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Taxonomic Approach (taxonomic + approach)
Selected AbstractsMeasuring beta-diversity from taxonomic similarityJOURNAL OF VEGETATION SCIENCE, Issue 6 2007Giovanni Bacaro Abstract Question: The utility of beta (,-) diversity measures that incorporate information about the degree of taxonomic (dis)similarity between species plots is becoming increasingly recognized. In this framework, the question for this study is: can we define an ecologically meaningful index of ,-diversity that, besides indicating simple species turnover, is able to account for taxonomic similarity amongst species in plots? Methods: First, the properties of existing measures of taxonomic similarity measures are briefly reviewed. Next, a new measure of plot-to-plot taxonomic similarity is presented that is based on the maximal common subgraph of two taxonomic trees. The proposed measure is computed from species presences and absences and include information about the degree of higher-level taxonomic similarity between species plots. The performance of the proposed measure with respect to existing coefficients of taxonomic similarity and the coefficient of Jaccard is discussed using a small data set of heath plant communities. Finally, a method to quantify ,-diversity from taxonomic dissimilarities is discussed. Results: The proposed measure of taxonomic ,-diversity incorporates not only species richness, but also information about the degree of higher-order taxonomic structure between species plots. In this view, it comes closer to a modern notion of biological diversity than more traditional measures of ,-di-versity. From regression analysis between the new coefficient and existing measures of taxonomic similarity it is shown that there is an evident nonlinearity between the coefficients. This nonlinearity demonstrates that the new coefficient measures similarity in a conceptually different way from previous indices. Also, in good agreement with the findings of previous authors, the regression between the new index and the Jaccard coefficient of similarity shows that more than 80% of the variance of the former is explained by the community structure at the species level, while only the residual variance is explained by differences in the higher-order taxonomic structure of the species plots. This means that a genuine taxonomic approach to the quantification of plot-to-plot similarity is only needed if we are interested in the residual system's variation that is related to the higher-order taxonomic structure of a pair of species plots. [source] Phylogenetic analysis of Culicoides species from France based on nuclear ITS1 -rDNA sequencesMEDICAL AND VETERINARY ENTOMOLOGY, Issue 2 2006A. Perrin Abstract., Biting midges of the genus Culicoides (Diptera: Ceratopogonidae) play important roles in the transmission of viral diseases affecting wild and domestic ruminants and horses, including Bluetongue (BT) and African horse sickness (AHS) respectively. In southern Europe, BT has been largely transmitted by the classical Afro-Asian vector Culicoides imicola Kieffer. However, other species such as C. obsoletus Meigen, C. scoticus Downs & Kettle and C. pulicaris Linné may also be involved in BTV transmission. As a consequence of the discovery of C. imicola followed by BTV-2 outbreaks on the island of Corsica in October 2000, further studies on these biting midges have been carried out. To better characterize the evolution and phylogenetic relations of Culicoides, molecular analysis in parallel with a morphology-based taxonomic approach were performed. Phylogenetic analyses of French Culicoides species were undertaken using the ribosomal DNA (rDNA) internal transcribed spacer 1 (ITS1) as a molecular target. This region was shown to be useful in understanding evolutionary and genetic relationships between species. Construction of several trees showed that molecular phylogeny within the genus Culicoides correlates not only with morphological-based taxonomy but also with ecological patterns. [source] Bark beetles (Coleoptera: Curculionidae: Scolytinae) of importance to the Australian macadamia industry: an integrative taxonomic approach to species diagnosticsAUSTRALIAN JOURNAL OF ENTOMOLOGY, Issue 2 2010Andrew Mitchell Abstract Bark beetles are emerging as pests of macadamias, both in the native range of macadamias in Australia and worldwide wherever macadamias are cultivated. Multiple species have been detected on macadamias in Australia; however, little has been known about the identity of the species involved, other than that some belong to the genera Hypothenemus Westwood (1836) and Cryphalus Erichson (1836). Hypothenemus is a large and cosmopolitan genus, which contains two exotic species that are regulated pests for Australia: the tropical nut borer, Hypothenemus obscurus (Fabricius), is a pest of macadamias and Brazil nuts in the Americas and the Pacific, and the coffee berry borer, Hypothenemus hampei (Ferrari), is a pest of coffee found in coffee-growing areas worldwide, but not in Australia. It is essential that biosecurity authorities have reliable species diagnostic tools available in order to detect incursions of these species in Australia. However, the taxonomic literature on the relevant species is scattered and sparse, and the lack of molecular diagnostic methods means that identification of eggs and larvae has been impossible to date because the immature life stages are morphologically homogeneous. This study fills some crucial gaps in our ability to identify these species, developing diagnostic methods for the major pest species on macadamia in Australia, and for key exotic species, including both regulated pests. An integrative taxonomic approach was used incorporating both traditional morphological taxonomy and DNA barcode data in an iterative process to both identify beetles and develop robust diagnostics for them. DNA barcodes provide unambiguous discrimination of all species examined in this study, albeit a limited sample, and have the advantage that they can be used to identify all life stages of the species. [source] Plant functional type classifications in tropical dry forests in Costa Rica: leaf habit versus taxonomic approachesFUNCTIONAL ECOLOGY, Issue 4 2010Jennifer S. Powers Summary 1.,One way to simplify the high taxonomic diversity of plant species in vegetation models is to place species into groups based on shared, dominant traits. Many studies have suggested that morphological and physiological traits of tropical dry forest tree species vary with leaf habit (i.e. leaves from evergreen, deciduous or semi-deciduous species) and thus this characteristic may serve as a useful way to distinguish ecologically meaningful functional types. 2.,In this study we examine whether 10 plant traits vary with leaf habit in replicated leaves and individual trees of 87 species from a tropical dry forest in Costa Rica. We also looked for evidence of phylogenetic conservatism, i.e. closely related species sharing similar trait values compared to more distantly related taxa. 3.,While some of the traits varied within and among individual trees of the same species, interspecific variation accounted for 57,83% of the variance among samples. Four traits in addition to leaf habit showed evidence of phylogenetic conservatism, but these results were strongly dependent on the inclusion of the 18 species of legumes (Fabaceae) in our dataset. Contrary to our predictions, none of the traits we measured differed among leaf habits. However, five traits (wood density, leaf C, leaf N, N/P and C/N) varied significantly between legumes and other functional types. Furthermore, when all high-nitrogen non-legume taxa were compared to the high-nitrogen legumes, six traits excluding leaf N differed significantly, indicating that legumes are functionally different from other tree species beyond high N concentrations. Similarly, the 18 legume taxa (which all have compound leaves) also differed from other compound-leaved species for six traits, thus leaf type does not explain these patterns. 4.,Our main conclusions are that (i) a plant functional type classification based on leaf habit alone has little utility in the tropical dry forest we studied, and (ii) legumes have a different suite of traits including high leaf carbon and wood density in addition to high leaf nitrogen. Whether this result generalizes to other tropical forests is unknown, but merits future research due to the consequences of these traits for carbon storage and ecosystem processes. [source] Structure and diversity of the Mesozoic wood genus Xenoxylon in Far East Asia: implications for terrestrial palaeoclimatesLETHAIA, Issue 4 2009MARC PHILIPPE Although the faunal elements of Far East Asian Mesozoic terrestrial biota have attracted much attention in recent years, their palaeoecology remains poorly known. In particular, features of the palaeoclimate are highly controversial. To address this point we used the Mesozoic fossil wood Xenoxylon, a genus recognized as an indicator of wet temperate biotopes and which is common in the area during the Carnian,Maastrichtian interval. We re-appraised bibliographic data and gathered new data for Xenoxylon in the Mesozoic of Far East Asia. This demonstrated that previous taxonomic approaches to the genus have been so far idiosyncratic. We examined the anatomical diversity of morphogenus Xenoxylon in Far East Asia and compared it to that of samples from Europe. This indicates that in an area centred on north-eastern China, Xenoxylon reached a level of anatomical diversity unmatched elsewhere in the world. We hypothesize that this diversity witnesses the persistence of palaeoecological conditions particularly suitable for Xenoxylon and that a wet temperate climate prevailed over most of the area throughout the Carnian,Maastrichtian interval. It is in this setting that the famous Jehol Biota probably evolved. [source] Recent Advances and Future Prospects in Peptaibiotics, Hydrophobin, and Mycotoxin Research, and Their Importance for Chemotaxonomy of Trichoderma and HypocreaCHEMISTRY & BIODIVERSITY, Issue 5 2008Thomas Degenkolb Abstract Fungi of the genus Trichoderma with teleomorphs in Hypocrea are abundant producers of a group of amphiphilic, non-ribosomal peptide antibiotics, which are rich in the non-proteinogenic amino acid Aib (, -aminoisobutyric acid). They are referred to as peptaibiotics, or peptaibols, if a 1,2-amino alcohol is present at the C-terminus. Trichoderma/Hypocrea, like other ascomycetous fungi, also produce hydrophobins, a class of small, cysteine-rich proteins. Advanced soft ionization mass spectrometric techniques such as LC-CID-MS, LC-ESI-MSn, and IC-MALDI-TOF-MS enabled the high-throughput analysis, simultaneous detection and sequence determination of peptaibiotics and hydrophobins from minute quantities of fungal materials. Some Trichoderma species have been recognized to produce peptaibiotics as well as simple mycotoxins of the trichothecene group. The combination of sequence data of both groups of peptides with the pattern of low-molecular-weight secondary metabolites, including trichothecene-type mycotoxins, independently confirmed the results of morphological, molecular, and phylogenetic analyses. This approach established a new lineage in Trichoderma/Hypocrea, the Brevicompactum clade, comprising four new and one redescribed species. Notably, commercial preparations of single or mixed cultures of Trichoderma species, in particular T. harzianum, and T. koningii, are registered as biocontrol agents for soil and plant pathogens. In this context, it is emphasized that the four mycotoxin-producing species of the recently established Brevicompactum clade (T. brevicompactum, T. arundinaceum, T. turrialbense, and T. protrudens) are not closely related to any of the Trichoderma species currently used as biocontrol agents. Furthermore, possible health concerns about release of peptaibiotics in the biosphere are discussed with respect to their bioactivities and their use as drugs in human and veterinary medicine. Finally, future prospects regarding novel bioactivities and further research needs, including interdisciplinary taxonomic approaches, are outlined. [source] | |||||||||||||