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Textural Features (textural + feature)
Selected AbstractsNuclear morphometry and texture analysis of B-cell non-Hodgkin lymphoma: Utility in subclassification on cytosmearsDIAGNOSTIC CYTOPATHOLOGY, Issue 2 2010Shilpa Gupta M.D. Abstract Non-Hodgkin lymphoma (NHL) is a heterogeneous group of lymphoid neoplasms and accurate subclassification is an essential prerequisite for proper management of patients. This study was aimed at evaluating the utility of nuclear morphometry and textural features on cytology smears to classify the cases of NHL on aspiration cytology. Fine needle aspiration smears of 50 cases of B-cell NHL were included. Various morphometric and texture parameters were obtained by manually tracing the nuclei on digitized images in each case and discriminant analysis performed using various features taken individually as well as all together. The percentage of cells correctly classified to a particular NHL subtype using the discriminant functions so obtained was noted. Our results show that discriminant analysis done on size parameters could correctly classify a greater number of cells than on shape parameters (36.4% vs. 21.2%, respectively). Texture parameters based on single pixel values (first order texture) were inferior (42.8%) to those based on pair of pixels (58.7%) in subtyping of cells. Discriminant analysis based on color parameters was more effective (61.9%) as compared to rest of the morphometric and textural parameters. Using all the morphometric and textural parameters together, 83.3% of cells could be correctly classified to a particular NHL subtype. The present study, perhaps the first study of detailed morphometric analysis on cytosmears, shows that satisfactory classification of NHL on aspiration cytology is possible using nuclear morphometry and textural parameters considered together. These results are promising for further studies on this subject and development of automated cytodiagnosis. Diagn. Cytopathol. 2010. © 2009 Wiley-Liss, Inc. [source] Long-range connectivity of mouse primary somatosensory barrel cortexEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 12 2010Rachel Aronoff Abstract The primary somatosensory barrel cortex processes tactile vibrissae information, allowing rodents to actively perceive spatial and textural features of their immediate surroundings. Each whisker on the snout is individually represented in the neocortex by an anatomically identifiable ,barrel' specified by the segregated termination zones of thalamocortical axons of the ventroposterior medial nucleus, which provide the primary sensory input to the neocortex. The sensory information is subsequently processed within local synaptically connected neocortical microcircuits, which have begun to be investigated in quantitative detail. In addition to these local synaptic microcircuits, the excitatory pyramidal neurons of the barrel cortex send and receive long-range glutamatergic axonal projections to and from a wide variety of specific brain regions. Much less is known about these long-range connections and their contribution to sensory processing. Here, we review current knowledge of the long-range axonal input and output of the mouse primary somatosensory barrel cortex. Prominent reciprocal projections are found between primary somatosensory cortex and secondary somatosensory cortex, motor cortex, perirhinal cortex and thalamus. Primary somatosensory barrel cortex also projects strongly to striatum, thalamic reticular nucleus, zona incerta, anterior pretectal nucleus, superior colliculus, pons, red nucleus and spinal trigeminal brain stem nuclei. These long-range connections of the barrel cortex with other specific cortical and subcortical brain regions are likely to play a crucial role in sensorimotor integration, sensory perception and associative learning. [source] Phlogopite and quartz lamellae in diamond-bearing diopside from marbles of the Kokchetav massif, Kazakhstan: exsolution or replacement reaction?JOURNAL OF METAMORPHIC GEOLOGY, Issue 9 2009L. F. DOBRZHINETSKAYA Abstract Exsolution lamellae of pyroxene in garnet (grt), coesite in titanite and omphacite from UHPM terranes are widely accepted as products of decompression. However, interpretation of oriented lamellae of phyllosilicates, framework silicates and oxides as a product of decompression of pyroxene is very often under debate. Results are presented here of FIB-TEM, FEG-EMP and synchrotron-assisted infrared (IR) spectroscopy studies of phlogopite (Phlog) and phlogopite + quartz (Qtz) lamellae in diamond-bearing clinopyroxene (Cpx) from ultra-high pressure (UHP) marble. These techniques allowed collection of three-dimensional information from the grain boundaries of both the single (phlogopite), two-phase lamellae (phlogopite + quartz), and fluid inclusions inside of diamond included in K-rich Cpx and understanding their relationships and mechanisms of formation. The Cpx grains contain in their cores lamellae-I, which are represented by topotactically oriented extremely thin lamellae of phlogopite (that generally are two units cell wide but locally can be seen to be somewhat broader) and microdiamond. The core composition is: (Ca0.94K0.04Na0.02) (Al0.06Fe0.08Mg0.88) (Si1.98Al0.02)O6.00. Fluid inclusions rich in K and Si are recognized in the core of the Cpx, having no visible connections to the lamellae-I. Lamellar-II inclusions consist of micron-size single laths of phlogopite and lens-like quartz or slightly elongated phlogopite + quartz intergrowths; all are situated in the rim zone of the Cpx. The composition of the rim is (Ca0.95Fe0.03Na0.02) (Al0.05Fe0.05Mg0.90)Si2O6, and the rim contains more Ca, Mg then the core, with no K there. Such chemical tests support our microstructural observations and conclusion that the phlogopite lamellae-I are exsolved from the K-rich Cpx-precursor during decompression. It is assumed that Cpx-precursor was also enriched in H2O, because diamond included in the core of this Cpx contains fluid inclusions. The synchrotron IR spectra of such diamond record the presence of OH, stretching and H2O bending motion regions. Lamellar-II inclusions are interpreted as forming partly because of modification of the lamellae-I in the presence of fluid enriched in K, Fe and Si during deformation of the host diopside; the latter is probably related to the shallower stage of exhumation of the UHP marble. This study emphasizes that in each case to understand the mechanism of lamellar inclusion formation more detailed studies are needed combining both compositional, structural and three-dimensional textural features of lamellar inclusions and their host. [source] Textural analysis of contrast-enhanced MR images of the breastMAGNETIC RESONANCE IN MEDICINE, Issue 1 2003Peter Gibbs Abstract Texture analysis was applied to high-resolution, contrast-enhanced (CE) images of the breast to provide a method of lesion discrimination. Significant differences were seen between benign and malignant lesions for a number of textural features, including entropy and sum entropy. Using logistic regression analysis (LRA), a diagnostic accuracy of Az = 0.80 ± 0.07 was obtained with a model requiring only three parameters. By initially dividing the patient data into training and test datasets, reasonable model robustness was also established. On combining features obtained using textural analysis with lesion size, time to maximum enhancement, and patient age, a diagnostic accuracy of Az = 0.92 ± 0.05 was demonstrated. Magn Reson Med 50:92,98, 2003. © 2003 Wiley-Liss, Inc. [source] Primary colorectal carcinomas and their intrapulmonary metastases: Clinical, glyco-, immuno- and lectin histochemical, nuclear and syntactic structure analysis with emphasis on correlation with period of occurrence of metastases and survivalAPMIS, Issue 6 2002Klaus Kayser Background. The aim of the study was to correlate clinical factors (disease-free interval/survival) with growth pattern in terms of structural entropy of patients with primary colorectal carcinomas and secondary lung lesions. Methods. Proliferation and apoptosis markers as well as determinants involved in information transfer by protein-carbohydrate interactions were monitored. The clinical history, surgical and histopathological reports, tumor load, survival of the patients with a maximum follow-up of 14 years, and sections of paraffin blocks of 60 colorectal carcinoma specimens and their pulmonary metastases were examined. Measurements of the staining intensities after processing sections of primary and secondary carcinomas with the marker panel and calculations of syntactic structure and stereological parameters were performed. Results. The majority of primary tumors (80%, 49/60) were surgically treated at advanced tumor stages (pT3/pT4), with detectable lymph node involvement (34/60). Lung metastases were resected after a median disease-free interval of 30.5 months, an average of 3.0 metastases adding up to a mean intrapulmonary tumor load of 9.98 ccm. The median survival was calculated to be 82 months after resection of the colon/rectal carcinomas and 40 months after that of intrapulmonary metastases. It was correlated with certain structural and vascular features such as vascular circumference. The proliferation index and several textural features were strongly associated with vascularization in primary and secondary tumors. Conclusions. Despite intra- and interindividual variations, vascularization properties and features such as bcl-2 positivity and CEA- and galectin-3-associated structural entropy in primary tumors or metastases are described as independent prognostic features. Absence of lymph node involvement or limited tumor stages of colon/rectal carcinomas should not exclude patients from thorough postsurgical scrutiny to detect lung metastases. 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