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Total Variation (total + variation)
Selected AbstractsGenetic structure in Atlantic brown trout (Salmo trutta L.) populations in the Iberian peninsula: evidence from mitochondrial and nuclear DNA analysisJOURNAL OF ANIMAL BREEDING AND GENETICS, Issue 3 2000S. Dunner Summary Brown trout (Salmo trutta L.) was sampled in rivers belonging to three different Spanish basins in order to analyse the distribution of genetic variability. The genetic analysis was performed by using two systems and techniques: nuclear DNA was screened through random amplified polymorphic DNAs (screening 2 × 105 bp of the whole genome), and mitochondrial DNA (mtDNA) through sequencing of the hypervariable control region. Genetic distances between the populations were similar using either analysis although some differences arise. For example, some populations of the Tajo basin were very close through nuclear analysis but more distant using mtDNA. Differences between the two DNA sources could be the result of a different evolutionary rate, and the fact that mtDNA is maternally transmitted and differences in sex migration rates will influence the patterns of genetic variation between the transmitted DNAs. Total variation was partitioned using amova showing a clear subdivision among basins although intrapopulation variation remained as high as 62%. A correspondence analysis defined the differences in a three-dimensional way, clustering the populations according to their common basin. When mtDNA was sequenced, higher variability was noted in the segment between 400 and 600bp of the whole D-loop sequence, suggesting that these 200bp improved the analysis of the variability more than sequencing the t-RNA ends of the control region. A comparison was made between the t-RNAPro ends of the 10 populations screened here and the rest of the published sequences found in the literature, leading to a concentration of these populations in group IV which includes all trouts which originate in the Atlantic. The analyses performed suggest that a high genetic variability is present in all populations and that although there has been a probable interference from stocked strains introduced to increase population density, this was only detectable through the variance between rivers which reflect different policies according to the region where the basin is located. However, the genetic analysis using the two approaches allows the control of the natural populations avoiding a loss of their genetic potential. Zusammenfassung In drei verschiedenen spanischen Wassersystemen wurden Bachforellen (Salmo trutta L.) gesammelt, um die genetische Variabilität zu analysieren. Zur Analyse wurden zwei Systeme und zwei Techniken genutzt: Kern-DNA wurde mittels RAPD analysiert (2.105bp des Gesamtgenoms), mitochondriale DNA durch das Sequenzieren der hypervariablen Kontrollregion. Beide Techniken ergaben ähnliche genetische Distanzen zwischen den Populationen, obwohl Unterschiede bei Populationen aus dem Tajo-Gebiet auftraten, deren Kern-DNA eine sehr geringe Distanz aufwiesen, während die über Sequenzierung von mtDNA ermittelte Distanz auf größere Unterschiede hinwies. Diese Differenz könnte das Ergebnis unterschiedlicher Mutationsraten während der Evolution sein, oder auf dieTatsache zurückzuführen sein, daß mtDNA über die Mutterlinien weitergegeben wird, und Migrationsunterschiede zwischen den Geschlechtern die Muster der genetischen Variation der weitergegebenen DNA-Stücke beeinflußt. Die Gesamtvarianz wurde mit Hilfe von AMOVA analysiert, wobei zwischen den Wassersystemen eine eindeutige Unterteilung festgestellt werden konnte, obwohl die Varianz innerhalb der Population bei 62% liegt. Eine Korrespondenzanalyse erklärt die Distanzen dreidimensional, wodurch die Populationen gleicher Herkunft in Cluster zusammenfallen. Bei der Sequenzierung von mtDNA wurde eine größere Variabilität im Sequenzbereich zwischen 400 und 600 bp der gesamten D-Loop Sequenz festgestellt, was darauf schließen läßt, daß diese 200 bp für eine Analyse der Variabilität geeigneter sind als eine Sequenzierung der t-RNA Enden der Kontrollregion. Ein Vergleich der t-RNAPro Enden der zehn hier untersuchten Populationen und der bereits publizierten Sequenzen führen zu einer Konzentration dieser in der Gruppe IV, zu der alle Forellenpopulationen zählen, die aus dem Atlantik stammen. Die Untersuchung deutet auf eine hohe genetische Variabilität in allen Populationen hin und auf Interferenzen durch Aufstockungsmaßnahmen zur Erhöhung der Populationsdichten hin. Dies ist nur durch die Varianz zwischen den Flußsystemen aufzuklären, die von Region zu Region unterschiedliche Maßnahmen wiederspiegelt. Die genetische Analyse mittels dieser zwei Ansätze erlaubt eine Kontrolle der natürlichen Populationen zwecks Vermeidung eines Verlustes ihres genetischen Potentials. [source] Introduced plants of the invasive Solidago gigantea (Asteraceae) are larger and grow denser than conspecifics in the native rangeDIVERSITY AND DISTRIBUTIONS, Issue 1 2004Gabi Jakobs ABSTRACT Introduced plant species that became successful invaders appear often more vigorous and taller than their conspecifics in the native range. Reasons postulated to explain this better performance in the introduced range include more favourable environmental conditions and release from natural enemies and pathogens. According to the Evolution of Increased Competitive Ability hypothesis (EICA hypothesis) there is a trade-off between investment into defence against herbivores and pathogens, and investment into a stronger competitive ability. In this study, we conducted field surveys to investigate whether populations of the invasive perennial Solidago gigantea Ait (Asteraceae) differ with respect to growth and size in the native and introduced range, respectively. We assessed size and morphological variation of 46 populations in the native North American range and 45 populations in the introduced European range. Despite considerable variation between populations within continents, there were pronounced differences between continents. The average population size, density and total plant biomass were larger in European than in American populations. Climatic differences and latitude explained only a small proportion of the total variation between the two continents. The results show that introduced plants can be very distinct in their growth form and size from conspecifics in the native range. The apparently better performance of this invasive species in Europe may be the result of changed selection pressures, as implied by the EICA hypothesis. [source] Species richness patterns and metapopulation processes , evidence from epiphyte communities in boreo-nemoral forestsECOGRAPHY, Issue 2 2006Swantje Löbel For several epiphyte species, dispersal limitation and metapopulation dynamics have been suggested. We studied the relative importance of local environmental conditions and spatial aggregation of species richness of facultative and obligate epiphytic bryophytes and lichens within two old-growth forests in eastern Sweden. The effect of the local environment was analyzed using generalized linear models (GLM). We tested whether species richness was spatially structured by fitting variogram models to the residuals of the GLM. In addition, we analyzed the species-area relationship (area=tree diameter). Different environmental variables explained the richness of different species groups (bryophytes vs lichens, specialists vs generalists, sexual vs asexual dispersal). In most groups, the total variation explained by environmental variables was higher than the variation explained by the spatial model. Spatial aggregation was more pronounced in asexually than in sexually dispersed species. Bryophyte species richness was only poorly predicted by area, and lichen species richness was not explained by area at all. Spatial aggregation may indicate effects of dispersal limitation and metapopulation dynamics on community species richness. Our results suggest that species groups differ in habitat requirements and dispersal abilities; there were indications that presence of species with different dispersal strategies is linked to the age of the host tree. Separate analyses of the species richness of species groups that differ in the degree of habitat specialization and dispersal ability give insights into the processes determining community species richness. The poor species-area relationship, especially in lichens, may indicate species turnover rather than accumulation during the lifetime of the host tree. Epiphyte species extinctions may be mainly caused by deterministic processes, e.g. changes in habitat conditions as the host tree grows, ages and dies, rather than by stochastic population processes. [source] Relative influences of catchment- and reach-scale abiotic factors on freshwater fish communities in rivers of northeastern MesoamericaECOLOGY OF FRESHWATER FISH, Issue 3 2010P. C. Esselman Esselman PC, Allan JD. Relative influences of catchment- and reach-scale abiotic factors on freshwater fish communities in rivers of northeastern Mesoamerica. Ecology of Freshwater Fish 2010: 19: 439,454. © 2010 John Wiley & Sons A/S Abstract,,, While the abiotic factors important to freshwater fish assemblages at a reach scale are well understood, studies of larger scale constraints have yielded variable conclusions, spurring a need for further studies in new biogeographic contexts. This study investigated the importance of catchment- and reach-scale abiotic factors to variation in freshwater fish assemblages in rivers of northeastern Mesoamerica. Abiotic variables and fish data from 72 sampling sites on main stem rivers of Belize were used with partial constrained ordination to determine the proportion of spatially structured and unstructured variation in fish presence and absence, relative abundance, and community metrics explained by catchment- and reach-scale environmental factors. Results showed that, combined, catchment and reach variables explained a large portion of the total variation in the fish assemblage data (54,75%), and that catchment environment explained a greater portion of variation (42,63%) than reach environment (34,50%). Variables representing landscape position (local elevation, watershed area) and their reach-level correlates (channel width, depth variation, and substrate) correlated strongly to the fish assemblage data. Our results suggest that landscape-scale factors have a stronger relative influence on assemblages than environmental conditions at the reach scale within our study area. These results contrast with past findings that showed greater local scale influence in landscapes with low anthropogenic disturbance levels. Our findings suggest that biodiversity conservation efforts should consider assemblage variation across a longitudinal gradient, and that a multi-catchment region is a biologically relevant scale for fish conservation planning and coordination in northeastern Mesoamerica. [source] Zinc and copper plasma levels in Icelandic horses with Culicoides hypersensitivityEQUINE VETERINARY JOURNAL, Issue 5 2001G. STARK Summary Zinc concentration has been shown to have a potent immunomodulatory capacity, particularly influencing T helper cell organisation and cytokine secretion. Culicoides hypersensitivity (CHS) in horses resembles the early and late phase of type I hypersensitive reactions in man, characterised by a shift from T helper cell subtype 1 to T helper cell subtype 2 cytokine profile. In this pilot study, zinc and copper levels were measured in the plasma of 48 CHS-affected and 56 healthy Icelandic horses age 4,25 years (mean , 11 years) kept on 7 farms. Affected horses were divided into 3 groups according to the severity of disease. Time of blood collection and feeding management was constant. No differences in zinc or copper plasma levels and plasma copper/zinc ratio were determined among CHS horses and controls by univariate analysis of variance. Therefore, the most significant influences on zinc and copper plasma levels were affected by the location of housing. However, Spearman correlation showed a negative coefficient between the plasma zinc concentration and the severity of CHS (r =,0.31). Due to a probability value of P = 0.002 the null hypothesis r = 0 is rejected, although only 9% of the total variation of plasma zinc is presently explained by its relationship to CHS. In contrast, the Spearman correlation coefficient between plasma copper levels and severity of CHS was not significant (r =,0.14; P = 0.16). The minor deviations in plasma zinc concentrations in association with the severity of CHS may be real or due to neurohumoral or cytokine-mediated mechanisms, but appear too minimal to be relevant. [source] Beyond six scents: defining a seventh Thymus vulgaris chemotype new to southern France by ethanol extractionFLAVOUR AND FRAGRANCE JOURNAL, Issue 3 2009Ken Keefover-Ring Abstract The concept of plant chemotype has long been useful to describe secondary chemical phenotypes; however, the idea has practical limitations, especially when applied to ecological questions. This work reports the discovery of a new 1,8-cineole chemotype of Thymus vulgaris from a well-studied area in southern France. Multivariate statistical analysis of ethanol-extracted plant terpenes was used to describe this new chemotype and three others found at the site, and the results are used to discuss the chemotype concept. While the total amount of essential oils among these chemotypes showed no difference, the concentration of the main terpene differed significantly, with the 1,8-cineole and cis -sabinene hydrate chemotypes having the lowest amounts of their respective main components, and the linalool chemotype having the highest. The , -terpinyl acetate chemotype had intermediate levels of its main terpene. A factor analysis revealed four factors which explained almost 89% of the total variation in plant essential oils. Each factor represented a separate chemotype, including a cis -sabinene hydrate, linalool, ,- terpinyl acetate and the new 1,8-cineole chemotype. Although the concept of plant chemotype is still valid, better definitions are important when evaluating the influences of a plant's secondary chemistry on other community members. Copyright © 2009 John Wiley & Sons, Ltd. [source] Cold adaptation in geographical populations of Drosophila melanogaster: phenotypic plasticity is more important than genetic variabilityFUNCTIONAL ECOLOGY, Issue 5 2004A. AYRINHAC Summary 1According to their geographical distribution, most Drosophila species may be classified as either temperate or tropical, and this pattern is assumed to reflect differences in their thermal adaptation, especially in their cold tolerance. We investigated cold tolerance in a global collection of D. melanogaster by monitoring the time adults take to recover from chill coma after a treatment at 0 °C. 2Flies grown at an intermediate temperature (21 °C) showed a significant linear latitudinal cline: recovery was faster in populations living in colder climates. 3The role of growth temperature was analysed in a subset of tropical and temperate populations. In all cases, recovery time decreased when growth temperature was lowered, and linear reaction norms were observed. This adaptive phenotypic plasticity explained more than 80% of the total variation, while genetic latitudinal differences accounted for less than 4%. 4The beneficial effect observed in adults grown at a low temperature contrasts with other phenotypic effects which, like male sterility, appear as harmful and pathological. Our results point to the difficulty of finding a general interpretation to the diversity of plastic responses that are induced by growth temperature variations. [source] Storage, patterns and controls of soil organic carbon in the Tibetan grasslandsGLOBAL CHANGE BIOLOGY, Issue 7 2008YUANHE YANG Abstract The soils of the Qinghai-Tibetan Plateau store a large amount of organic carbon, but the magnitude, spatial patterns and environmental controls of the storage are little investigated. In this study, using data of soil organic carbon (SOC) in 405 profiles collected from 135 sites across the plateau and a satellite-based dataset of enhanced vegetation index (EVI) during 2001,2004, we estimated storage and spatial patterns of SOC in the alpine grasslands. We also explored the relationships between SOC density (soil carbon storage per area) and climatic variables and soil texture. Our results indicated that SOC storage in the top 1 m in the alpine grasslands was estimated at 7.4 Pg C (1 Pg=1015 g), with an average density of 6.5 kg m,2. The density of SOC decreased from the southeastern to the northwestern areas, corresponding to the precipitation gradient. The SOC density increased significantly with soil moisture, clay and silt content, but weakly with mean annual temperature. These variables could together explain about 72% of total variation in SOC density, of which 54% was attributed to soil moisture, suggesting a key role of soil moisture in shaping spatial patterns of SOC density in the alpine grasslands. [source] Variation in wood density determines spatial patterns inAmazonian forest biomassGLOBAL CHANGE BIOLOGY, Issue 5 2004Timothy R. Baker Abstract Uncertainty in biomass estimates is one of the greatest limitations to models of carbon flux in tropical forests. Previous comparisons of field-based estimates of the aboveground biomass (AGB) of trees greater than 10 cm diameter within Amazonia have been limited by the paucity of data for western Amazon forests, and the use of site-specific methods to estimate biomass from inventory data. In addition, the role of regional variation in stand-level wood specific gravity has not previously been considered. Using data from 56 mature forest plots across Amazonia, we consider the relative roles of species composition (wood specific gravity) and forest structure (basal area) in determining variation in AGB. Mean stand-level wood specific gravity, on a per stem basis, is 15.8% higher in forests in central and eastern, compared with northwestern Amazonia. This pattern is due to the higher diversity and abundance of taxa with high specific gravity values in central and eastern Amazonia, and the greater diversity and abundance of taxa with low specific gravity values in western Amazonia. For two estimates of AGB derived using different allometric equations, basal area explains 51.7% and 63.4%, and stand-level specific gravity 45.4% and 29.7%, of the total variation in AGB. The variation in specific gravity is important because it determines the regional scale, spatial pattern of AGB. When weighting by specific gravity is included, central and eastern Amazon forests have significantly higher AGB than stands in northwest or southwest Amazonia. The regional-scale pattern of species composition therefore defines a broad gradient of AGB across Amazonia. [source] Rainfall interception in a lower montane forest in Ecuador: effects of canopy propertiesHYDROLOGICAL PROCESSES, Issue 7 2005Katrin Fleischbein Abstract Rainfall interception in forests is influenced by properties of the canopy that tend to vary over small distances. Our objectives were: (i) to determine the variables needed to model the interception loss of the canopy of a lower montane forest in south Ecuador, i.e. the storage capacity of the leaves S and of the trunks and branches St, and the fractions of direct throughfall p and stemflow pt; (ii) to assess the influence of canopy density and epiphyte coverage of trees on the interception of rainfall and subsequent evaporation losses. The study site was located on the eastern slope of the eastern cordillera in the south Ecuadorian Andes at 1900,2000 m above sea level. We monitored incident rainfall, throughfall, and stemflow between April 1998 and April 2001. In 2001, the leaf area index (LAI), inferred from light transmission, and epiphyte coverage was determined. The mean annual incident rainfall at three gauging stations ranged between 2319 and 2561 mm. The mean annual interception loss at five study transects in the forest varied between 591 and 1321 mm, i.e. between 25 and 52% of the incident rainfall. Mean S was estimated at 1·91 mm for relatively dry weeks with a regression model and at 2·46 mm for all weeks with the analytical Gash model; the respective estimates of mean St were 0·04 mm and 0·09 mm, of mean p were 0·42 and 0·63, and of mean pt were 0·003 and 0·012. The LAI ranged from 5·19 to 9·32. Epiphytes, mostly bryophytes, covered up to 80% of the trunk and branch surfaces. The fraction of direct throughfall p and the LAI correlated significantly with interception loss (Pearson's correlation coefficient r = ,0·77 and 0·35 respectively, n = 40). Bryophyte and lichen coverage tended to decrease St and vascular epiphytes tended to increase it, although there was no significant correlation between epiphyte coverage and interception loss. Our results demonstrate that canopy density influences interception loss but only explains part of the total variation in interception loss. Copyright © 2004 John Wiley & Sons, Ltd. [source] Does Greater Firm-Specific Return Variation Mean More or Less Informed Stock Pricing?JOURNAL OF ACCOUNTING RESEARCH, Issue 5 2003Artyom Durnev ABSTRACT Roll [1988] observes low R2 statistics for common asset pricing models due to vigorous firm-specific return variation not associated with public information. He concludes that this implies "either private information or else occasional frenzy unrelated to concrete information"[p. 56]. We show that firms and industries with lower market model R2 statistics exhibit higher association between current returns and future earnings, indicating more information about future earnings in current stock returns. This supports Roll's first interpretation: higher firm-specific return variation as a fraction of total variation signals more information-laden stock prices and, therefore, more efficient stock markets. [source] Contribution of the LRP5 Gene to Normal Variation in Peak BMD in Women,JOURNAL OF BONE AND MINERAL RESEARCH, Issue 1 2005Daniel L Koller Abstract The role of the LRP5 gene in rare BMD-related traits has recently been shown. We tested whether variation in this gene might play a role in normal variation in peak BMD. Association between SNPs in LRP5 and hip and spine BMD was measured in 1301 premenopausal women. Only a small proportion of the BMD variation was attributable to LRP5 in our sample. Introduction: Mutations in the low-density lipoprotein receptor-related protein 5 (LRP5) gene have been implicated as the cause of multiple distinct BMD-related rare Mendelian phenotypes. We sought to examine whether the LRP5 gene contributes to the observed variation in peak BMD in the normal population. Materials and Methods: We genotyped 12 single nucleotide polymorphisms (SNPs) in LRP5 using allele-specific PCR and mass spectrometry methods. Linkage disequilibrium between the genotyped LRP5 SNPs was measured. We tested for association between these SNPs and both hip and spine BMD (adjusted for age and body weight) in 1301 healthy premenopausal women who took part in a sibling pair study aimed at identifying the genes underlying peak bone mass. Our study used both population-based (ANOVA) and family-based (quantitative transmission disequilibrium test) association methodology. Results and Conclusions: The linkage disequilibrium pattern and haplotype block structure within the LRP5 gene were consistent with that observed in other studies. Although significant evidence of association was found between LRP5 SNPs and both hip and spine BMD, only a small proportion of the total variation in these phenotypes was accounted for. The genotyped SNPs accounted for ,0.8% of the variation in femoral neck BMD and 1.1% of the variation in spine BMD. Results from our sample suggest that natural variation in and around LRP5 is not a major contributor to the observed variability in peak BMD at either the femoral neck or lumbar spine in white women. [source] Floristic inventory and diversity assessment of a lowland African Montane Rainforest at Korup, Cameroon and implications for conservationAFRICAN JOURNAL OF ECOLOGY, Issue 3 2010Innocent Ndoh Mbue Abstract Twenty modified-Whittaker plots were stratified at different sampling locations from February to May of 2008 in the central zone of Korup National Park, Cameroon. Our interest was to assess floristic diversity and investigate their relationship with environmental variables. Diversity profiles and rank abundance,curves were used for diversity analysis while canonical correspondence analysis and species,response curves were used to investigate the relationships between the response and explanatory variables. Of the 66 families identified, the Rubiaceae (999 species) were the most abundant. The Sterculiaceae (basal area = 10.482 m2 ha,1) were the dominant family, while the co-dominant families included the Ebenaceae (basal area = 9.092 m2 ha,1) and the Euphorbiaceae (basal area = 8.168 m2 ha,1). Soil variables explained 54.3% of total variation in family distribution. Canonical axes were related to different environmental gradients: axis1 was related to increasing canopy cover (r = 0.6951); axis 2, increasing Magnesium (r = 0.8465) and effective cation exchange capacity (r = 0.5899); axis 3, increasing effective cation exchange capacity (r = 0.5536); while axis 4, increasing Phosphorus concentration (r = 0.5232). Our results demonstrate the advantage which diversity profiles have over single or combination of indices, and the importance of using a combination of methodologies in diversity analysis. Résumé De février à mai 2008, vingt parcelles de Whittaker modifié ont été stratifiées à différents sites d'échantillonnage dans la zone centrale du Parc National de Korup, au Cameroun. Nous voulions évaluer la diversité floristique et étudier son lien avec diverses variables environnementales. Nous avons employé des profils de diversité et des courbes de rangs d'abondance pour l'analyse de la diversité, tandis que nous utilisions une analyse canonique des correspondances et des courbes de réponse des espèces pour étudier les relations entre les réponses et les variables explicatives. Sur les 66 familles identifiées, les Rubiacées (999 espèces) étaient les plus abondantes. Les Sterculiacées (surface basale = 10,482 m2 ha,1) étaient la famille dominante et, parmi les familles co-dominantes, il y avait les Ebénacées (surface basale = 9,092 m2 ha,1) et les Euphorbiacées (surface basale = 8,168 m2 ha,1). Des variables du sol expliquaient 54,3% de la variation totale de la distribution des familles. Les axes canoniques ont été liés aux différents gradients environnementaux; l'axe 1 était liéà une couverture croissante de la canopée (r = 0,6951); l'axe 2 à une augmentation du magnésium (r = 0,8465) et à la capacité réelle d'échange de cations (r = 0,5899); l'axe 3 à une capacité réelle croissante d'échanges de cations (r = 0,5536); et l'axe 4 à une concentration croissante en phosphore (r = 0,5532). Nos résultats montrent l'avantage que les profils de diversité ont sur des indices uniques ou combinés et l'importance d'utiliser une combinaison de méthodologies dans une analyse de diversité. [source] Exploring complex interactions in designed data using GEMANOVA.JOURNAL OF CHEMOMETRICS, Issue 6 2002Color changes in fresh beef during storage Abstract Data from a severely reduced experimental design are investigated in order to obtain detailed information on important factors affecting the changes in quality of meat during storage under different conditions. It is possible to model the response, meat color, using traditional ANOVA (analysis of variance) techniques, but the exploratory and explanatory value of this model is somewhat restricted owing to the number of factors and the fact that several interactions exist. For those reasons, it is not possible to visualize the model in a simple way and therefore not possible to have a clear overview of the total variation in the data. Using a recently suggested alternative to traditional analysis of variance, GEMANOVA (generalized multiplicative ANOVA), it is possible to analyze the data effectively and obtain a more interpretable solution that enables a simple overview of the whole sampling domain. Whereas traditional analysis of variance typically seeks a model with main effects and as few and simple interactions and cross-products as possible, the GEMANOVA model seeks to describe the data primarily by means of higher-order interactions, albeit in a straightforward way. The two approaches are thus complementary. It is shown that the GEMANOVA model is simple to interpret, primarily because the GEMANOVA structure is in agreement with the nature of the data. It is shown that the GEMANOVA model used is mathematically unique, which leads to attractive simplified ways of interpreting the model. The results presented are the first published results where the GEMANOVA model is not simply equivalent to an ordinary PARAFAC model, thus taking full advantage of the additional structural power of GEMANOVA. A new algorithm for fitting the GEMANOVA model is developed and is available from the authors. Copyright © 2002 John Wiley & Sons, Ltd. [source] Heritable variation and genetic correlation of quantitative traits within and between ecotypes of Avena barbataJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 3 2008K. M. GARDNER Abstract We examined heritable variation for quantitative traits within and between naturally occurring mesic and xeric ecotypes of the slender wild oat (Avena barbata), and in 188 recombinant inbred lines derived from a cross between the ecotypes. We measured a suite of seedling and adult traits in the greenhouse, as well as performance-related traits in field sites native to the two ecotypes. Although the ecotypes were genetically diverged for most traits, few traits showed significant heritable variation within either ecotype. In contrast, considerable heritable variation was released in the recombinant progeny of the cross, and transgressive segregation was apparent in all traits. Heritabilities were substantially greater in the greenhouse than in the field, and this was associated with an increase in environmental variance in the field, rather than a decrease in genetic variance. Strong genetic correlations were evident among the recombinants, such that 22 measured traits could be well represented by only seven underlying factors, which accounted for 80% of the total variation. The primary axis of variation in the greenhouse described a trade-off between vegetative and reproductive allocation, mediated by the date of first flowering, and fitness was strongly correlated with this trade-off. Other factors in the greenhouse described variation in size and in seedling traits. Lack of correlation among these factors represents the release of multivariate trait variation through recombination. In the field, a separate axis of variation in overall performance was found for each year/site combination. Performance was significantly correlated across field environments, but not significantly correlated between greenhouse and field. [source] The influence of common gene variants of the xenobiotic receptor (PXR) in genetic susceptibility to intrahepatic cholestasis of pregnancyALIMENTARY PHARMACOLOGY & THERAPEUTICS, Issue 5 2010G. CASTAÑO Aliment Pharmacol Ther,31, 583,592 Summary Background, The xenobiotic nuclear pregnane X receptor is implicated in many physiological pathways and diseases, including bile acid detoxification and cholestasis. Aim, To estimate the contribution of common gene variants of the xenobiotic receptor (pregnane X receptor, PXR) to genetic susceptibility to intrahepatic cholestasis of pregnancy. Methods, A total of 101 intrahepatic cholestasis of pregnancy patients and 171 healthy pregnant women in the third trimester of their pregnancies were included. Four tag single nucleotide polymorphisms (SNPs) (rs12488820 C/T, rs2472671 C/T, rs2461823 A/G, and rs1054191 A/G) encompassing 36 kb in chromosome 3, with a minor allele frequency ,0.10 and representing 33 polymorphic sites were genotyped. Besides these, three additional SNPs (rs3814057, rs6785049, and rs7643645) were included because they showed previous evidence of functionality. Results, Genotypic test for single SNPs showed that rs2461823 genotypes were significantly associated with intrahepatic cholestasis of pregnancy (P < 0.0069), OR per G allele: 1.44, 95% CI: 1.01,2.05, P < 0.042. The Cochran-Armitage test for trend and the allelic test showed a significant association with disease status (P < 0.04 and 0.03 respectively), G being the risk allele. A positive association between rs2461823 and ALT, AST, and bilirubin concentrations was observed. Neonate birth weight adjusted by the Capurro index was significantly associated with rs2461823 (P < 0.05); the proportion of the total variation attributed to rs2461823 genotypes was 7.8%. Conclusion, Common PXR polymorphisms may contribute to the genetic susceptibility to intrahepatic cholestasis of pregnancy. [source] Linkage analysis of factor VIII and von Willebrand factor loci as quantitative trait lociJOURNAL OF THROMBOSIS AND HAEMOSTASIS, Issue 8 2003M. C. H. De Visser Summary., Elevated factor (F)VIII levels contribute to venous thrombotic risk. FVIII levels are determined to a large extent by levels of von Willebrand factor (VWF), its carrier protein which protects FVIII against proteolysis. VWF levels are largely dependent on ABO blood group. Subjects with blood group non-O have higher VWF and FVIII levels than individuals with blood group O. Apart from ABO blood group no genetic determinants of high FVIII levels have been identified, whereas clustering of FVIII levels has been reported within families even after adjustment for ABO blood group and VWF levels. We investigated the FVIII and VWF loci as possible quantitative trait loci (QTL) influencing FVIII and VWF levels. Two sequence repeats in the FVIII gene and three repeats in the VWF gene were typed in 52 FV Leiden families. Multipoint sib-pair linkage analysis was performed with the MAPMAKER/SIBS program. FVIII levels adjusted for VWF levels and age, and VWF levels adjusted for ABO blood group and age, were used for this linkage analysis. No linkage of FVIII levels to the FVIII locus was found, whereas we found evidence that the VWF locus contains a QTL for VWF levels [maximum likelihood no dominance variance lod score = 0.70 (P = 0.04) and non-parametric Z-score = 1.92 (P = 0.03)]. About 20% of the total variation in VWF levels may be attributed to this VWF locus. [source] Functions of bounded variation and polarizationMATHEMATISCHE NACHRICHTEN, Issue 7 2009Angela Alberico Abstract It is known that, if u is a real valued function on ,N of bounded variation, then its total variation decreases under polarization. In this paper we identify the difference between the total variation of u and that one of its polar u, (© 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Pseudodifferential operators with compound non-regular symbolsMATHEMATISCHE NACHRICHTEN, Issue 9-10 2007Yu. I. Karlovich Abstract Let V (,) denote the Banach algebra of absolutely continuous functions of bounded total variation on ,. We study an algebra ,, of pseudodifferential operators of zero order with compound slowly oscillating V (,)-valued symbols (x, y) , a (x, y, ·) that satisfy a Lipschitz condition with respect to the spatial variables x, y , ,. Sufficient conditions for the boundedness and compactness of pseudodifferential operators with compound symbols on the Lebesgue spaces Lp(,), for p = 2 and 1 < p < ,, are obtained. A Fredholm criterion and an index formula for pseudodifferential operators A , ,, are presented. (© 2007 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Reliability of the long caseMEDICAL EDUCATION, Issue 9 2008Tim J Wilkinson Objectives, The use of long cases for summative assessment of clinical competence is limited by concerns about unreliability. This study aims to explore the reliability of long cases and how reliability is affected by supplementation with short cases. Methods, We performed a statistical analysis of examinations held by the Royal Australasian College of Physicians in 2005 and 2006 to determine overall reliability and sources of variance in reliability according to candidate ability, case difficulty and inter-examiner differences. Results, Scores for 546 long cases in 2005 and 773 long cases in 2006 were analysed. In 2006, 38% of the total variation in long case data was explained by variation in candidate ability, with other significant contributors to variance being candidate × case and candidate × examiner interactions. Similar figures were found for the 2005 examinations. A short case is less reliable than a long case, but when examiner time is taken into account, three short cases are as reliable as one long case. Any combination of short and long cases would require 4,5 hours of testing time in order to achieve dependability > 0.7. Conclusions, Long cases can be optimised for reliability but time limits their use as the sole tool in a high-stakes examination. Further examiner training, better case selection, or greater use of short cases would have minimal impact on reliability. Reliability can be improved by either increasing examination time or including additional methods of summative assessment, such as might be provided by workplace assessment. [source] Leaning into the Wind: A Structural VAR Investigation of UK Monetary Policy,OXFORD BULLETIN OF ECONOMICS & STATISTICS, Issue 5 2005Andrew Mountford Abstract This paper adapts Uhlig's [Journal of Monetary Economics (2005) forthcoming] sign restriction identification methodology to investigate the effects of UK monetary policy using a structural vector autoregression (VAR). It shows that shocks which can reasonably be described as monetary policy shocks have played only a small role in the total variation of UK monetary and macroeconomic variables. Most of the variation in UK monetary variables has been due to their systematic reaction to other macroeconomic shocks, namely non-monetary aggregate demand, aggregate supply, and oil price shocks. We also find, without imposing any long run identifying restrictions, that aggregate supply shocks have permanent effects on output. [source] Generalized self-efficacy and performance on the 20-metre shuttle run in childrenAMERICAN JOURNAL OF HUMAN BIOLOGY, Issue 2 2008John Cairney It has been argued that motivation significantly affects the measurement of aerobic capacity when using field tests with children. In this study, the impact of generalized self-efficacy on performance (Stage Completed) in the Léger shuttle run is examined in a cohort of children (N = 2,245, 9.38 ± 0.52 years old) in Grade 4 from 75 elementary schools. Children completed the Children's Self-perceptions of Adequacy in and Predilection for Physical Activity scale (CSAPPA) to establish levels of generalized self-efficacy toward physical activity, were measured for height and weight, and then completed the Léger Shuttle run to predict aerobic capacity. Regression analysis was used to study the impact of self-efficacy on test performance. After adjusting for age, gender, and BMI, two of the three CSAPPA factor subscales, higher perceived adequacy regarding physical activity (, = 0.196, P < 0.001) and greater predilection to select physical over sedentary activities (, = 0.123, P < 0.001), were independently associated with better test performance as indicated by stage completed. Together, self-efficacy accounted for 9% of the total variation in Léger shuttle run performance. A significant interaction between BMI and perceived adequacy was found (, = ,0.106, P < 0.005). Children with both high BMI scores and below average perceived adequacy had the poorest performance results. Generalized self-efficacy, as measured by the CSAPPA, is significantly related to Léger shuttle run performance. Moreover, self-efficacy influences the relationship between other known factors affecting test performance (BMI), suggesting that self-perception of ability/competence has a complex effect on test performance. These results illustrate the importance of considering psychological factors when interpreting physiologic assessments in children. Am. J. Hum. Biol., 2008. © 2007 Wiley-Liss, Inc. [source] Adjustment of leaf photosynthesis to shade in a natural canopy: reallocation of nitrogenPLANT CELL & ENVIRONMENT, Issue 3 2005H. EICHELMANN ABSTRACT The present study was performed to investigate the adjustment of the constituents of the light and dark reactions of photosynthesis to the natural growth irradiance in the leaves of an overstorey species, Betula pendula Roth, a subcanopy species Tilia cordata P. Mill., and a herb Solidago virgaurea L. growing in a natural plant community in Järvselja, Estonia. Shoots were collected from the site and properties of individual leaves were measured in a laboratory, by applying a routine of kinetic gas exchange and optical measurements that revealed photosystem II (PSII), photosystem I (PSI), and cytochrome b6f densities per leaf area and the distribution of excitation (or chlorophyll, Chl) between the two photosystems. In parallel, N, Chl and ribulose-bisphosphate carboxylase-oxygenase (Rubisco) content was measured from the same leaves. The amount of N in photosynthetic proteins was calculated from the measured contents of the components of the photosynthetic machinery. Non-photosynthetic N was found as the residual of the budget. Growth in shade resulted in the decrease of leaf dry mass to a half of the DW in sun leaves in each species, but the total variation, from the top to the bottom of the canopy, was larger. Through the whole cross-section of the canopy, leaf dry weight (DW) and Rubisco content per area decreased by a factor of four, N content by a factor of three, but Chl content only by a factor of 1.7. PSII density decreased by a factor of 1.9, but PSI density by a factor of 3.2. The density of PSI adjusted to shade to a greater extent than the density of PSII. In shade, the distribution of N between the components of the photosynthetic machinery was shifted toward light-harvesting proteins at the expense of Rubisco. Non-photosynthetic N decreased the most substantially, from 54% in the sun leaves of B. pendula to 11% in the shade leaves of T. cordata. It is concluded that the redistribution of N toward light-harvesting Chl proteins in shade is not sufficient to keep the excitation rate of a PSII centre invariant. Contrary to PSII, the density of PSI , the photosystem that is in immediate contact with the carbon assimilation system , shade-adjusts almost proportionally with the latter, whereas its Chl antenna correspondingly increases. Even under N deficiency, a likely condition in the natural plant community, a substantial part of N is stored in non-photosynthetic proteins under abundant irradiation, but much less under limiting irradiation. At least in trees the general sequence of down-regulation due to shade adjustment is the following: (1) non-protein cell structures and non-photosynthetic proteins; (2) carbon assimilation proteins; (3) light reaction centre proteins, first PSI; and (4) chlorophyll-binding proteins. [source] Analyses of RAPD data for detection of host specialization in Sclerotinia homoeocarpaPLANT PATHOLOGY, Issue 2 2000T. Hsiang Upgma analysis, principal component analysis, genetic diversity analysis and genetic distance analysis of RAPD data were used to assess the extent of host specialization in 50 isolates of S. homoeocarpa from five turfgrass hosts. In upgma analysis and principal component analysis, the occurrence of host specialization was not readily apparent based on visual inspection. Genetic diversity analysis showed significant differentiation among isolates from different host species (GST = 0.34, P < 0.001). The strongest evidence for some degree of host specialization came from the statistical analysis of genetic distances among isolates. By grouping pairwise genetic distances between isolates based on their host species, and analysing for average distance within the same host species and among different host species, it was found that the average distance within species was less than among species (P < 0.0001). An analysis of molecular variance of the genetic distances among isolates found that 32.3% of the total variation was attributable to host species. It is concluded that these isolates of S. homoeocarpa showed a weak level of host specialization, which was not readily apparent by upgma or principal component analyses, but was revealed by genetic diversity analysis and statistical analysis of genetic distances among isolates. Inoculation tests on different host species and tests using a greater number of isolates are required to confirm the extent of specialization. [source] The simple random walk and max-degree walk on a directed graphRANDOM STRUCTURES AND ALGORITHMS, Issue 3 2009Ravi Montenegro Abstract We bound total variation and L, mixing times, spectral gap and magnitudes of the complex valued eigenvalues of general (nonreversible nonlazy) Markov chains with a minor expansion property. The resulting bounds for the (nonlazy) simple and max-degree walks on a (directed) graph are of the optimal order. It follows that, within a factor of two or four, the worst case of each of these mixing time and eigenvalue quantities is a walk on a cycle with clockwise drift. © 2008 Wiley Periodicals, Inc. Random Struct. Alg., 2009 [source] Slippage in futures markets: Evidence from the Sydney Futures ExchangeTHE JOURNAL OF FUTURES MARKETS, Issue 12 2005Alex Frino This article examines the market-impact cost of trades executed in futures markets, which is commonly referred to as slippage. With the use of a unique data set provided by the Sydney Futures Exchange, this article documents that slippage costs incurred in executing packages of trades in stock-index and interest-rate futures markets are significantly smaller than market-impact costs documented previously for equity markets. Furthermore, in contrast to research based on equity markets, there is little evidence that trade packages executed in futures markets convey information, or that purchases and sales behave differently. In fact, the evidence presented in this article implies that slippage in futures markets is entirely a liquidity cost, and symmetrical for purchases and sales. This is consistent with previous work, which conjectures that there is an absence of private information in stock-index and interest-rate futures markets. Finally, analogously to previous research, there is some evidence that trade size and the identity of traders are determinants of slippage; however, these variables explain less than 10% of the total variation in slippage. © 2005 Wiley Periodicals, Inc. Jrl Fut Mark 25:1129,1146, 2005 [source] Genetic diversity of Hungarian indigenous chicken breeds based on microsatellite markersANIMAL GENETICS, Issue 4 2009N. Bodzsar Summary Six local chicken breeds are registered in Hungary and are regarded as Hungarian national treasures: Hungarian White, Yellow and Speckled, and Transylvanian Naked Neck White, Black and Speckled. Three Hungarian academic institutes have maintained these genetic resources for more than 30 years. The Hungarian Yellow, the Hungarian Speckled and the Transylvanian Naked Neck Speckled breeds were kept as duplicates in two separate subpopulations since time of formation of conservation flocks at different institutes. In this study, we investigated genetic diversity of these nine Hungarian chicken populations using 29 microsatellite markers. We assessed degree of polymorphism and relationships within and between Hungarian breeds on the basis of molecular markers, and compared the Hungarian chicken populations with commercial lines and European local breeds. In total, 168 alleles were observed in the nine Hungarian populations. The FST estimate indicated that about 22% of the total variation originated from variation between the Hungarian breeds. Clustering using structure software showed clear separation between the Hungarian populations. The most frequent solutions were found at K = 5 and K = 6, respectively, classifying the Transylvanian Naked Neck breeds as a separate group of populations. To identify genetic resources unique to Hungary, marker estimated kinships were estimated and a safe set analysis was performed. We show that the contribution of all Hungarian breeds together to the total diversity of a given set of populations was lower when added to the commercial lines than when added to the European set of breeds. [source] Inferring Continental Ancestry of Argentineans from Autosomal, Y-Chromosomal and Mitochondrial DNAANNALS OF HUMAN GENETICS, Issue 1 2010Daniel Corach Summary We investigated the bio-geographic ancestry of Argentineans, and quantified their genetic admixture, analyzing 246 unrelated male individuals from eight provinces of three Argentinean regions using ancestry-sensitive DNA markers (ASDM) from autosomal, Y and mitochondrial chromosomes. Our results demonstrate that European, Native American and African ancestry components were detectable in the contemporary Argentineans, the amounts depending on the genetic system applied, exhibiting large inter-individual heterogeneity. Argentineans carried a large fraction of European genetic heritage in their Y-chromosomal (94.1%) and autosomal (78.5%) DNA, but their mitochondrial gene pool is mostly of Native American ancestry (53.7%); instead, African heritage was small in all three genetic systems (<4%). Population substructure in Argentina considering the eight sampled provinces was very small based on autosomal (0.92% of total variation was between provincial groups, p = 0.005) and mtDNA (1.77%, p = 0.005) data (none with NRY data), and all three genetic systems revealed no substructure when clustering the provinces into the three geographic regions to which they belong. The complex genetic ancestry picture detected in Argentineans underscores the need to apply ASDM from all three genetic systems to infer geographic origins and genetic admixture. This applies to all worldwide areas where people with different continental ancestry live geographically close together. [source] Posturographic description of the regaining of postural stability following strokeCLINICAL PHYSIOLOGY AND FUNCTIONAL IMAGING, Issue 1 2005Henrik Rogind Summary Background:, Failing balance and increased liability to falling are common complaints among hemiplegic subjects. During rehabilitation much effort is put into regaining postural stability. Purpose:, To describe the regaining of postural stability during rehabilitation for the first year following stroke in hemiplegic patients Materials and methods:, Twenty-six patients were included within 5 days of suffering a stroke resulting from a CT-verified clearly defined thromboembolic lesion, localized in the vascular bed of middle cerebral artery on either side. Posturographic evaluation of sway was performed on a commercially available force plate system (Balance Master Pro®). Measured parameters included per cent maximum stability (PMS), per cent ankle strategy (AST), and average angular velocity (AVE). An additional parameter was derived by calculating the slope (SLP) of the linear relationship between stability and ankle strategy. SLP reflects the predisposition of the stroke patient to keep using ankle strategy when faced with increasingly difficult balance tasks. The presence of familiarization to the measurement method was examined by including a preliminary measurement not otherwise included in the analysis of changes during the first year of follow-up. The temporal evolvement of sway was described by measuring sway parameters 1, 2, 4, 8 and 52 weeks following stroke. The proportions of the variation in sway caused by measurement error and between patients were compared. Results:, All parameters improved over time, as demonstrated by significant improvements from each of week 1, 2, 4 and 8 to week 52. There was evidence of familiarisation for PMS, AST and AVE, but not for SLP. Estimation of variance components showed that between patient variation accounts for between two-thirds and four-fifths of the total variation. A considerable part of this variation was caused by individual differences in the temporal improvement of sway over time. Patients considered the evaluation of postural sway demanding and time consuming resulting in a relatively large loss to follow-up: 15 patients completed the 8-week visit while seven completed the 1 year visit. Conclusion:, Postural stability increases for the first year following stroke. There is evidence of familiarization towards the measurements process for the traditional posturographic parameters PMS, AST and AVE, but not for the derived parameter SLP, which might make the latter a candidate for a sway parameter reflecting basic mechanisms of upholding upright stance in hemiplegic patients. The estimated variance components stress the considerable between-patient variation and question the ability of the force plate method to monitor individual sway performance of such patients during the rehabilitation process. [source] Hyperbolic limit of the Jin-Xin relaxation modelCOMMUNICATIONS ON PURE & APPLIED MATHEMATICS, Issue 5 2006Stefano Bianchini We consider the special Jin-Xin relaxation model We assume that the initial data () are sufficiently smooth and close to () in L, and have small total variation. Then we prove that there exists a solution () with uniformly small total variation for all t , 0, and this solution depends Lipschitz-continuously in the L1 norm with respect to time and the initial data. Letting , the solution converges to a unique limit, providing a relaxation limit solution to the quasi-linear, nonconservative system These limit solutions generate a Lipschitz semigroup on a domain containing the functions with small total variation and close to . This is precisely the Riemann semigroup determined by the unique Riemann solver compatible with (0.1). © 2005 Wiley Periodicals, Inc. [source] | |||||||||||||||||||||||||||||||||||||