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Unknown Species (unknown + species)
Selected AbstractsRhodotorula cycloclastica sp. nov., Rhodotorula retinophila sp. nov., and Rhodotorula terpenoidalis sp. nov., three limonene-utilizing yeasts isolated from soilFEMS YEAST RESEARCH, Issue 8 2004Vu Nguyen Thanh Abstract During a search for yeasts that hydroxylate monoterpenes, four yeast strains were isolated from soil and plant residue in monoterpene-rich environments using enrichment techniques with cyclohexanedioic acid or cyclohexanedimethanol as sole carbon source. These strains were able to utilize (+)-limonene supplied as a vapor as only carbon source. The yeasts have a CoQ-10 system. Morphology and physiological properties of the strains did not fit any known yeast species. Recent analysis of the 26S D1/D2 and ITS-5.8S rDNA sequences of basidiomycetous yeasts showed that these strains represented three hitherto unknown species of Rhodotorula and fell in a cluster consisting of Rhodotorula philyla and the mycoparasitic fungus Colacogloea peniophorae. Descriptions of three new species Rhodotorula cycloclastica (type strain TVN 309=UOFS Y 2046=CBS 8448), Rhodotorula retinophila (type strain TVN 295=UOFS Y 2043=CBS 8446), Rhodotorula terpenoidalis (type strain TVN 310=UOFS Y 2042=CBS 8445) are proposed to accommodate these isolates. [source] The bacterial flora of vacuum-packed cold-smoked salmon stored at 7°C, identified by direct 16S rRNA gene analysis and pure culture techniqueJOURNAL OF APPLIED MICROBIOLOGY, Issue 1 2007T.C. Olofsson Abstract Aims:, The indigenous flora of freshly chilled cold-smoked salmon just after the vacuum packaging, and the spoilage flora after storage, in vacuum package at 7°C for 19 days, were to be investigated with two different sampling strategies. Methods and Results:, Identification was performed using 16S rRNA sequencing of both isolated bacteria and bacterial DNA from tissue extract. The indigenous flora of fresh cold-smoked vacuum-packed salmon was dominated by, in order, Brochothrix thermosphacta, Yersinia ruckeri, Photobacterium and Carnobacterium, whereas the spoilage flora of the same product stored at 7°C for 19 days was dominated by Lactobacillus and Photobacterium. The two sampling strategies showed similar results on the fish flora. Several new types of Photobacterium sequences, closely related to Photobacterium iliopiscarium and Photobacterium phosphoreum, were found from both the freshly processed and the stored salmon, indicating that smoked salmon harbours at least three different, as yet unknown, Photobacterium species. Conclusions:, Ten per cent of the bacterial flora multiplying on chilled, vacuum-packed, cold-smoked salmon comprised unknown species. The two sampling strategies complement each other. Significance and Impact of the Study:, As cold-smoked salmon is consumed without heat-treatment, the presence of undefined bacteria in high numbers should be considered in public health assessments. [source] Snailfishes of the central California coast: video, photographic and morphological observationsJOURNAL OF FISH BIOLOGY, Issue 4 2006D. L. Stein Video and photographic images of snailfishes (Liparidae) collected by the Monterey Bay Aquarium Research Institute, augmented by specimens collected simultaneously, were analysed. Nine species in five genera were identified, including Careproctus melanurus, Careproctus ovigerus, Careproctus longifilis, Careproctus gilberti, Careproctus filamentosus, Osteodiscus cascadiae, Nectoliparis pelagicus, Paraliparis dactylosus and Rhinoliparis barbulifer. Voucher specimens were collected of all except C. melanurus, C. gilberti and C. filamentosus. In addition, individuals of the Paraliparis,rosaceus' species group were abundant but could not be identified to species. Many liparids were identified only to family, but an individual of a very distinctive unknown species, presumably undescribed, was videotaped. Relative abundance of C. melanurus was estimated, and several in situ snailfish behaviours are described for the first time. [source] Characterizing diversity in composition and pasting properties of tuber flour in yam germplasm (Dioscorea spp.) from Southern EthiopiaJOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 10 2008Muluneh Tamiru Abstract BACKGROUND: Studies on composition and functional properties in germplasm collections are important in determining their diversity and suitability for food and non-food applications. The diversity in 65 yam accessions collected from Southern Ethiopia and belonging largely to a yet unknown species and to Dioscorea bulbifera L. (aerial yam) was analyzed based on protein, starch and amylose contents, and pasting properties of tuber flour, applying descriptive and multivariate statistics. RESULT: Starch content varied from 65.2% to 76.6% dry matter, while the protein content range was 6.4,13.4% dry matter. Amylose represented between 7.1% and 30.6% of the starch fraction, and was negatively correlated (P < 0.01) with starch content. UPGMA clustering and principal component analysis clearly distinguished aerial yam from those accessions with underground tubers. The first four principal components accounted for 78% of the total variability, and were highly correlated with pasting parameters. CONCLUSION: The extent of diversity detected among accessions studied showed scope for improving the crop through selection of landraces with desirable characteristics. Similar investigations on tubers grown under different environmental conditions and additional data on physicochemical properties of isolated starch will be useful in evaluating the potential of yam for food and non-food applications. Copyright © 2008 Society of Chemical Industry [source] The role of the gut flora in health and disease, and its modification as therapyALIMENTARY PHARMACOLOGY & THERAPEUTICS, Issue 8 2002A. L. Hart Summary The gut flora is a vast interior ecosystem whose nature is only beginning to be unravelled, due to the emergence of sophisticated molecular tools. Techniques such as 16S ribosomal RNA analysis, polymerase chain reaction amplification and the use of DNA microarrays now facilitate rapid identification and characterization of species resistant to conventional culture and possibly unknown species. Life-long cross-talk between the host and the gut flora determines whether health is maintained or disease intervenes. An understanding of these bacteria,bacteria and bacteria,host immune and epithelial cell interactions is likely to lead to a greater insight into disease pathogenesis. Studies of single organism,epithelial interactions have revealed the large range of metabolic processes that gut bacteria may influence. In inflammatory bowel diseases, bacteria drive the inflammatory process, and genetic predisposition to disease identified to date, such as the recently described NOD2/CARD15 gene variants, may relate to altered bacterial recognition. Extra-intestinal disorders, such as atopy and arthritis, may also have an altered gut milieu as their basis. Clinical evidence is emerging that the modification of this internal environment, using either antibiotics or probiotic bacteria, is beneficial in preventing and treating disease. This natural and apparently safe approach holds great appeal. [source] Multi-frequency EPR and Mössbauer spectroscopic studies on freeze-quenched reaction intermediates of nitric oxide synthase ,MAGNETIC RESONANCE IN CHEMISTRY, Issue S1 2005C. Jung Abstract It is believed by analogy to chloroperoxidase (CPO) from Caldariomyces fumago that the electronic structure of the intermediate iron-oxo species in the catalytic cycle of nitric oxide synthase (NOS) corresponds to an iron(IV) porphyrin- , -cation radical. Such species can also be produced by the reaction of ferric NOS with external oxidants within the shunt pathway. We present multi-frequency EPR (9.6, 94, 285 GHz) and Mössbauer spectroscopic studies on freeze-quenched intermediates of the oxygenase domain of nitric oxide synthase which has reacted with peroxy acetic acid within 8,200 ms. The intermediates of the oxygenase domain of both the cytokine inducible NOS (iNOSox) and the neuronal NOS (nNOSox) show an organic radical signal in the 9.6-GHz spectrum overlapping with the spectrum of an unknown species with g -values of 2.24, 2.23 and 1.96. Using 94- and 285-GHz EPR the organic radical signal is assigned to a tyrosine radical on the basis of g -values (i.e. Tyr*562 in nNOSox and Tyr*341 in iNOSox). Mössbauer spectroscopy of 57Fe-labeled unreacted nNOSox shows a ferric low-spin heme-iron (, = 0.38 mms,1, ,EQ = 2.58 mms,1). The reaction of nNOSox with peroxy acetic acid for 8 ms leads to the disappearance of the magnetic background characteristic for native nNOSox and a new species with , = 0.27 mms,1 and ,EQ = 2.41 mms,1 is detected at 4.2 K which does not resemble the parameters typical for a Fe(IV) center. It is proposed that this intermediate species corresponds to a ferric low-spin species which magnetically couples to an amino acid radical (presumably Trp*409). Copyright © 2005 John Wiley & Sons, Ltd. [source] A new approach to aid the characterisation and identification of metabolites of a model drug; partial isotope enrichment combined with novel formula elucidation softwareRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 2 2009Kirsten Hobby This work describes the identification of ,isotopically enriched' metabolites of 4-cyanoaniline using the unique features of the software package ,Spectral Simplicity'. The software is capable of creating the theoretical mass spectra for partially isotope-enriched compounds, and subsequently performing an elemental composition analysis to give the elemental formula for the ,isotopically enriched' metabolite. A novel mass spectral correlation method, called ,FuzzyFit', was employed. ,FuzzyFit' utilises the expected experimental distribution of errors in both mass accuracy and isotope pattern and enables discrimination between statistically probable and improbable candidate formulae. The software correctly determined the molecular formulae of ten previously described metabolites of 4-cyanoaniline confirming the technique of partial isotope enrichment can produce results analogous to standard methodologies. Six previously unknown species were also identified, based on the presence of the unique ,designer' isotope ratio. Three of the unknowns were tentatively identified as N-acetylglutamine, O-methyl-N acetylglucuronide and a putative fatty acid conjugate. The discovery of a significant number of unknown species of a model drug with a comprehensive history of investigation highlights the potential for enhancement to the analytical process by the use of ,designer' isotope ratio compounds. The ,FuzzyFit' methodology significantly aided the elucidation of candidate formulae, by provision of a vastly simplified candidate formula data set. Copyright © 2008 John Wiley & Sons, Ltd. [source] | |||||||||||||