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Taxonomic Affinity (taxonomic + affinity)
Selected Abstracts3 Phylogenetic affinity of the palmelloid green algae, verdigellas and palmophyllum (chlorophyta), based on analyses of nuclear-encoded small subunit rDNA sequencesJOURNAL OF PHYCOLOGY, Issue 2003M. P. Ashworth Palmophyllum, Verdigellas and Palmoclathrus are marine palmelloid green algae with morphologies ranging from closely adherent crusts, peltate discs, to upright branched thalli. Thalli of these taxa are comprised of small spherical cells embedded within a dense mucilaginous matrix. Taxonomic affinities of these palmelloid genera, however, has remained uncertain. Previous studies of Palmophyllum and Verdigellas classified these algae within the Palmellaceae, but the complete absence of data regarding reproduction have blurred ordinal designations. Generally, these algae have been classified as members of the Tetrasporales within the class Chlorophyceae, but the Chlorococcales has also been proposed. Global analyses of eukaryotic nuclear-encoded small subunit rDNA sequences based on parsimony (MP), neighbor joining (NJ) and likelihood (ML) methods confirm the placement of Palmophyllum and Verdigellas as a monophyletic group within the Chlorophyta, but class and ordinal affinities were not clearly resolved. ML suggested that Verdigellas and Palmophyllum are members of a clade with coccoid prasinophyte algae at the base of the Chlorophyta, while NJ and ML suggested that the palmelloid genera formed a basal lineage of the Viridiplantae. A consistent feature of all analyses, however, is that Verdigellas and Palmophyllum did not group with the chlorophycean orders, Tetrasporales or Chlorococcales. Results will be discussed in the context of taxonomy, character evolution, and implications for green plant evolution. (Supported in part by NSF grants DEB-0128952 to MWF, DEB-0129030 to MAB, and DEB-0128977 to FWZ) [source] Taxonomic affinities and evolutionary history of the early Pleistocene hominids of Java: Dentognathic evidenceAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 4 2005Yousuke Kaifu Abstract Temporal changes, within-group variation, and phylogenetic positions of the Early Pleistocene Javanese hominids remain unclear. Recent debate focused on the age of the oldest Javanese hominids, but the argument so far includes little morphological basis for the fossils. To approach these questions, we analyzed a comprehensive dentognathic sample from Sangiran, which includes most of the existing hominid mandibles and teeth from the Early Pleistocene of Java. The sample was divided into chronologically younger and older groups. We examined morphological differences between these chronological groups, and investigated their affinities with other hominid groups from Africa and Eurasia. The results indicated that 1) there are remarkable morphological differences between the chronologically younger and older groups of Java, 2) the chronologically younger group is morphologically advanced, showing a similar degree of dentognathic reduction to that of Middle Pleistocene Chinese H. erectus, and 3) the chronologically older group exhibits some features that are equally primitive as or more primitive than early H. erectus of Africa. These findings suggest that the evolutionary history of early Javanese H. erectus was more dynamic than previously thought. Coupled with recent discoveries of the earliest form of H. erectus from Dmanisi, Georgia, the primitive aspects of the oldest Javanese hominid remains suggest that hominid groups prior to the grade of ca. 1.8,1.5 Ma African early H. erectus dispersed into eastern Eurasia during the earlier Early Pleistocene, although the age of the Javanese hominids themselves is yet to be resolved. Subsequent periods of the Early Pleistocene witnessed remarkable changes in the Javanese hominid record, which are ascribed either to significant in situ evolution or replacement of populations. Am J Phys Anthropol, 2005. © 2005 Wiley-Liss, Inc. [source] PHYLOGENETIC ANALYSIS OF PSEUDOCHLORODESMIS STRAINS REVEALS CRYPTIC DIVERSITY ABOVE THE FAMILY LEVEL IN THE SIPHONOUS GREEN ALGAE (BRYOPSIDALES, CHLOROPHYTA),JOURNAL OF PHYCOLOGY, Issue 3 2009Heroen Verbruggen The genus Pseudochlorodesmis (Bryopsidales) is composed of diminutive siphons of extreme morphological simplicity. The discovery of Pseudochlorodesmis -like juveniles in more complex Bryopsidales (e.g., the Halimeda microthallus stage) jeopardized the recognition of this genus. Confronted with this uncertainty, taxonomists transferred many simple siphons into a new genus, Siphonogramen. In this study, we used a multimarker approach to clarify the phylogenetic and taxonomic affinities of the Pseudochlorodesmis-Siphonogramen (PS) complex within the more morphologically complex bryopsidalean taxa. Our analyses reveal a new layer of diversity largely distinct from the lineages containing the structurally complex genera. The PS complex shows profound cryptic diversity exceeding the family level. We discuss a potential link between thallus complexity and the prevalence and profundity of cryptic diversity. For taxonomic simplicity and as a first step toward clarifying the taxonomy of these simple siphons, we propose to maintain Pseudochlorodesmis as a form genus and subsume Siphonogramen and Botryodesmis therein. [source] Psychotria monensis sp. nov (Rubiaceae), a tree species from CameroonNORDIC JOURNAL OF BOTANY, Issue 2 2010Olivier Séné Psychotria monensis Cheek & Séné (Rubiaceae) from lowland evergreen forest in western Cameroon is described and illustrated. Its conservation status is assessed as ,Critically Endangered' according to the IUCN criteria, and its taxonomic affinities are discussed. [source] Temporal dynamics and growth of Actinophrys sol (Sarcodina: Heliozoa), the top predator in an extremely acidic lakeFRESHWATER BIOLOGY, Issue 6 2006ELANOR M. BELL Summary 1. The in situ abundance, biomass and mean cell volume of Actinophrys sol (Sarcodina: Heliozoa), the top predator in an extremely acidic German mining lake (Lake 111; pH 2.65), were determined over three consecutive years (spring to autumn, 2001,03). 2. Actinophrys sol exhibited pronounced temporal and vertical patterns in abundance, biomass and mean cell volume. Increasing from very low spring densities, maxima in abundance and biomass were observed in late June/early July and September. The highest mean abundance recorded during the study was 7 × 103 Heliozoa L,1. Heliozoan abundance and biomass were higher in the epilimnion than in the hypolimnion. Actinophrys sol cells from this acidic lake were smaller than individuals of the same species found in other aquatic systems. 3. We determined the growth rate of A. sol using all potential prey items available in, and isolated and cultured from, Lake 111. Prey items included: single-celled and filamentous bacteria of unknown taxonomic affinity, the mixotrophic flagellates Chlamydomonas acidophila and Ochromonas sp., the ciliate Oxytricha sp. and the rotifers Elosa worallii and Cephalodella hoodi. Actinophrys sol fed over a wide-size spectrum from bacteria to metazoans. Positive growth was not supported by all naturally available prey. Actinophrys sol neither increased in cell number (k) nor biomass (kb) when starved, with low concentrations of single-celled bacteria or with the alga Ochromonas sp. Positive growth was achieved with single-celled bacteria (k = 0.22 ± 0.02 d,1; kb = ,0.06 ± 0.02 d,1) and filamentous bacteria (k = 0.52 ± <0.01 d,1; kb = 0.66 d,1) at concentrations greater than observed in situ, and the alga C. acidophila (up to k = 0.43 ± 0.03 d,1; kb = 0.44 ± 0.04 d,1), the ciliate Oxytricha sp. (k = 0.34 ± 0.01 d,1) and in mixed cultures containing rotifers and C. acidophila (k = 0.23 ± 0.02,0.32 ± 0.02 d,1; maximum kb = 0.42 ± 0.05 d,1). The individual- and biomass-based growth of A. sol was highest when filamentous bacteria were provided. 4. Existing quantitative carbon flux models for the Lake 111 food web can be updated in light of our results. Actinophrys sol are omnivorous predators supported by a mixed diet of filamentous bacteria and C. acidophila in the epilimnion. Heliozoa are important components in the planktonic food webs of ,extreme' environments. [source] Comparing the accuracy and precision of three techniques used for estimating missing landmarks when reconstructing fossil hominin craniaAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 1 2009Rudolph Neeser Abstract Various methodological approaches have been used for reconstructing fossil hominin remains in order to increase sample sizes and to better understand morphological variation. Among these, morphometric quantitative techniques for reconstruction are increasingly common. Here we compare the accuracy of three approaches,mean substitution, thin plate splines, and multiple linear regression,for estimating missing landmarks of damaged fossil specimens. Comparisons are made varying the number of missing landmarks, sample sizes, and the reference species of the population used to perform the estimation. The testing is performed on landmark data from individuals of Homo sapiens, Pan troglodytes and Gorilla gorilla, and nine hominin fossil specimens. Results suggest that when a small, same-species fossil reference sample is available to guide reconstructions, thin plate spline approaches perform best. However, if no such sample is available (or if the species of the damaged individual is uncertain), estimates of missing morphology based on a single individual (or even a small sample) of close taxonomic affinity are less accurate than those based on a large sample of individuals drawn from more distantly related extant populations using a technique (such as a regression method) able to leverage the information (e.g., variation/covariation patterning) contained in this large sample. Thin plate splines also show an unexpectedly large amount of error in estimating landmarks, especially over large areas. Recommendations are made for estimating missing landmarks under various scenarios. Am J Phys Anthropol 2009. © 2009 Wiley-Liss, Inc. [source] Mitochondrial Cytochrome b mRNA Editing in Dinoflagellates: Possible Ecological and Evolutionary Associations?THE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 6 2005HUAN ZHANG Abstract. To verify the hypothesis that mt mRNA editing is widespread in dinoflagellates, we analyzed cytochrome b (cob) mRNA editing for six species representing distinct ecotypes and taxonomic classes of Dinophyceae. Editing is detected in all, which is similar to the three other species studied previously in that edited sites appear to aggregate in four clusters and occur predominantly at first and second positions of codons (93%), overwhelmingly involving A,G, U,C, or C,U substitutions with a smaller number of G,C, G,A changes. Comparative analyses on editing characteristics reveal interesting trends related to phylogenetic relatedness and ecological features. Editing density (percentage of nucleotide that is affected by editing) increases from early to derived lineages. Higher editing densities also map to red tide-forming lineages. Furthermore, similarity of location of edited codons (LOE) and the type of nucleotide changes (TOE) in different lineages mirror the taxonomic affinity of the lineages. Phylogenetic trees constructed from LOE and TOE resemble those inferred from cob sequences. The results bolster our earlier hypothesis that cob editing is widespread in dinoflagellates and suggest that density, location, and type of editing may bear yet-to-be-defined evolutionary and ecological significance. [source] | ||||||||||