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Unique Genotypes (unique + genotype)
Selected AbstractsThe evolution of black plumage from blue in Australian fairy-wrens (Maluridae): genetic and structural evidenceJOURNAL OF AVIAN BIOLOGY, Issue 5 2010Amy C. Driskell Genetic variation in the melanocortin-1 receptor (MC1R) locus is responsible for color variation, particularly melanism, in many groups of vertebrates. Fairy-wrens, Maluridae, are a family of Australian and New Guinean passerines with several instances of dramatic shifts in plumage coloration, both intra- and inter-specifically. A number of these color changes are from bright blue to black plumage. In this study, we examined sequence variation at the MC1R locus in most genera and species of fairy-wrens. Our primary focus was subspecies of the white-winged fairy-wren Malurus leucopterus in which two subspecies, each endemic to islands off the western Australian coast, are black while the mainland subspecies is blue. We found fourteen variable amino acid residues within M. leucopterus, but at only one position were alleles perfectly correlated with plumage color. Comparison with other fairy-wren species showed that the blue mainland subspecies, not the black island subspecies, had a unique genotype. Examination of MC1R protein sequence variation across our sample of fairy-wrens revealed no correlation between plumage color and sequence in this group. We thus conclude that amino acid changes in the MC1R locus are not directly responsible for the black plumage of the island subspecies of M. leucopterus. Our examination of the nanostructure of feathers from both black and blue subspecies of M. leucopterus and other black and blue fairy-wren species clarifies the evolution of black plumage in this family. Our data indicate that the black white-winged fairy-wrens evolved from blue ancestors because vestiges of the nanostructure required for the production of blue coloration exist within their black feathers. Based on our phylogeographic analysis of M. leucopterus, in which the two black subspecies do not appear to be each other's closest relatives, we infer that there have been two independent evolutionary transitions from blue to black plumage. A third potential transition from blue to black appears to have occurred in a sister clade. [source] Molecular Variability of Mycosphaerella graminicola as Detected by RAPD MarkersJOURNAL OF PHYTOPATHOLOGY, Issue 10 2004M. Razavi Abstract A total of 90 isolates of Mycosphaerella graminicola, the cause of septoria tritici leaf blotch of wheat, were tested for DNA polymorphism using 15 decamer random primers. There was a high level of genetic variability among isolates. In 131 random amplified polymorphic DNA (RAPD) fragments, which were produced, 96% were polymorphic. Based on multilocus analysis, 40 different molecular phenotypes were detected. These molecular phenotypes were randomly distributed among sampling sites, suggesting that no clonal structure existed in the population. Cluster analysis showed that the maximum similarity value among isolates was approximately 81% and no identical isolates were detected, indicating that every isolate was a unique genotype. The high degree of DNA polymorphism, the large number of different molecular phenotypes, their random distribution and the results of the cluster analysis all suggested that sexual reproduction has a major role in the genetic structure of M. graminicola in western Canada. The presence of sexual reproduction provides the opportunity for development of new virulent genotypes in the population and suggests that the pathogen may adapt rapidly to any race-specific sources of resistance. Therefore, when breeding for resistance to M. graminicola, emphasis should be placed on use of non-race-specific resistance. [source] Implications of phenotypic variation of Myzus persicae (Hemiptera: Aphididae) for biological control on greenhouse pepper plantsJOURNAL OF APPLIED ENTOMOLOGY, Issue 7 2009D. R. Gillespie Abstract Variation in vulnerability to natural enemies, reproductive rate and insecticide resistance among phenotypes of Myzus persicae (Sulzer) has been shown to have the potential to disrupt biological control and IPM of this species, and movement of particularly troublesome phenotypes in international horticultural trade could be cause for concern. Three important components of fitness, vulnerability to parasitoids, reproduction and insecticide resistance were determined in three clones of M. persicae originating from prevalent phenotype populations on pepper crops in greenhouses in British Columbia, Canada. One of these phenotypes appeared to be consistently involved in outbreaks in commercial operations. These clones were also characterized for their DNA microsatellite genotype and compared with genotypes of M. persicae from Europe. The clone involved in outbreaks in commercial greenhouses showed reduced vulnerability to parasitoids, and a higher reproductive rate compared to the other two clones suggesting that these traits may have been involved in outbreaks. As in M. persicae European clones, a higher reproductive rate was correlated with a lack of esterase-based resistance (primarily to organophosphates and, to some extent, to carbamates and pyrethroids). However, microsatellite analysis demonstrated that the three clones investigated in British Columbia had unique genotypes, and therefore there was no evidence for their movement in international trade. [source] The role of genotypic diversity in determining grassland community structure under constant environmental conditionsJOURNAL OF ECOLOGY, Issue 5 2007RAJ WHITLOCK Summary 1A recent experiment varied the genetic diversity of model grassland communities under standardized soil and management conditions and at constant initial species diversity. After 5 years' growth, genetically diverse communities retained more species diversity and became more similar in species composition than genetically impoverished communities. 2Here we present the results of further investigation within this experimental system. We proposed that two mechanisms , the first invoking genetically determined and constant differences in plant phenotypes and the second invoking genotype,environment interactions , could each underpin these results. This mechanistic framework was used as a tool to interpret our findings. 3We used inter-simple sequence repeat (ISSR) DNA markers to confirm which of the individuals of six study species initially included in the model communities were unique genotypes. We then used the molecular markers to assess the survival and abundance of each genotype at the end of the 5-year experimental period. 4The DNA marker data were used to create, for the first time, a genotype abundance hierarchy describing the structure of a community at the level of genotypes. This abundance hierarchy revealed wide variation in the abundance of genotypes within species, and large overlaps in the performance of the genotypes of different species. 5Each genotype achieved a consistent level of abundance within genetically diverse communities, which differed from that attained by other genotypes of the same species. The abundance hierarchy of genotypes within species also showed consistency across communities differing in their initial level of genetic diversity, such that species abundance in genetically impoverished communities could be predicted, in part, by genotypic identity. 6Three species (including two canopy-dominants) experienced shifts in their community-level genotype abundance hierarchies that were consistent with an increased influence of genotype,environment interactions in genetically impoverished communities. 7Our results indicate that under relatively constant environmental conditions the species abundance structure of plant communities can in part be predicted from the genotypic composition of their component populations. Genotype,environment interactions also appear to shape the structure of communities under such conditions, although further experiments are needed to clarify the magnitude and mechanism of these effects. [source] Grain aphid population structure: no effect of fungal infections in a 2-year field study in DenmarkAGRICULTURAL AND FOREST ENTOMOLOGY, Issue 3 2008A. B. Jensen Abstract 1,Sitobion avenae (F.) is a serious pest in Danish cereal crops. To understand the population genetic structure, aphids were sampled in seven different winter wheat (Triticum sativum Lamarck) fields throughout Denmark. The aphids were genotyped with seven microsatellite markers. In total, 2075 aphids were collected and 1203 of these were genotyped. 2,The Danish S. avenae populations displayed very high genotypic diversity, high percentages of unique genotypes and low linkage disequilibria; this is likely to be a result of genetic recombination encompassed by their holocyclic lifestyle. The populations showed very limited differentiation and no sign of isolation by distance. Almost all the genetic variation was ascribed within the populations rather than between populations, probably due to a high migration rate at approximate 10% per generation. 3,Seasonal changes in clonal diversity and distribution of asexual summer generations of S. avenae within the infestation period in a single winter wheat field were followed over two consecutive years by weekly sampling from 60 plots each of 20 × 20 m. Clonal diversity was high in all samples with no dominant clonal lineages and no significant difference in the genotypic diversity between weeks or between years. However, a temporal genetic differentiation effect, throughout the infestation, suggests that selective factors or high temporal migration play an important role in shaping the genetic structure S. avenae. 4,Analyses of fungal infected and uninfected aphids were performed to test whether some clonal linage were more often infected by fungi from the Entomophthorales under field conditions. In total, 54 progeny from aphids with Entomophthorales were genotyped and compared with 422 uninfected aphid genotypes. The Entomophthorales-infected aphid genotypes did not cluster out together, suggesting that these fungal pathogens did not affect the population differentiation or clonal distribution of S. avenae in a Danish agroecosystem. 5,Our findings indicate that S. avenae populations can be controlled using conservation biological control [source] Genetic variation in eastern North American and putatively introduced populations of Ceratocystis fimbriata f. plataniMOLECULAR ECOLOGY, Issue 10 2004C. J. B. ENGELBRECHT Abstract The plant pathogenic fungus Ceratocystis fimbriata f. platani attacks Platanus species (London plane, oriental plane and American sycamore) and has killed tens of thousands of plantation trees and street trees in the eastern United States, southern Europe and Modesto, California. Nuclear and mitochondrial DNA fingerprints and alleles of eight polymorphic microsatellite markers of isolates of C. fimbriata from these regions delineated major differences in gene diversities. The 33 isolates from the eastern United States had a moderate degree of gene diversity, and unique genotypes were found at each of seven collection sites. Fingerprints of 27 isolates from 21 collection sites in southern Europe were identical with each other; microsatellite markers were monomorphic within the European population, except that three isolates differed at one locus each, due perhaps to recent mutations. The genetic variability of C. fimbriata f. platani in the eastern United States suggests that the fungus is indigenous to this region. The genetic homogeneity of the fungus in Europe suggests that this population has gone through a recent genetic bottleneck, perhaps from the introduction of a single genotype. This supports the hypothesis that the pathogen was introduced to Europe through Naples, Italy during World War II on infected crating material from the eastern United States. The Californian population may also have resulted from introduction of one or a few related genotypes because it, too, had a single nuclear and mitochondrial genotype and limited variation in microsatellite alleles. [source] | ||||||||||