established diatom morpho-species actually consist of several semicryptic or truly cryptic species. As these species are difficult or even impossible to differentiate by microscopic analysis, there is virtually no information on how they behave in natural environments. In this study, we developed a quantitative real-time PCR (qPCR) assay using TaqMan probes® targeted to the internal transcribed spacer 1 (ITS1) to assess the spatial distribution and seasonal dynamics of an important component of the microphytobenthos of intertidal sediments. Navicula phyllepta Kützing is a brackish-marine morpho-species with a cosmopolitan distribution. Axenic clones of this species were isolated from natural assemblages of benthic diatoms at different intertidal stations in the Westerschelde estuary (The Netherlands). At least two distinct semicryptic species of N. phyllepta were present, as shown by differences in the quantity of DNA per cell, the ITS1 sequences and the copy number of ITS per cell. DNA and chl a concentrations extracted from sediment surface samples were closely correlated, showing that the DNA used for subsequent analysis mostly belonged to the microalgal community. The results of real-time qPCR from sites throughout the estuary and over several seasons agreed well with microscopic counts. Additionally, the seasonal pattern of the two forms of N. phyllepta showed an overlapping, but unique distribution along the estuary. [source] Ecological relationships between stream communities and spatial scale: implications for designing catchment-level monitoring programmesFRESHWATER BIOLOGY, Issue 5 2007RICHARD K. JOHNSON Summary 1. Stream communities are structured by factors acting over multiple spatial and temporal scales. Identifying what factors are driving spatial patterns in stream communities is a central aim of ecology. 2. Here we used two large European data sets of fish, invertebrates, macrophytes, benthic diatoms and environmental data in two stream groups (lowland and mountain) to determine the importance of variables at different spatial scales (geographical, regional, local) on community structure. 3. Both geographical position and ecoregion were selected first in canonical correspondence analysis (CCA), clearly showing the broad spatial gradients covered in the data set. Secondary predictors (after accounting for spatial and/or ecoregion effects) were similar between stream groups and among the four organism groups. In particular, conductivity and N concentration were strong predictors reflecting catchment land use. 4. Using partial CCA, we assessed the individual importance of the three spatial scales on the community structure of the four organism groups in the two stream groups. The majority of among-site variability (22,29%) was accounted for by local scale variables (e.g. water chemistry and substratum type), with regional and spatial variables accounting 11,13% and 5,6%, respectively. Our findings indicate that the four organism groups are responding similarly to the different levels of spatial scale, implying much redundancy which should be consider when implementing studies of bioassessment. [source] Seasonal response of nutrients to reduced phosphorus loading in 12 Danish lakesFRESHWATER BIOLOGY, Issue 10 2005MARTIN SØNDERGAARD Summary 1.,Concentrations of phosphorus, nitrogen and silica and alkalinity were monitored in eight shallow and four deep Danish lakes for 13 years following a phosphorus loading reduction. The aim was to elucidate the seasonal changes in nutrient concentrations during recovery. Samples were taken biweekly during summer and monthly during winter. 2.,Overall, the most substantive changes in lake water concentrations were seen in the early phase of recovery. However, phosphorus continued to decline during summer as long as 10 years after the loading reduction, indicating a significant, albeit slow, decline in internal loading. 3.,Shallow and deep lakes responded differently to reduced loading. In shallow lakes the internal phosphorus release declined significantly in spring, early summer and autumn, and only non-significantly so in July and August. In contrast, in deep lakes the largest reduction occurred from May to August. This difference may reflect the much stronger benthic pelagic-coupling and the lack of stratification in shallow lakes. 4.,Nitrogen only showed minor changes during the recovery period, while alkalinity increased in late summer, probably conditioned by the reduced primary production, as also indicated by the lower pH. Silica tended to decline in winter and spring during the study period, probably reflecting a reduced release of silica from the sediment because of enhanced uptake by benthic diatoms following the improved water transparency. 5.,These results clearly indicate that internal loading of phosphorus can delay lake recovery for many years after phosphorus loading reduction, and that lake morphometry (i.e. deep versus shallow basins) influences the patterns of change in nutrient concentrations on both a seasonal and interannual basis. [source] Distribution of benthic diatoms in U.S. rivers in relation to conductivity and ionic compositionFRESHWATER BIOLOGY, Issue 8 2003Marina Potapova Summary 1We quantified the relationships between diatom relative abundance and water conductivity and ionic composition, using a dataset of 3239 benthic diatom samples collected from 1109 river sites throughout the U.S.A. [U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program dataset]. This dataset provided a unique opportunity to explore the autecology of freshwater diatoms over a broad range of environmental conditions. 2Conductivity ranged from 10 to 14 500 ,S cm,1, but most of the rivers had moderate conductivity (interquartile range 180,618 ,S cm,1). Calcium and bicarbonate were the dominant ions. Ionic composition, however, varied greatly because of the influence of natural and anthropogenic factors. 3Canonical correspondence analysis (CCA) and Monte Carlo permutation tests showed that conductivity and abundances of major ions (HCO + CO, Cl,, SO, Ca2+, Mg2+, Na+, K+) all explained a statistically significant amount of the variation in assemblage composition of benthic diatoms. Concentrations of HCO + CO and Ca2+ were the most significant sources of environmental variance. 4The CCA showed that the gradient of ionic composition explaining most variation in diatom assemblage structure ranged from waters dominated by Ca2+ and HCO + CO to waters with higher proportions of Na+, K+, and Cl,. The CCA also revealed that the distributions of some diatoms correlated strongly with proportions of individual cations and anions, and with the ratio of monovalent to divalent cations. 5We present species indicator values (optima) for conductivity, major ions and proportions of those ions. We also identify diatom taxa characteristic of specific major-ion chemistries. These species optima may be useful in future interpretations of diatom ecology and as indicator values in water-quality assessment. [source] USING QUANTITATIVE PCR TO DETERMINE THE DISTRIBUTION OF A SEMICRYPTIC BENTHIC DIATOM, NAVICULA PHYLLEPTA (BACILLARIOPHYCEAE),JOURNAL OF PHYCOLOGY, Issue 5 2006Véronique Créach Evidence has accumulated during the last decade showing that many established diatom morpho-species actually consist of several semicryptic or truly cryptic species. As these species are difficult or even impossible to differentiate by microscopic analysis, there is virtually no information on how they behave in natural environments. In this study, we developed a quantitative real-time PCR (qPCR) assay using TaqMan probes® targeted to the internal transcribed spacer 1 (ITS1) to assess the spatial distribution and seasonal dynamics of an important component of the microphytobenthos of intertidal sediments. Navicula phyllepta Kützing is a brackish-marine morpho-species with a cosmopolitan distribution. Axenic clones of this species were isolated from natural assemblages of benthic diatoms at different intertidal stations in the Westerschelde estuary (The Netherlands). At least two distinct semicryptic species of N. phyllepta were present, as shown by differences in the quantity of DNA per cell, the ITS1 sequences and the copy number of ITS per cell. DNA and chl a concentrations extracted from sediment surface samples were closely correlated, showing that the DNA used for subsequent analysis mostly belonged to the microalgal community. The results of real-time qPCR from sites throughout the estuary and over several seasons agreed well with microscopic counts. Additionally, the seasonal pattern of the two forms of N. phyllepta showed an overlapping, but unique distribution along the estuary. [source] PROBING THE SURFACE OF LIVING DIATOMS WITH ATOMIC FORCE MICROSCOPY: THE NANOSTRUCTURE AND NANOMECHANICAL PROPERTIES OF THE MUCILAGE LAYER,JOURNAL OF PHYCOLOGY, Issue 4 2003Michael J. Higgins Atomic force microscopy (AFM) is used to investigate the topography and material properties of the mucilage layer of live cells of three benthic diatoms, the marine species Crasepdostauros australis E. J. Cox and Nitzschia navis-varingica Lundholm et Moestrup and the freshwater species Pinnularia viridis (Nitzsch) Ehrenberg. Contrary to previous studies, we show that this surface mucilage layer displays unique nanostructural features. In C. australis, tapping mode images revealed a soft mucilage layer encasing the silica cell wall, consisting of a smooth flat surface that was interrupted by regions with groove-like indentations, whereas force measurements revealed the adhesive binding of polymer chains. The elastic responses of these polymer chains, as they were stretched during force measurements, were successfully fitted to the worm-like chain model, indicating the stretching of mostly single macromolecules from which quantitative information was extracted. In P. viridis, tapping mode images of cells revealed a mucilage layer that had the appearance of densely packed spheres, whereas force measurements exhibited no adhesion. In N. navis-varingica, tapping mode images of the outer surface of this cell in the girdle region revealed the absence of a mucilage layer, in contrast to the other two species. In addition to these topographic and adhesion studies, the first quantitative measurement of the elastic properties of microalgal extracellular polymeric substance is presented and reveals significant spatial variation in the C. australis and P. viridis mucilage layers. This study highlights the capacity of AFM in elucidating the topography and mechanical properties of hydrated microalgal extracellular polymeric substance on a nanoscale. [source] CURRENT VARIABILITY SHAPES MORPHOLOGICAL COMPLEXITY IN COLONIAL STREAM DIATOMSJOURNAL OF PHYCOLOGY, Issue 2001Article first published online: 24 SEP 200 Passy, S. I.1,2 & Freehafer, D.2 1Department of Biology, Rensselaer Polytechnic Institute, Troy, NY 12180; 2US Geological Survey, 425 Jordan Rd., Troy, NY 12180-8349 USA On August 27, 1999 diatoms were sampled, and current velocity was measured at 81 locations on a regular square sampling grid in an unshaded, cobble-bottom reach of White Creek, NY. The grid had an extent of 16 m2, interval, the distance between neighboring sampling points, of 0.5 m, and grain size, the size of the elementary sampling unit, of 0.01 m2. Six of the seven dominant benthic diatoms were colonial forms, including Diatoma vulgaris, Fragilaria capucina, F. crotonensis, Gomphoneis minuta, Melosira varians, and Synedra ulna. Their morphology and distribution were investigated from the perspective of fractal geometry and stream ecology, respectively. Fractal dimension of diatom colonies, indicative of their shape complexity, ranged from 1.06 to 1.54, demonstrating vast morphological variation from simple geometric shapes to complex outlines. The relative abundance of the six diatoms was regressed against current regime, which ranged from 0.03 to 0.66 m, s -1. All regression models were significant at P < 0.05 and explained between 55% and 94% of the variation in diatom distribution. The diatom niche breadth, i.e. the amount of environmental variability a species can tolerate, was defined from these models and showed substantial variation, from 5 to 14. The regression model of fractal dimension against niche breadth was significant and explained 76% of colonial shape variation, revealing a strong relationship between diatom colonial complexity and habitat variability. This finding suggests that environmental variability could create highly complex colonial morphologies in benthic diatoms as an evo-lutionary strategy for survival in unpredictable environments. [source] Culture of benthic diatoms and effect of dissolved organic carbon on metamorphosis of the ,white sea urchin Lytechinus pictus (Verrill)'AQUACULTURE RESEARCH, Issue 4 2010A Salas-Garza Abstract The effect of biofilms of the benthic diatom Navicula incerta and of the dissolved organic carbon (DOC) they produce was evaluated on the growth and survival of Lytechinus pictus postlarvae during metamorphosis. In each container, 300 postlarvae were exposed to biofilms beginning on days 1, 3 and 6 of metamorphosis, using three replicates and a blank containing only filtered water. The experiments were run for 15 and 18 days in 500-mL containers with daily water changes. We measured 30 postlarvae from each container and counted all organisms on days 1, 3, 9 and 15; DOC was quantified on days 3, 6 and 9. A second experiment was conducted to evaluate whether the presence of diatoms or the DOC they produced improved postlarval development. Five assays were performed in triplicate: a positive control with biofilms, a negative control with filtered water and three treatments with DOC-enriched water from a N. incerta culture supplied on days 1, 4 and 8. In both experiments, postlarvae attained the largest size and highest survival in the treatments with the biofilm. The results indicate that the increase in postlarval size and survival was due to the DOC produced by the diatoms and not by their presence alone. [source] Carbon-nitrogen-phosphorus removal and biofilm growth characteristics in an integrated wastewater treatment system involving a rotating biological contactorASIA-PACIFIC JOURNAL OF CHEMICAL ENGINEERING, Issue 5 2009Angelo H. Cabije Abstract A new rotating biological contactor-packed media technology (RBC-PMT) is locally innovated using light polyethylene Amazon screen material as disc media. A single-stage co-current fed of this type, which is connected with a series of equalization tanks as an integrated wastewater treatment system (IWWTS), showed good carbon-nitrogen-phosphorus (C-N-P) removal and unveiled biofilm growth characteristics noteworthy for treating pollutants in wastewater. The equalization tanks approached facultative anaerobic conditions while the RBC-PMT exhibited a completely aerated system, both with a slightly alkaline pH, whose temperatures are ranging from 21 to 24 °C, and both performed as biological nutrient removal systems. The combined nutrient removal efficiency at high organic loading rate (HOLR) and low organic loading rate (LOLR) showed fair chemical oxygen demand (COD) removal at 65.68 and 67.89%, respectively. Nitrate-nitrogen removal demonstrated good removal at 79.17% at HOLR and 83.43% at LOLR. There was excellent phosphate-phosphorus removal determined at 91.64 and 94.35% at high and low OLRs, respectively. This indicates that increasing the organic loading rate decreases the C-N-P removal in the IWWTS. Biofilm growth was characterized by the selection and survival of microorganisms present under aerobic environmental conditions in the RBC-PMT system and their respective metabolism in removing C-N-P substrates. Yeasts, coliform bacteria particularly E. coli, Cyanobacteria, and benthic diatoms were dominant microorganisms found upon oil-immersion microscopy. Protozoans and algae including Chlorococcum, Chlorella, Diatoma, Tribonema, Oscillatoria, Euglena, and other motile rotifiers were also dominantly found in the biofilm samples. Biofilm growth is observed and its average thickness was measured to be 7.71 µm at HOLR and 2.81 µm at LOLR. Thicker biofilm at HOLR has caused the reduced rate of diffusion of the microorganisms and their metabolic products as manifested by the low C-N-P removal during HOLR. Copyright © 2009 Curtin University of Technology and John Wiley & Sons, Ltd. [source] Identification of the food sources of sympatric ghost shrimp (Trypaea australiensis) and soldier crab (Mictyris longicarpus) populations using a lipid biomarker, dual stable isotope approachAUSTRAL ECOLOGY, Issue 8 2009NICOLAS SPILMONT Abstract Fatty acids (FAs) profiles and stable isotope signatures of the ghost shrimp, Trypaea australiensis and the soldier crab, Mictyris longicarpus were determined at an unvegetated sandbank of Southport (Gold Coast, Queensland, Australia), in November 2005 and February 2006. Additionally, the FAs composition of the faeces and feeding pellets of M. longicarpus and the surface sediment at the study site were also analysed. Trypaea australiensis was found to selectively feed principally on benthic diatoms, as revealed by the high contribution of the marker lipid (20:5 (n-3)) to tissue total FAs and the ,13C and ,15N isotopic signatures of shrimp tissues. Although the diet of T. australiensis did not change between the two sampling periods, the shrimps appeared to reduce their feeding activity in summer, presumably in relation to a restricted metabolism, as revealed by a decrease in the contribution of the microalgal markers in their tissues. The FAs composition of the tissues of the soldier crab indicated that bacteria and diatoms constituted the base of its diet (contributions of branched 15:0 and 17:0, 18:1 (n-7) and 20:5 (n-3)). However, the isotopic signatures of the crabs suggested that meiofauna may represent an intermediate link between the crab and these micro-organisms. [source] | ||||||||||