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Volume Calculations (volume + calculation)
Selected AbstractsThe micro-topography of the wetlands of the Okavango Delta, BotswanaEARTH SURFACE PROCESSES AND LANDFORMS, Issue 1 2005T. Gumbricht Abstract The surface of the 40 000 km2 Okavango alluvial fan is remarkably smooth, and almost everywhere lies within two to three metres of a perfectly smooth theoretical surface. Deviations from this perfect surface give rise to islands in the Okavango wetlands. This micro-topography was mapped by assigning empirical elevations to remotely sensed vegetation community classes, based on the observation that vegetation is very sensitive to small, local differences in elevation. Even though empirical, the method produces fairly accurate results. The technique allows estimation of depths of inundation and therefore will be applicable even when high resolution radar altimetry becomes available. The micro-topography has arisen as a result of clastic sedimentation in distributary channels, which produces local relief of less than two metres, and more importantly as a result of chemical precipitation in island soils, which produces similar local relief. The micro-topography is, therefore, an expression of the non-random sedimentation taking place on the fan. Volume calculations of islands extracted from the micro-topography, combined with estimates of current sediment in,ux, suggest that the land surface of the wetland may only be a few tens of thousands of years old. Constant switching of water distribution, driven by local aggradation, has distributed sediment widely. Mass balance calculations suggest that over a period of c. 150 000 years all of the fan would at one time or other have been inundated, and thus subject to sedimentation. Coalescing of islands over time results in net aggradation of the fan surface. The amount of vertical aggradation on islands and in channels is restricted by the water depth. Restricted vertical relief, in turn, maximizes the distribution of water, limiting its average depth. Aggradation in the permanent swamps occurs predominantly by clastic sedimentation. Rates of aggradation here are very similar to those in the seasonal swamps, maintaining the overall gradient, possibly because of the operation of a feedback loop between the two. The limited amount of local aggradation arising from both clastic and chemical sedimentation, combined with constant changes in water distribution, has resulted in a near-perfect conical surface over the fan. In addition to providing information on sedimentary processes, the micro-topography has several useful hydrological applications. Copyright © 2004 John Wiley & Sons, Ltd. [source] Accurate calculation of the density of proteinsACTA CRYSTALLOGRAPHICA SECTION D, Issue 7 2000Michael L. Quillin On the basis of theoretical calculations, Andersson & Hovmöller have recently suggested that the long-established value of 1.35,g,cm,3 for the mean density of proteins should be revised to 1.22,g,cm,3[Andersson & Hovmller (2000), Acta Cryst. D56, 789790]. To substantiate their assertion, these authors used the Voronoi algorithm to calculate the mean atomic volume for 30 representative protein structures. The Voronoi procedure requires that atoms of interest be bounded on all sides by other atoms. Volume calculations for surface atoms that are not surrounded or are only sparsely surrounded by other atoms either are not possible or may be unreliable. In an attempt to circumvent this problem, Andersson & Hovmöller rejected atoms with calculated volumes that were indeterminate or were greater than 50,Å3. In the present study, it is shown that this criterion is not sufficiently restrictive to ensure accurate volume determinations. When only strictly buried atoms are included in the volume calculations using the Voronoi algorithm, the mean density is found to be 1.47 ± 0.05,g,cm,3. In addition, an alternate procedure based on the Connolly algorithm that permits all protein atoms to be included in volume calculations gives 1.43 ± 0.03,g,cm,3 for the mean density of the same set of proteins. The latter two calculated values are mutually consistent and are in better agreement with the experimental value. [source] Use of a curved-array transducer to reduce interobserver variation in sonographic measurement of thyroid volume in healthy adultsJOURNAL OF CLINICAL ULTRASOUND, Issue 4 2003Els Y. Peeters MD Abstract Purpose Sonographic calculation of thyroid volume is used in the diagnosis and follow-up of thyroid diseases. Since the calculated volume of thyroid lobes is highly influenced by the longest (ie, craniocaudal) diameter, we examined whether using a curved-array transducer as opposed to a linear-array transducer to measure the craniocaudal diameter would reduce interobserver variation. Methods Three sonographers with different levels of expertise each used a 5,12-MHz linear-array transducer and a 2,5-MHz curved-array transducer to measure the craniocaudal diameter of both thyroid lobes of 25 healthy volunteers. On the basis of these measurements, thyroid lobe volumes were calculated. Single-factor analysis of variance was used to evaluate the interobserver variations between the measurements made by all 3 observers as well as between measurements taken by pairs of observers. A p value of less than 0.05 was considered significant. Results Using the linear-array transducer to measure the craniocaudal diameter resulted in significant interobserver variation in thyroid volume calculation (p = 0.02), whereas using the convex-array transducer did not. Using either transducer resulted in a highly significant interobserver variation in measurements of the craniocaudal diameter, although the variation was far more pronounced for measurements made with the linear-array transducer (p = 0.0005) than for those made with the curved-array transducer (p = 0.04). For both transducers, the interobserver variations were most pronounced between the most and the least experienced sonographers. Conclusions To avoid significant interobserver variation in calculating thyroid lobe volume, we recommend using a curved-array transducer to measure the craniocaudal diameter of the thyroid lobes. © 2003 Wiley Periodicals, Inc. J Clin Ultrasound 31:189,193, 2003 [source] Three-dimensional sonographic volume measurement of the fetal spleenJOURNAL OF OBSTETRICS AND GYNAECOLOGY RESEARCH (ELECTRONIC), Issue 5 2007Toshiyuki Hata Abstract Aim:, The objective of this longitudinal study was to evaluate the growth of the fetal spleen in normal pregnancies, using three-dimensional ultrasound. Methods:, Three-dimensional sonographic examinations were performed on 14 appropriate-for-gestational-age fetuses. Fetal splenic volume was measured every 2,3 weeks after 20 weeks of gestational age until delivery. Results:, Curvilinear relationships were found between the gestational age and splenic volume (R2 = 80.2%, P < 0.0001), and normal ranges of splenic volume measurements for estimating the growth of the fetal spleen during normal pregnancy were generated. We found that the splenic volume calculation based on the equation for the volume of the ellipsoid by conventional two-dimensional ultrasound in previous investigations is about twice as large as that using three-dimensional ultrasound in our study, whereas the present data described in this study is quite comparable with previous data from an autopsy series. Conclusion:, Our findings suggest that the standard curve for the fetal splenic volume using three-dimensional ultrasound provides a superior means for evaluating the normal splenic growth in the fetus and for identifying splenic abnormalities in utero. However, the data and its interpretation in our study should be taken with some degree of caution because of the small number of subjects studied. Further studies involving a larger sample size would be needed to confirm these findings. [source] AN AEOLIANITE IN THE UPPER DALAN MEMBER (KHUFF FORMATION), SOUTH PARS FIELD, IRANJOURNAL OF PETROLEUM GEOLOGY, Issue 2 2010G. Frébourg A laterally continuous, 3m thick oolitic grainstone has been studied in cores from two wells from the South Pars field (offshore Iran). This high porosity but low permeability interval occurs at the top of the gas-bearing succession in the Permian Upper Dalan Member, and is equivalent to the informally-defined K4 unit of the Khuff Formation. This interval can easily be traced between the wells and overlies high-energy marine deposits. It is composed of oomouldic, fine-grained azooic grainstones with cm-thick coarser-grained layers. Horizontal to oblique lamination or steep foresets were observed together with pinstripe lamination. Petrographic observations indicate a clean oomouldic grainstone with very thin chitonic rims associated with pedogenetic imprints as first-generation cements. Later cements include early vadose meniscus and pendant cements in coarser-grained layers and pseudophreatic cements in the finer-grained material with a tighter pore network, prior to ooid dissolution. Rhizoliths were observed in cores and thin-sections. The pedogenic imprints and the early vadose cementation, both related to emergence, as well as the presence of pinstripe lamination, suggest an aeolian depositional setting. This interval is the first aeolianite recorded within the Khuff Formation or equivalent units, and the first hydrocarbon-bearing carbonate aeolianite described in a hydrocarbon-producing unit. The discovery of aeolianites has important implications for regional sequence-stratigraphic interpretations and reservoir volume calculations. These deposits do not conform to classic subaqueous sequence stratigraphy and do not record eustatic variations in the associated marine basin. Their recognition is crucial for well-to-well correlations. [source] Accurate calculation of the density of proteinsACTA CRYSTALLOGRAPHICA SECTION D, Issue 7 2000Michael L. Quillin On the basis of theoretical calculations, Andersson & Hovmöller have recently suggested that the long-established value of 1.35,g,cm,3 for the mean density of proteins should be revised to 1.22,g,cm,3[Andersson & Hovmller (2000), Acta Cryst. D56, 789790]. To substantiate their assertion, these authors used the Voronoi algorithm to calculate the mean atomic volume for 30 representative protein structures. The Voronoi procedure requires that atoms of interest be bounded on all sides by other atoms. Volume calculations for surface atoms that are not surrounded or are only sparsely surrounded by other atoms either are not possible or may be unreliable. In an attempt to circumvent this problem, Andersson & Hovmöller rejected atoms with calculated volumes that were indeterminate or were greater than 50,Å3. In the present study, it is shown that this criterion is not sufficiently restrictive to ensure accurate volume determinations. When only strictly buried atoms are included in the volume calculations using the Voronoi algorithm, the mean density is found to be 1.47 ± 0.05,g,cm,3. In addition, an alternate procedure based on the Connolly algorithm that permits all protein atoms to be included in volume calculations gives 1.43 ± 0.03,g,cm,3 for the mean density of the same set of proteins. The latter two calculated values are mutually consistent and are in better agreement with the experimental value. [source] Crystallization and preliminary X-ray diffraction analysis of the N-terminal domain of Mrs2, a magnesium ion transporter from yeast inner mitochondrial membraneACTA CRYSTALLOGRAPHICA SECTION F (ELECTRONIC), Issue 6 2010Muhammad Bashir Khan Mrs2 transporters are distantly related to the major bacterial Mg2+ transporter CorA and to Alr1, which is found in the plasma membranes of lower eukaryotes. Common features of all Mrs2 proteins are the presence of an N-terminal soluble domain followed by two adjacent transmembrane helices (TM1 and TM2) near the C-terminus and of the highly conserved F/Y-G-M-N sequence motif at the end of TM1. The inner mitochondrial domain of the Mrs2 from Saccharomyces cerevisae was overexpressed, purified and crystallized in two different crystal forms corresponding to an orthorhombic and a hexagonal space group. The crystals diffracted X-rays to 1.83 and 4.16,Å resolution, respectively. Matthews volume calculations suggested the presence of one molecule per asymmetric unit in the orthorhombic crystal form and of five or six molecules per asymmetric unit in the hexagonal crystal form. The phase problem was solved for the orthorhombic form by a single-wavelength anomalous dispersion experiment exploiting the sulfur anomalous signal. [source] | ||||||||||||||||