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UPGMA Analyses (upgma + analysis)
Selected Abstracts59 Utility of the periphyton index of biotic integrity (PIBI) as an indicator of acid mine drainage impacts in southeastern ohioJOURNAL OF PHYCOLOGY, Issue 2003S. E. Hamsher In the Appalachian region, numerous streams are polluted with acid mine drainage (AMD). These waters are sulfate-rich with elevated amounts of total acidity, low pH, and high levels of dissolved metals. Biotic multimetric indices, such as the Periphyton Index of Biotic Integrity (PIBI) have been employed to determine water quality across a variety of environmental conditions and may prove useful for AMD impacts. This study was initiated (1) to evaluate the PIBI for distinguishing AMD impact in streams and (2) to examine whether PIBI scores are impacted by seasonal differences. Twelve AMD and three reference streams were sampled for periphyton in June, August, and October. Water chemistry was collected at least once during the sampling period. Preliminary results showed that PIBI scores were significantly different (p<0.05) among the seasons. In addition, the seasonal trends in PIBI scores among streams were not consistent. The PIBI scores were correlated with six water chemistry variables in August and with at least one variable indicative of AMD in each season sampled. PCA and UPGMA analyses of water chemistry data grouped the streams into five categories: (1) moderately impacted AMD streams with lower total dissolved solids, sulfate, total aluminum, and alkalinity, and higher sulfate; (2) AMD streams with higher alkalinity and lower total aluminum; (3) AMD streams with lower alkalinity and higher total aluminum; (4) reference streams and (5) an outlier reference stream affected by nutrients. Relationships between the groups based on water chemistry and the groups derived from the PIBI will be discussed. [source] Analysis of the morphological attributes of a sweetpotato collectionANNALS OF APPLIED BIOLOGY, Issue 2 2010M.M. Manifesto The knowledge about the distribution of descriptors of a collection constitutes a useful tool for the management of genetic resources. The object of this work was to evaluate the composition and morphological characterisation of the ,in vitro' collection kept at the Gene Bank of the Biological Resources Institute (IRB), INTA Castelar, Argentina, to establish conservation criteria and make available useful data for breeding programmes. This collection, comprising 310 sweetpotato clones, includes landraces, worldwide clones, commercial varieties and breeding material. The descriptors, which presented the highest correlation values, were leaf lobe types, the shape of central leaf lobes and general leaf outline. Cluster analyses showed eight major groups with an average similarity of 0.42 (SE ± 0.005). About 76% of the clones presented unique morphology, whereas 34% of them were distributed in 22 groups that could not be distinguished with this technique. Worldwide germplasm formed a separate group with values of diversity higher than those of the Argentinean clones and no duplicates. A projection of the phenotypic variation among cultivars was obtained through Principal Coordinate Analysis (PCoorA), which confirmed the results obtained by UPGMA analysis, predominant skin colour, secondary skin colour, number of leaf lobes, general leaf outline, petiole pigmentation and predominant colour of vine were the variables that made the highest contribution. Collection composition in reference to flesh and skin colour was also analysed. [source] Analyses of RAPD data for detection of host specialization in Sclerotinia homoeocarpaPLANT PATHOLOGY, Issue 2 2000T. Hsiang Upgma analysis, principal component analysis, genetic diversity analysis and genetic distance analysis of RAPD data were used to assess the extent of host specialization in 50 isolates of S. homoeocarpa from five turfgrass hosts. In upgma analysis and principal component analysis, the occurrence of host specialization was not readily apparent based on visual inspection. Genetic diversity analysis showed significant differentiation among isolates from different host species (GST = 0.34, P < 0.001). The strongest evidence for some degree of host specialization came from the statistical analysis of genetic distances among isolates. By grouping pairwise genetic distances between isolates based on their host species, and analysing for average distance within the same host species and among different host species, it was found that the average distance within species was less than among species (P < 0.0001). An analysis of molecular variance of the genetic distances among isolates found that 32.3% of the total variation was attributable to host species. It is concluded that these isolates of S. homoeocarpa showed a weak level of host specialization, which was not readily apparent by upgma or principal component analyses, but was revealed by genetic diversity analysis and statistical analysis of genetic distances among isolates. Inoculation tests on different host species and tests using a greater number of isolates are required to confirm the extent of specialization. [source] | ||||||||||