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Life Sciences	50%

Selected Abstracts

Incomplete movement of Cryphonectria hypovirus 1 within a vegetative compatibility type of Cryphonectria parasitica in natural cankers on grafted American chestnut trees

FOREST PATHOLOGY, Issue 6 2002
E. P. Hogan
Summary American chestnut trees, grafted in 1980 from large survivors, were inoculated in 1982 and 1983 with four white (European) hypovirulent strains of Cryphonectria parasitica, infected with C. hypovirus 1 (CHV1); this hypovirus has been shown to be capable of moving rapidly within the mycelium of a vegetative compatibility (vc) type of C. parasitica in blight cankers. Using a 49-cell lattice plot, 17.8×17.8 cm, the spatial patterns and frequencies of white and pigmented isolates and white and pigmented vc types were investigated within superficial cankers on the grafts located outside the hypovirulent-strain-inoculated zone. Four of six cankers assayed contained white isolates, and three of the four had random spatial patterns of white isolates, based on join-count statistics. Vc tests, using pigmented isolates and pigmented single-spore colonies of white isolates, indicated that the majority of white and pigmented isolates recovered from each of two cankers assayed were in one vc type. White and pigmented lattice-plot cells of the same vc type were frequently in contact with each other, indicating incomplete movement of CHV1 within a vc type. Nine and 10 vc types were found in the two cankers; it is hypothesized that small, white vc type areas in each canker may be a source of CHV1 transmission to the major vc types. Based on join-count statistics, the spatial pattern of the single, major vc type in one canker was non-random (aggregated), whereas the other canker had a random major vc type pattern. White and pigmented in vitro variants (sectors) of C. parasitica, that resemble white and pigmented in vivo variants in spatial contact and vc compatibility, were intermediate hypovirulent and virulent on forest American chestnuts, and dsRNA positive and negative, respectively. Incomplete movement of CHV1 within a vc type could be a major cause of the prevalence of pigmented isolates in superficial cankers on chestnut trees. Résumé Des châtaigniers américains greffés en 1980 à partir de grands arbres survivants, ont été inoculés en 1982 et 1983 avec quatre souches blanches (européennes) hypovirulentes de Cryphonectria parasitica, infectées par l'hypovirus 1 (CHV 1). Cet hypovirus avait été montré capable de migrer rapidement dans le mycélium végétativement compatible (vc) de C. parasitica dans des chancres. Grâce un dispositif à 49 cellules (17,8×17,8 cm), la répartition spatiale et la fréquence des isolats blancs et pigmentés, et des GCV, ont étéétudiées dans des chancres superficiels chez les greffons, en dehors de la zone inoculée par les souches hypovirulentes. Quatre des six chancres étudiés contenaient des isolats blancs, dont la répartition spatiale était erratique chez trois d'entre eux. Les tests de compatibilité végétative, utilisant des isolats pigmentés et des colonies pigmentées mono-sporées d'isolats blancs, ont montré que la majorité des isolats blancs et des isolats colorés trouvés dans chacun des deux chancres analysés, était d'un seul type végétatif. Les cellules du dispositif, blanches ou pigmentées du même GCV, étaient fréquemment en contact, ce qui indique un mouvement incomplet de CHV1 dans un GCV. Neuf et dix GCV ont été trouvés dans les deux chancres et on avance l'hypothèse que de petites zones à GCV blancs dans chaque chancre peuvent être une source de transmission de CHV1 aux types végétatifs majoritaires. L'unique GCV majoritaire dans un des chancres n'était pas réparti au hasard (agrégé), mais il l'était dans l'autre chancre. Les variants blancs et pigmentés in vitro (secteurs) de C. parasitica, qui ressemblent aux variants blancs et pigmentés in vivo en contact spatial, étaient intermédiaires en hypovirulence et en virulence sur les châtaigniers américains, et respectivement positifs et négatifs pour le dsRNA. Un mouvement incomplet de CHV1 dans un GCV pourrait être la principale cause de la prévalence d'isolats pigmentés dans des chancres superficiels. Zusammenfassung Amerikanische Kastanien (Castanea dentata), die im Jahr 1980 von adulten überlebenden Exemplaren veredelt worden waren, wurden 1982 und 1983 mit vier unpigmentierten, hypovirulenten Stämmen von Cryphonectria parasitica aus Europa inokuliert, die mit dem Cryphonectria parasitica - hypovirus 1 (CHV 1) infiziert waren. Es war nachgewiesen, dass sich dieses Hypovirus rasch innerhalb des Myzels eines vc-Typs von C. parasitica in Krebsen ausbreiten konnte. Bei oberflächlichen Krebsen an veredelten Bäumen ausserhalb der mit dem hypovirulenten Stamm inokulierten Zone wurde auf einer 17,8×17,8 cm grossen Fläche (die in 49 Quadrate unterteilt wurde) die räumliche Verteilung und die Häufigkeit von unpigmentierten und pigmentierten Isolaten sowie der vc-Typen untersucht. Vier von sechs analysierten Krebsen enthielten weisse Isolate und drei davon zeigten zufällige Verteilungsmuster der Isolate (gemäss Joint-Count-Statistik). Vc-Tests mit pigmentierten Isolaten und pigmentierten Einzelsporkulturen von weissen Isolaten zeigten, dass die Mehrheit der weissen und der pigmentierten Isolate von zwei Krebsen zur gleichen vc-Gruppe gehörten. Weisse und pigmentierte Probepunkte mit dem gleichen vc-Typ waren häufig benachbart, was eine unvollständige Ausbreitung des CHV 1 innerhalb eines vc-Typs anzeigt. In den 2 Krebsen wurden 9 bzw. 10 vc-Typen nachgewiesen und es wird vermutet, dass kleine Bereiche mit weissem vc-Typ innerhalb eines Krebses als Reservoir für die Übertragung des Virus zu den dominanten vc-Typen fungieren können. Mit Hilfe der Joint-Count-Statistik wurde nachgewiesen, dass das räumliche Muster des einen, dominanten vc-Typs in einem Krebs nicht zufällig, sondern aggregiert war, während der andere Krebs ein zufälliges Verteilungsmuster der vc-Typen aufwies. Weisse und pigmentierte Varianten von C. parasitica, die in vitro auftraten (Sektoren), und die den weissen und pigmentierten Varianten sehr ähnlich sind, die in der Natur in räumlichem Kontakt zueinander auftreten, und die vegetativ kompatibel sind, zeigten in Feldversuchen auf C. sativa eine mittlere Hypovirulenz bzw. Virulenz. Ausserdem waren sie dsRNA positiv bzw. negativ. Die unvollständige Ausbreitung des CHV 1 innerhalb einer vc-Typs könnte das überwiegen pigmentierter Isolate in oberflächlichen Krebsen erklären. [source]

A phylogeographical study of the Turnip mosaic virus population in East Asia reveals an ,emergent' lineage in Japan

MOLECULAR ECOLOGY, Issue 14 2006
YASUHIRO TOMITAKA
Abstract The genetic structure of populations of Turnip mosaic virus (TuMV) in East Asia was assessed by making host range and gene sequence comparisons of 118 isolates utilizing a population genetic approach. Most, but not all, isolates collected from Brassica plants in China infected only Brassica plants, whereas those from Japan infected both Brassica and Raphanus (BR) plants. Analyses of the positions of recombination sites in five regions of the genomes (one third of the full sequence) of the many recombinant isolates were fully congruent with the results of phylogenetic analysis, and at least one recombination type pattern was shared between Chinese and Japanese populations. One lineage of nonrecombinant isolates from the basal-BR lineage was found in 2000 in Kyushu, Japan but none in China, and have since been found over the whole island. The sudden expansion of this basal-BR population was strongly supported by calculations showing the deviations from the neutral equilibrium model for the individual geographical lineages with overall lack of nucleotide diversity, and by analysis of mismatch distribution. Our study shows that the recent Chinese and Japanese TuMV isolates are part of the same population but are discrete lineages. [source]

Effects of selective logging on tree diversity, composition and plant functional type patterns in a Bornean rain forest

JOURNAL OF VEGETATION SCIENCE, Issue 1 2003
René Verburg
Sidiyasa et al. (1999); Anon. (1955,1994) Abstract. The effects of selective logging on tree diversity, changes in tree species composition and plant functional types were studied with the use of seven permanent plots in virgin and in logged forest. All plots were located in a lowland dipterocarp rain forest in East Kalimantan on the island of Borneo. Just after logging and during the following 20 yr tree diversity measured as Fishers', was not significantly affected in logged forest plots. Temporal shifts in tree species composition were analysed with Principal Component Analysis (PCA). Logged forest plots had much larger changes over time than virgin forest plots. In the smallest diameter class, some logged forest plots showed a distinct trajectory in PCA space compared to virgin forest plots, while in larger diameter classes movement of logged plots in PCA space was random. This suggests that there is no predetermined community to which logged forest plots tend to shift when recovering from logging. We found a significant negative correlation between diameter increments and the species-specific wood densities of tree species. Species-specific wood density and potential tree height were used to assign species to five PFTs. As expected, logging increased the fraction of softwood stems in small diameter classes. In the largest diameter classes (, 50 cm DBH) a strong decrease of softwood emergent stems was found in logged forest plots. After more than 20 yr no recruitment was found of softwood emergent stems in selectively logged forest. [source]

Optical coherence tomography of chorioretinal and choroidal folds

ACTA OPHTHALMOLOGICA, Issue 3 2007
Giuseppe Giuffrè
Abstract. Purpose:, To report the optical coherence tomography (OCT) findings in cases of chorioretinal and choroidal folds. Methods:, Eight subjects with folds of the fundus of the eye were examined with fundus photography, fluorescein angiography, B-scan ultrasonography and Stratus OCT. Results:, Two types patterns were found on OCT. Five cases showed undulating retinal as well as retinal pigment epithelial lines of normal thickness; these were defined as chorioretinal folds. The posterior vitreous surface often adhered to the crests of the folds only. Three cases exhibited a wavy appearance of the retinal pigment epithelium and a flat retinal surface; these were classified as choroidal folds. Conclusions:, Scanning by OCT can differentiate chorioretinal folds from choroidal folds and reveal the relationships between the folds and the posterior vitreous surface. [source]