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Taxonomic Identity (taxonomic + identity)
Selected AbstractsEcological Traits Predicting Amphibian Population Declines in Central AmericaCONSERVATION BIOLOGY, Issue 4 2003Karen R. Lips Populations of some species are extirpated, others have declined but survive, some have not obviously declined, and some are increasing. If amphibian populations at multiple sites were affected by the same factors, then surviving species should share traits that promote persistence, whereas declining species should share traits that promote susceptibility. Identifying these traits can help diagnose potential causes and thus help to direct conservation actions. Using logistic regression, we quantified the vulnerability of amphibian populations in four areas in Central America. We analyzed a species-specific database of taxonomic identity, geographic and elevational range, elevational distribution, adult and larval habitat, activity period, and maximum adult body size. We found that ( 1 ) all four sites exhibited the same pattern of decline ( there were no interactions between site and other variables ); ( 2 ) declining populations shared aquatic habitats, restricted elevational ranges, and large body sizes; and ( 3 ) there was an interaction between body size and elevational range. The most significant variable in the model was lifetime aquatic index, a factor unrelated to demographic vulnerability and one that therefore might indicate the potential causative agent( s ). Our results provide a predictive model with which to assess potential causes of population declines in other areas, and we generated a list of 52 species predicted to decline at a currently unaffected site in central Panama. Resumen: Las poblaciones de anfibios están declinando en todos los continentes donde ocurren, pero no todas las especies han sido afectadas por igual. Algunas especies han sido extirpadas, otras han declinado pero sobreviven, algunas no han declinado notablemente y otras están aumentando. Si las poblaciones de anfibios en varios sitios fueran afectadas por los mismos factores, las especies sobrevivientes deberían compartir características que promuevan la persistencia mientras que las especies en declinación deberían compartir características que promuevan la susceptibilidad. La identificación de estas características puede ayudar a diagnosticar las causas potenciales y así ayudar a dirigir medidas de conservación. Utilizando regresión logística, cuantificamos la vulnerabilidad de las poblaciones de anfibios en cuatro áreas de Centro América. Analizamos una base de datos de identidad taxonómica de especies, rango geográfico y altitudinal, distribución altitudinal, hábitat de larvas y adultos, período de actividad y máxima talla corporal de adultos. Encontramos que ( 1 ) los cuatro sitios presentaron el mismo patrón de declinación ( no hubo interacciones entre el sitio y otras variables ), ( 2 ) las poblaciones en declinación compartieron hábitats acuáticos, rangos altitudinales restringidos y tamaño corporal grande y ( 3 ) hubo interacción entre el tamaño corporal y el rango altitudinal. La variable más significativa del modelo fue el índice de vida acuática, un factor no relacionado con la vulnerabilidad demográfica y que, por lo tanto, podría indicar el agente causal potencial. Nuestros resultados proporcionan un modelo predictivo para evaluar las causas potenciales de declinación poblacional en otras áreas, y generamos una lista de 52 especies de declinación prevista en un sitio actualmente no afectado del centro de Panamá. [source] Typological thinking and the conservation of subspecies: the case of the San Clemente Island loggerhead shrikeDIVERSITY AND DISTRIBUTIONS, Issue 4 2000Michael A. Patten Abstract. ,Hybridization with closely related taxa poses a significant threat to endangered subspecies (e.g. outbreeding depression, inbreeding) and confounds efforts to manage and conserve these taxa through a loss of taxonomic identity, in part because of the practical necessity of defining subspecies in a typological manner. We examined nine morphological characters in 167 post-juvenile museum specimens to determine if loggerhead shrikes Lanius ludovicianus Linnaeus 1766 on San Clemente Island (off the coast of California) remain diagnosable as L. l. mearnsi Ridgway (1903); an island endemic listed as endangered by the United States Fish and Wildlife Service. Four recent shrike specimens from the island were compared to historical specimens using a bivariate scatter plot and a discriminant function (the latter was used to classify recent specimens post hoc). The few recent specimens were not diagnosable as L. l. mearnsi, but instead appear to be intergrades between L. l. mearnsi and L. l. anthonyi Mearns 1898 (the subspecies endemic to Santa Cruz, Santa Catalina, Santa Rosa and Anacapa islands), and are perhaps closer to pure anthonyi. Our data and the species' natural history and distribution suggest that shrikes currently on San Clemente Island are the result of genetic ,swamping' of mearnsi by anthonyi. Under a necessarily typological definition of a subspecies, it is evident that mearnsi is probably no longer diagnosable. However, we conclude that protection of the entire Channel Islands population of the loggerhead shrike would be the best management strategy, as the species has declined drastically throughout the islands. [source] Dynamics of marine bacterial and phytoplankton populations using multiplex liquid bead array technologyENVIRONMENTAL MICROBIOLOGY, Issue 4 2010Xavier Mayali Summary Heterotrophic bacteria and phytoplankton dominate the biomass and play major roles in the biogeochemical cycles of the surface ocean. Here, we designed and tested a fast, high-throughput and multiplexed hybridization-based assay to detect populations of marine heterotrophic bacteria and phytoplankton based on their small subunit ribosomal DNA sequences. The assay is based on established liquid bead array technology, an approach that is gaining acceptance in biomedical research but remains underutilized in ecology. End-labelled PCR products are hybridized to taxon-specific oligonucleotide probes attached to fluorescently coded beads followed by flow cytometric detection. We used ribosomal DNA environmental clone libraries (a total of 450 clones) and cultured isolates to design and test 26 bacterial and 10 eukaryotic probes specific to various ribotypes and genera of heterotrophic bacteria and eukaryotic phytoplankton. Pure environmental clones or cultures were used as controls and demonstrated specificity of the probes to their target taxa. The quantitative nature of the assay was demonstrated by a significant relationship between the number of target molecules and fluorescence signal. Clone library sequencing and bead array fluorescence from the same sample provided consistent results. We then applied the assay to a 37-day time series of coastal surface seawater samples from the Southern California Bight to examine the temporal dynamics of microbial communities on the scale of days to weeks. As expected, several bacterial phylotypes were positively correlated with total bacterial abundances and chlorophyll a concentrations, but others were negatively correlated. Bacterial taxa belonging to the same broad taxonomic groups did not necessarily correlate with one another, confirming recent results suggesting that inferring ecological role from broad taxonomic identity may not always be accurate. [source] Brine shrimp bioassay: Importance of correct taxonomic identification of Artemia (Anostraca) speciesENVIRONMENTAL TOXICOLOGY, Issue 4 2008David R. Ruebhart Abstract Despite the common use of the brine shrimp bioassay in toxicology, there is confusion in the literature regarding citation of the correct taxonomic identity of the Artemia species used. The genus Artemia, once thought to be represented by a single species Artemia salina, is now known to be composed of several bisexual species as well as parthenogenetic populations. Artemia franciscana is the best studied of the Artemia species and is considered to represent the vast majority of studies in which Artemia is used as an experimental test organism. We found that in studies referring to the use of A. salina, the zoogeography of the cyst harvest site indicated that the species used was actually A. franciscana. Those performing bioassays with Artemia need to exercise diligence in assigning correct species identification, as the identity of the test organism is an important parameter in assuring the validity of the results of the assay. © 2008 Wiley Periodicals, Inc. Environ Toxicol, 2008. [source] Identification and characterization of the n -6 fatty acid-producing Mucor rouxii native isolate CFR-G15EUROPEAN JOURNAL OF LIPID SCIENCE AND TECHNOLOGY, Issue 3 2010Shivaramu S. Mamatha Abstract In zygomycetes fungi, many Mucor spp. have been known to produce ,-linolenic acid (GLA) in their biomass. Among 250 soil samples screened, 20 Mucor isolates showed GLA in their mycelial mass under normal cultivation conditions. Sudan Black,B was used for screening their qualitative oleaginesity. Among the representative isolates, Mucor sp. CFR-G15, when grown in a fat-producing medium, showed a maximum lipid content of 30,±,1.32% in its mycelia and 14.42,±,0.74% GLA. By using gene-specific primers, the 18S rRNA gene and the ,6,DES gene were amplified by PCR technique. The nucleotide sequences of the 18S rRNA and ,6,DES genes exhibited >98% homology with M.,rouxii ATCC 24905 (accession nos. AF117923 and AF296076, respectively), suggesting taxonomic identity. The native isolate M.,rouxii CFR-G15 reported in this study was found to be promising for the development of an economical process in the industrial production of GLA. [source] Ecological responses to altered flow regimes: a literature review to inform the science and management of environmental flowsFRESHWATER BIOLOGY, Issue 1 2010N. LEROY POFF Summary 1.,In an effort to develop quantitative relationships between various kinds of flow alteration and ecological responses, we reviewed 165 papers published over the last four decades, with a focus on more recent papers. Our aim was to determine if general relationships could be drawn from disparate case studies in the literature that might inform environmental flows science and management. 2.,For all 165 papers we characterised flow alteration in terms of magnitude, frequency, duration, timing and rate of change as reported by the individual studies. Ecological responses were characterised according to taxonomic identity (macroinvertebrates, fish, riparian vegetation) and type of response (abundance, diversity, demographic parameters). A ,qualitative' or narrative summary of the reported results strongly corroborated previous, less comprehensive, reviews by documenting strong and variable ecological responses to all types of flow alteration. Of the 165 papers, 152 (92%) reported decreased values for recorded ecological metrics in response to a variety of types of flow alteration, whereas 21 papers (13%) reported increased values. 3.,Fifty-five papers had information suitable for quantitative analysis of ecological response to flow alteration. Seventy per cent of these papers reported on alteration in flow magnitude, yielding a total of 65 data points suitable for analysis. The quantitative analysis provided some insight into the relative sensitivities of different ecological groups to alteration in flow magnitudes, but robust statistical relationships were not supported. Macroinvertebrates showed mixed responses to changes in flow magnitude, with abundance and diversity both increasing and decreasing in response to elevated flows and to reduced flows. Fish abundance, diversity and demographic rates consistently declined in response to both elevated and reduced flow magnitude. Riparian vegetation metrics both increased and decreased in response to reduced peak flows, with increases reflecting mostly enhanced non-woody vegetative cover or encroachment into the stream channel. 4.,Our analyses do not support the use of the existing global literature to develop general, transferable quantitative relationships between flow alteration and ecological response; however, they do support the inference that flow alteration is associated with ecological change and that the risk of ecological change increases with increasing magnitude of flow alteration. 5.,New sampling programs and analyses that target sites across well-defined gradients of flow alteration are needed to quantify ecological response and develop robust and general flow alteration,ecological response relationships. Similarly, the collection of pre- and post-alteration data for new water development programs would significantly add to our basic understanding of ecological responses to flow alteration. [source] Resource quality and stoichiometric constraints on stream ecosystem functioningFRESHWATER BIOLOGY, Issue 5 2009SALLY HLADYZ Summary 1. Resource quality and stoichiometric imbalances in carbon : nutrient ratios between consumers and resources can influence key ecosystem processes. In many streams, this has important implications for food webs that are based largely upon the utilization of terrestrial leaf-litter, which varies widely among litter types in its value as a food source for detritivores and as a substrate for microbial decomposers. 2. We measured breakdown rates and macroinvertebrate colonization of leaf-litter from a range of native and exotic plants of differing resource quality and palatability to consumers [e.g. carbon : nitrogen : phosphorus (C : N : P) ratios, lignin and cellulose content], in a field experiment. We also measured C : N : P ratios of the principal leaf-shredding invertebrates, which revealed strong stoichiometric imbalances across trophic levels: C : N and C : P ratios typically differed by at least one order of magnitude between consumers and resources, whereas N : P imbalances were less marked. Application of the threshold elemental ratio approach, which integrates animal bioenergetics and body elemental composition in examining nutrient deficiency between consumers and resources, revealed less marked C : P imbalances than those based on the simpler arithmetic differences described above. 3. Litter breakdown rates declined as nutrient imbalances widened and resource quality fell, but they were independent of whether resources were exotic or native. The principal drivers of total, microbial and invertebrate-mediated breakdown rates were lignin : N, lignin : P and fungal biomass, respectively. However, multiple regression using orthogonal predictors yielded even more efficient models of litter breakdown, as consumers responded to more than one aspect of resource quality. For example, fungal biomass and litter C : N both influenced invertebrate-mediated breakdown. 4. Large stoichiometric imbalances and changes in resource quality are likely to have serious consequences for stream ecosystem functioning, especially when riparian zones have been invaded by exotic plant species whose chemical composition differs markedly from that of the native flora. Consequently, the magnitude and direction of change in breakdown rates and, thus, resource depletion, will be driven to a large extent by the biochemical traits (rather than taxonomic identity per se) of the resident and invading flora. [source] The utility of tooth enamel microstructure in identifying isolated dinosaur teethLETHAIA, Issue 3 2010SUNNY H. HWANG Hwang, S.H. 2010: The utility of tooth enamel microstructure in identifying isolated dinosaur teeth. Lethaia, Vol. 43, pp. 307,322. The identification of isolated dinosaur teeth is frequently an uncertain process because dinosaur teeth are simple in morphology compared to those of mammals. Teeth among genera and species within major dinosaur clades are often identical, and damage or abrasion of teeth further complicates their identification. To aid diagnosis of isolated teeth, systematic descriptions of dinosaur teeth have been compiled, and quantitative morphometric identification methods have also been developed. However, these aids work best with relatively intact teeth. Enamel microstructure, in contrast, can be used to identify the minutest of tooth fragments as long as the entire enamel thickness, often <100 ,m, is preserved. In addition, enamel microstructure can be used to differentiate isolated teeth that are similar in morphology but have different enamel, such as ankylosaur and posterior pachycephalosaurid or basal theropod and tyrannosaurid teeth. To evaluate the efficacy of enamel microstructure as an identification tool, nine isolated dinosaur teeth, specimens originally identified as ,Carnosauria' indet., Theropoda indet., Nanotyrannus sp., Tyrannosauridae indet., Troodontidae indet., Pachycephalosauridae indet., Hadrosaurinae indet. and cf. Thescelosaurus sp., were sectioned and their enamel examined using scanning electron microscopy. Upon inspection of their enamel microstructure, three of the specimens could be identified to genus, and the taxonomic identity of all the specimens were better understood. While enamel microstructure may not always constrain the identity of an indeterminate tooth to the generic or species level, it usually allows for a more accurate identification. ,Dinosaur teeth, enamel microstructure, taxonomic identification, microfossils. [source] Ancestry and divergence of subtropical montane forest isolates: molecular biogeography of the genus Abies (Pinaceae) in southern México and GuatemalaMOLECULAR ECOLOGY, Issue 10 2008JUAN P. JARAMILLO-CORREA Abstract The genus Abies has a complex history in southern México and Guatemala. In this region, four closely related species, Abies flinckii, A. guatemalensis, A. hickelii, and A. religiosa, are distributed in fragmented and isolated montane populations. Range-wide genetic variation was investigated across species using cytoplasmic DNA markers with contrasted inheritance. Variation at two maternally inherited mitochondrial DNA markers was low. All species shared two of the nine mitotypes detected, while the remaining seven mitochondrial DNA types were restricted to a few isolated stands. Mitochondrial genetic differentiation across taxa was high (GST = 0.933), it was not related to the taxonomic identity (amova; P > 0.05) of the populations, and it was not phylogeographically structured (GST , NST). In contrast, variation at three paternally inherited chloroplast DNA microsatellites was high. Chloroplast genetic differentiation was lower (GST = 0.402; RST = 0.547) than for mitochondrial DNA, but it was significantly related to taxonomy (amova; P < 0.001), and exhibited a significant phylogeographical structure (GST < RST). Different analyses of population structure indicated that A. flinckii was the most divergent taxon, while the remaining three species formed a relatively homogeneous group. However, a small number of the populations of these three taxa, all located at the limits of their respective ranges or in the Transverse Volcanic Belt, diverged from this main cluster. These trends suggest that the Mesoamerican Abies share a recent common ancestor and that their divergence and speciation is mainly driven by genetic drift and isolation during the warm interglacial periods. [source] | |||||||||||||