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Taxonomic
Terms modified by Taxonomic Selected AbstractsTHE TAXONOMIC AND PHYLOGENETIC POSITION OF THE PLESIOSAUROIDEA FROM THE LOWER JURASSIC POSIDONIA SHALE OF SOUTH-WEST GERMANYPALAEONTOLOGY, Issue 3 2007FRANZISKA GROßMANNArticle first published online: 17 MAY 200 Abstract:, The two plesiosauroid species from the Posidonia shale of Holzmaden, ,Plesiosaurus'guilelmiimperatoris and ,Plesiosaurus'brachypterygius, do not belong to Plesiosaurus but form new monotypic genera. The new genus Hydrorion is erected for ,P.'brachypterygius, and the genus Seeleyosaurus is re-established for ,P.'guilelmiimperatoris. The recently described species Plesiopterys wildii is regarded as a junior synonym of S. guilelmiimperatoris. A short phylogenetic analysis shows that S. guilelmiimperatoris and Muraenosaurus are basal elasmosaurs. H. brachypterygius, Occitanosaurus tournemirensis from France and Microcleidus homalospondylus from England form a monophyletic clade, which is the sister taxon to the Cretaceous elasmosaurs. A palaeobiogeographical comparison of plesiosaur localities in the Lower Jurassic shows distinct palaeobiogeographical zones for the Toarcian, with different plesiosaur taxa in England, Germany and France. [source] New visions of dental tissue research: Tooth development, chemistry, and structureEVOLUTIONARY ANTHROPOLOGY, Issue 5 2008Tanya M. Smith Abstract Teeth are one of the best preserved and most commonly recovered elements in primate fossil assemblages. Taxonomic, functional, and phylogenetic hypotheses often rely on dental characters, despite considerable evidence of homoplasy in tooth form and large variation in tooth size within and among primates.1,2 Recent studies have led to new areas of research centered on incremental tooth development, chemical composition, and internal structure. Due to rapid technological developments in imaging and elemental sampling, these new approaches have the potential to increase our understanding of developmental biology, including not only changes in the pace of growth and reproduction, but also our assessments of diets, migration patterns, environments, and taxonomy. The integration of these temporal, chemical, and structural approaches heralds a bright future for the role of dental tissue research in evolutionary anthropology. © 2008 Wiley-Liss, Inc. [source] Taxonomic and regional patterns in benthic macroinvertebrate elemental composition in streamsFRESHWATER BIOLOGY, Issue 11 2005MICHELLE A. EVANS-WHITE Summary 1. Ecological stoichiometry has been used to better understand dynamics in consumer growth and the role of consumer-recycled nutrients because it focuses on more than one element. Most research has focused on pelagic rather than benthic consumers. Variation in elemental composition among benthic consumer taxa would suggest that taxa differ in their susceptibility to nutrient limitation or in their role in recycling nutrients. 2. We collected benthic macroinvertebrates from streams in two regions (Indiana,Michigan and Wisconsin, U.S.A.) to examine taxonomic and regional variation in benthic macroinvertebrate body carbon (C), nitrogen (N), and phosphorus (P) concentrations and ratios. 3. Elemental composition varied little within taxa common to both regions. In contrast, elemental composition differed greatly among taxa and appeared to be related to phylogeny. The elemental composition of macroinvertebrates clustered into three distinct groups: insects, mollusks, and crustaceans. To a lesser extent, insects and mollusks also differed in elemental composition among genera. 4. Functional feeding groups (FFGs) differed in elemental composition, with predators having a higher N content than other groups. Substantial elemental imbalances between C and N were found between most primary consumers and their likely food sources, and the magnitude of the imbalance depended in part on the FFG. 5. Our results support an assumption of most ecological stoichiometry models that, within a species, the elemental composition of aquatic invertebrates is relatively constant. Variation in elemental composition among taxa at various higher taxonomic levels suggests that susceptibility of stream invertebrates to nutrient limitation and their role in nutrient cycling will strongly depend on phylogeny. [source] Assessing the reliability of biodiversity databases: identifying evenly inventoried island parasitoid faunas (Hymenoptera: Ichneumonoidea) worldwideINSECT CONSERVATION AND DIVERSITY, Issue 2 2010ANA M. C. SANTOS Abstract., 1.,Taxonomic and geographic biases are common in biodiversity inventories, especially in hyperdiverse taxa, such as the Ichneumonoidea. Despite these problems, biodiversity databases could be a valuable source of information if their reliability is carefully assessed. 2.,One major problem of using these data for large-scale analyses is the unevenness of data quality from different areas, which makes them difficult to compare. One way of surpassing such problem would be to identify sets of areas that are evenly inventoried. 3.,Here, we propose a scoring protocol for the identification of sets of evenly inventoried areas from taxonomic databases, based on three criteria: (i) completeness at high taxonomic levels, (ii) congruence with well-established ecological relationships (such as species,area relationship), and (iii) publication effort received. We apply this protocol to the selection of a set of evenly inventoried islands worldwide for two Ichneumonoidea families (Braconidae and Ichneumonidae) from the data gathered in Taxapad database. 4.,From the 118 islands included in Taxapad, 53 and 70 can be considered sufficiently inventoried for Braconidae and Ichneumonidae, respectively. The publication effort criterion was more restrictive than the other two criteria. The Indomalayan, Nearctic and Palearctic regions had more than half of their islands identified as evenly inventoried, for both families. 5.,We discuss the generality of the biases and incompleteness of most biodiversity data, and also how the basic principles of the protocol proposed here can be applied to taxonomic databases devoted to other taxa. Also, the islands identified here can serve as the basis for large-scale analyses of the poorly known biogeography of the Ichneumonoidea. [source] Taxonomic and biogeographical status of guanaco Lama guanicoe (Artiodactyla, Camelidae)MAMMAL REVIEW, Issue 2 2006BENITO A. GONZÁLEZ ABSTRACT 1We review the status of the four currently recognized guanaco Lama guanicoe subspecies, and provide information about their taxonomy and distribution. The success of guanaco in inhabiting open habitats of South America is based mainly on the flexibility of their social behaviour and ecophysiological adaptations to harsh environments. 2Lönnberg described the first subspecies, L. g. cacsilensis, at the beginning of the 20th century. Forty years later Krumbiegel described L. g. voglii, based on skull measurements and pelage colouration. The other two subspecies, L. g. huanacus and L. g. guanicoe, were classified as subspecies by Krumbiegel based on pelage colouration and body size, while maintaining the original Latin names and descriptors. 3Further guanaco populations have been incorporated into each of these subspecies, based on their proximity to the type locality but without attention to the homogeneity of phenotype or habitat and only limited consideration of Bergmann's rule based on scarce skulls. Two alternative geographical ranges were proposed in the middle and towards the end of the 20th century. Discrepancies occur in the geographical range of each subspecies. 4Molecular studies based on mitochondrial DNA cytochrome b sequences recognized only two subspecies: the Peruvian L. guanicoe cacsilensis and the rest of the populations grouped in the clade recognized as L. g. guanicoe. We conclude that the evolutionary biology of L. guanicoe requires a significant revision with respect to biogeography. Phylogeographical data hold particular value in developing conservation strategies, particularly for some of the reduced and marginal populations and/or subspecies and will support IUCN (The World Conservation Union) Red List classification. [source] Taxonomic and functional diversity in arbuscular mycorrhizal fungi , is there any relationship?NEW PHYTOLOGIST, Issue 2 2004Marcel G. A. Van Der Heijden First page of article [source] First partial face and upper dentition of the Middle Miocene hominoid Dryopithecus fontani from Abocador de Can Mata (Vallès-Penedès Basin, Catalonia, NE Spain): Taxonomic and phylogenetic implicationsAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 2 2009Salvador Moyà-Solà Abstract A well-preserved 11.8-million-years-old lower face attributed to the seminal taxon Dryopithecus fontani (Primates, Hominidae) from the Catalan site ACM/C3-Ae of the Hostalets de Pierola area (Vallès-Penedès Basin, Catalonia, NE Spain) is described. The new data indicate that D. fontani is distinct at the genus level from Late Miocene European taxa previously attributed to Dryopithecus, which are here reassigned to Hispanopithecus. The new facial specimen also suggests that D. fontani and the Middle Miocene Pierolapithecus catalaunicus are not synonymous. Anatomical and morphometric analyses further indicate that the new specimen shows a combination of lower facial features,hitherto unknown in Miocene hominoids,that resembles the facial pattern of Gorilla, thus providing the first nondental evidence of gorilla-like lower facial morphology in the fossil record. Considering the current evidence, the gorilla-like facial pattern of D. fontani is inferred to be derived relative to previously known stem hominids, and might indicate that this taxon is either an early member of the Homininae or, alternatively, a stem hominid convergent with the lower facial pattern of Gorilla. The biogeographic implications of both alternatives are discussed. This new finding in the Hostalets de Pierola section reinforces the importance of this area for understanding the elusive question of the Middle Miocene origin and early radiation of great apes. Am J Phys Anthropol, 2009. © 2009 Wiley-Liss, Inc. [source] Phylogeny and phylogeography of squirrel monkeys (genus Saimiri) based on cytochrome b genetic analysisAMERICAN JOURNAL OF PRIMATOLOGY, Issue 3 2010Anne Lavergne Abstract Squirrel monkeys (genus Saimiri) are distributed over a wide area encompassing the Amazon Basin: French Guiana, Suriname, and Guyana, together with Western Panama and Western Costa Rica. The genus Saimiri includes a complex of species and subspecies displaying considerable morphological variation. Taxonomic and systematic studies have identified, in this genus, one to seven species comprising up to 16 subspecies. The phylogenetic relationships between these taxa are poorly understood. Molecular markers have yielded a consistent framework for the systematics of Central and South American Saimiri, identifying four distinct clades: S. oerstedii, S. sciureus, S. boliviensis, and S. ustus. Here, we reconsider the phylogenetic and biogeographic history of Saimiri on the basis of mitochondrial (mtDNA) sequence data, focusing mostly on individuals originating from the Amazon Basin. We studied 32 monkeys with well-defined geographic origins and inferred the phylogenetic relationships between them on the basis of full-length cytochrome b gene nucleotide sequences. The high level of gene diversity observed (0.966) is consistent with the high level of behavioral and morphological variation observed across the geographic range of the genus: 20 mtDNA haplotypes were identified with a maximum divergence of 4.81% between S. b. boliviensis and S. ustus. In addition to confirming the existence of the four clades previously identified on the basis of molecular characters, we suggest several new lineages, including S. s. macrodon, S. s. albigena, S. s. cassiquiarensis, and S. s. collinsi. We also propose new patterns of dispersion and diversification for the genus Saimiri, and discuss the contribution of certain rivers and forest refuges to its structuring. Am. J. Primatol. 72:242,253, 2010. © 2009 Wiley-Liss, Inc. [source] Seedcoat micromorphology of Impatiens (Balsaminaceae) from ChinaBOTANICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 2 2005YI SONG Seeds of 38 species of Impatiens mostly from south-western China were observed by scanning electron microscopy. High diversity was found in seedcoat micromorphology. Based on the structure and ornamentation of epidermal cells of the seedcoat, particularly the pattern of the arrangement of the cells and the degree of elevation of the anticlinal cell walls, four morphological types can be distinguished, viz, laevigate, granulate, reticulate and protrusive. The laevigate type and granulate type are unique, each occurring in only one species. The other two types are common and can be further divided into subdivisions according to the shape of the epidermal ornamentation of the seedcoat. Descriptions of seed size, shape and seedcoat types are summarized for the genus. Taxonomic and phylogenetic implications of the seedcoat micromorphology are also discussed, in comparison with the available gross morphological and molecular data. © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society, 2005, 149, 195,208. [source] Impacts of Dreissena invasions on benthic macroinvertebrate communities: a meta-analysisDIVERSITY AND DISTRIBUTIONS, Issue 2 2007Jessica M. Ward ABSTRACT Dreissenid mussels (the zebra mussel Dreissena polymorpha and the quagga mussel Dreissena bugensis) have invaded lakes and rivers throughout North America and Europe, where they have been linked to dramatic changes in benthic invertebrate community diversity and abundance. Through a meta-analysis of published data from 47 sites, we developed statistical models of Dreissena impact on benthic macroinvertebrates across a broad range of habitats and environmental conditions. The introduction of Dreissena was generally associated with increased benthic macroinvertebrate density and taxonomic richness, and with decreased community evenness (of taxa excluding Dreissena). However, the strength of these effects varied with sediment particle size across sites. The effects of Dreissena differed among taxonomic and functional groups of macroinvertebrates, with positive effects on the densities of scrapers and predators, particularly leeches (Hirudinea), flatworms (Turbellaria), and mayflies (Ephemeroptera). Gastropod densities increased in the presence of Dreissena, but large-bodied snail taxa tended to decline. Dreissena was associated with declines in the densities sphaeriid clams and other large filter-feeding taxa, as well as burrowing amphipods (Diporeia spp.), but had strong positive effects on gammarid amphipods. These patterns are robust to variation in the methodology of primary studies. The effects of Dreissena are remarkably concordant with those of ecologically similar species, suggesting universality in the interactions between introduced byssally attached mussels and other macroinvertebrates. [source] Conservation Biogeography: assessment and prospectDIVERSITY AND DISTRIBUTIONS, Issue 1 2005Robert J. Whittaker ABSTRACT There is general agreement among scientists that biodiversity is under assault on a global basis and that species are being lost at a greatly enhanced rate. This article examines the role played by biogeographical science in the emergence of conservation guidance and makes the case for the recognition of Conservation Biogeography as a key subfield of conservation biology delimited as: the application of biogeographical principles, theories, and analyses, being those concerned with the distributional dynamics of taxa individually and collectively, to problems concerning the conservation of biodiversity. Conservation biogeography thus encompasses both a substantial body of theory and analysis, and some of the most prominent planning frameworks used in conservation. Considerable advances in conservation guidelines have been made over the last few decades by applying biogeographical methods and principles. Herein we provide a critical review focussed on the sensitivity to assumptions inherent in the applications we examine. In particular, we focus on four inter-related factors: (i) scale dependency (both spatial and temporal); (ii) inadequacies in taxonomic and distributional data (the so-called Linnean and Wallacean shortfalls); (iii) effects of model structure and parameterisation; and (iv) inadequacies of theory. These generic problems are illustrated by reference to studies ranging from the application of historical biogeography, through island biogeography, and complementarity analyses to bioclimatic envelope modelling. There is a great deal of uncertainty inherent in predictive analyses in conservation biogeography and this area in particular presents considerable challenges. Protected area planning frameworks and their resulting map outputs are amongst the most powerful and influential applications within conservation biogeography, and at the global scale are characterised by the production, by a small number of prominent NGOs, of bespoke schemes, which serve both to mobilise funds and channel efforts in a highly targeted fashion. We provide a simple typology of protected area planning frameworks, with particular reference to the global scale, and provide a brief critique of some of their strengths and weaknesses. Finally, we discuss the importance, especially at regional scales, of developing more responsive analyses and models that integrate pattern (the compositionalist approach) and processes (the functionalist approach) such as range collapse and climate change, again noting the sensitivity of outcomes to starting assumptions. We make the case for the greater engagement of the biogeographical community in a programme of evaluation and refinement of all such schemes to test their robustness and their sensitivity to alternative conservation priorities and goals. [source] Biodiverse, a tool for the spatial analysis of biological and related diversityECOGRAPHY, Issue 4 2010Shawn W. Laffan Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrix (e.g. genetic dissimilarity) relationships. The explosion in georeferenced biological specimen and survey data means there is an increasing need for such tools. Biodiverse supports four processes: 1) linked visualisation of data distributions in geographic, taxonomic, phylogenetic and matrix spaces; 2) spatial moving window analyses including richness, endemism, phylogenetic diversity and beta diversity; 3) spatially constrained agglomerative cluster analyses; and 4) randomisations for hypothesis testing. Biodiverse is open-source and supports user developed extensions. It can be used both through a graphical user interface and scripts. Biodiverse can be downloaded from Gut content analysis and a new feeding group classification of termitesECOLOGICAL ENTOMOLOGY, Issue 4 2001S. E. Donovan Summary 1. Gut content analysis of termites was undertaken using microscopical techniques. The 46 study species covered the entire range of taxonomic and feeding forms within the Order. 2. Inter-specific gut contents data were analysed using principal components analysis, placing species along a clear humification gradient based on variations in the amount of silica and plant tissue fragments in the gut. 3. Redundancy analysis was used to find morphological correlates of the observed variation in gut contents. A total of 22 morphological characters (out of 45 candidate characters) were correlated significantly with the gut contents. 4. Three of the 22 significantly correlated characters unambiguously defined feeding groups, which were designated groups I to IV in increasing order of humification of the feeding substrate. Group I contains lower termite dead wood and grass-feeders; group II contains Termitidae with a range of feeding habits including dead wood, grass, leaf litter, and micro-epiphytes; group III contains Termitidae feeding in the organic rich upper layers of the soil; group IV contains the true soil-feeders (again all Termitidae), ingesting apparently mineral soil. These groupings were generally supported statistically in a canonical covariance analysis, although group II apparently represents termite species with a rather wide range of feeding habits. 5. Using existing hypotheses of termite phylogenetic relationships, it seems probable that group I feeders are phylogenetically basal, and that the other groupings have arisen independently on a number of occasions. Soil-feeding (i.e. group III and group IV feeding) may have evolved due to the co-option of faecal material as a fungal substrate by Macrotermitinae-like ancestral forms. As a consequence, these forms would have been constrained to build nest structures from soil and would therefore have passed at least some soil through their guts. [source] Disentangling biodiversity effects on ecosystem functioning: deriving solutions to a seemingly insurmountable problemECOLOGY LETTERS, Issue 6 2003Shahid Naeem Abstract Experimental investigations of the relationship between biodiversity and ecosystem functioning (BEF) directly manipulate diversity then monitor ecosystem response to the manipulation. While these studies have generally confirmed the importance of biodiversity to the functioning of ecosystems, their broader significance has been difficult to interpret. The main reasons for this difficulty concern the small scales of the experiment, a bias towards plants and grasslands, and most importantly a general lack of clarity in terms of what attributes of functional diversity (FD) were actually manipulated. We review how functional traits, functional groups, and the relationship between functional and taxonomic diversity have been used in current BEF research. Several points emerged from our review. First, it is critical to distinguish between response and effect functional traits when quantifying or manipulating FD. Second, although it is widely done, using trophic position as a functional group designator does not fit the effect-response trait division needed in BEF research. Third, determining a general relationship between taxonomic and FD is neither necessary nor desirable in BEF research. Fourth, fundamental principles in community and biogeographical ecology that have been largely ignored in BEF research could serve to dramatically improve the scope and predictive capabilities of BEF research. We suggest that distinguishing between functional response traits and functional effect traits both in combinatorial manipulations of biodiversity and in descriptive studies of BEF could markedly improve the power of such studies. We construct a possible framework for predictive, broad-scale BEF research that requires integrating functional, community, biogeographical, and ecosystem ecology with taxonomy. [source] Conservation and management of the Arctic charr: a forward viewECOLOGY OF FRESHWATER FISH, Issue 1 2007C. E. Adams Abstract , In this study, we synthesised the views of 34 participants in a workshop to consider the status and future conservation and management of the Arctic charr (Salvelinus alpinus L.). These are expressed as a series of resolutions deriving from a conference on Arctic charr conservation held in Perth, Scotland in June 2004. Agreed resolutions from the conference were as follows. (i) The unique diversity of Arctic charr should be recognised for the contribution it makes to biodiversity of northern aquatic communities. (ii) The recognition by the public, nongovernmental organisations and national governments of the importance of Arctic charr in northern ecosystems is an important step to the management and protection that should be pursued. (iii) The taxonomic status of highly variable charr populations requires to be reviewed. (iv) There should be a separate system, complementary to the taxonomic one, which systematically catalogues the biological diversity of S. alpinus. (v) The Arctic charr provides a unique natural resource to study the process of evolution and this requires the highest level of protection from anthropogenic effects. (vi) The status of conservation policy for Arctic charr needs to be urgently reviewed to take account of its unique position in the fauna. [source] Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget , France)ENVIRONMENTAL MICROBIOLOGY, Issue 9 2009Didier Debroas Summary The main goals of this work were to identify the metabolic pathways of the bacterial community in a lacustrine ecosystem and to establish links between taxonomic composition and the relative abundances of these metabolic pathways. For this purpose, we analysed a 16S rRNA gene library obtained by gene amplification together with a sequence library of both insert ends on c. 7700 fosmids. Whatever the library used, Actinobacteria was the most abundant bacterial group, followed by Proteobacteria and Bacteroidetes. Specific aquatic clades such as acI and acIV (Actinobacteria) or LD12 and GOBB-C201 (Alphaproteobacteria) were found in both libraries. From comparative analysis of metagenomic libraries, the metagenome of this lake was characterized by overrepresentation of genes involved in the degradation of xenobiotics mainly associated with Alphaproteobacteria. Actinobacteria were mainly related to metabolic pathways involved in nucleotide metabolism, cofactors, vitamins, energy, replication and repair. Betaproteobacteria appeared to be characterized by the presence of numerous genes implicated in environmental information processing (membrane transport and signal transduction) whereas glycan and carbohydrate metabolism pathways were overrepresented in Bacteroidetes. These results prompted us to propose hypotheses on the ecological role of these bacterial classes in lacustrine ecosystems. [source] Transcriptional activity of paddy soil bacterial communitiesENVIRONMENTAL MICROBIOLOGY, Issue 4 2009Pravin Malla Shrestha Summary Bulk mRNA was used to explore the transcriptional activity of bacterial communities in oxic versus anoxic paddy soil. Two microbial cDNA libraries were constructed from composite samples using semi-randomly primed RT-PCR. cDNAs averaged 500,600 bp in length and were treated as expressed sequence tags (ESTs). Clustering analysis of 805 random cDNAs resulted in 179 and 155 different ESTs for the oxic and anoxic zones respectively. Using an E -value threshold of e,10, a total of 218 different ESTs could be assigned by blastx, while 116 ESTs were predicted novel. Both the proportion and significance of the EST assignments increased with cDNA length. Taxonomic assignment was more powerful in discriminating between the aerobic and anaerobic bacterial communities than functional inference, as most ESTs in both oxygen zones were putative indicators of similar housekeeping functions, in particular ABC-type transporters. A few ESTs were putative indicators for community function in a biogeochemical context, such as ,-oxidation of long-chain fatty acids specifically in the oxic zone. Expressed sequence tags assigned to Alpha- and Betaproteobacteria were predominantly found in the oxic zone, while those affiliated with Deltaproteobacteria were more frequently detected in the anoxic zone. At the genus level, multiple assignments to Bradyrhizobium and Geobacter were unique to the oxic and anoxic zones respectively. The phylum-level affiliations of 93 16S rRNA sequences corresponded well with two taxonomically distinct EST patterns. Expressed sequence tags affiliated with Acidobacteria and Chloroflexi were frequently detected in both oxygen zones. In summary, the soil metatranscriptome is accessible for global analysis and such studies have great potential in elucidating the taxonomic and functional status of soil bacterial communities, but study significance depends on the number and length of cDNAs being randomly analysed. [source] RESISTANCE OF SPIDERS TO CRETACEOUS-TERTIARY EXTINCTION EVENTSEVOLUTION, Issue 11 2003David Penney Abstract Throughout Earth history a small number of global catastrophic events leading to biotic crises have caused mass extinctions. Here, using a technique that combines taxonomic and numerical data, we consider the effects of the Cenomanian,Turonian and Cretaceous,Tertiary mass extinctions on the terrestrial spider fauna in the light of new fossil data. We provide the first evidence that spiders suffered no decline at the family level during these mass extinction events. On the contrary, we show that they increased in relative numbers through the Cretaceous and beyond the Cretaceous,Tertiary extinction event. [source] How well can the fatty acid content of lake seston be predicted from its taxonomic composition?FRESHWATER BIOLOGY, Issue 9 2010A. BEC Abstract 1. Results from the few field studies that have tried to relate seston taxonomic and fatty acid (FA) composition suggest that phytoplankton composition only partially explains seston FA composition. However, in these studies, the heterotrophic components of seston (i.e. bacteria and heterotrophic protists) have not been accounted for. 2. The general premise of this article was that including the contribution of heterotrophs to seston biomass can improve understanding of the variability in seston FA composition. This was tested for an oligotrophic clearwater lake, in which the taxonomic and FA compositions of seston, fractionated into three size classes, were monitored every 2 weeks over a growth season. The relationship between seston taxonomic and FA composition was studied using canonical correlation analyses. 3. Because of their relative richness in branched FA and lack of highly unsaturated FAs (HUFA) compared to autotrophs and other protists, the contribution of bacteria to seston biomass was shown to explain an important part of the differences in FA composition between the different seston size classes. Phytoplankton seasonal succession also affected the FA composition of seston but only for size classes that were dominated by autotrophs. 4. The results also indicated that heterotrophic protists such as ciliates and heterotrophic nanoflagellates might substantially influence the seston FA, and especially, HUFA, composition. 5. The per cent of variability in seston FA composition that was explained by its taxonomic composition was still relatively low, even when taking account of heterotrophs. Hence, other possible influences, such as phytoplankton species composition, physiological state and the contribution of terrestrial detritus, need investigation. [source] Taxonomic and regional patterns in benthic macroinvertebrate elemental composition in streamsFRESHWATER BIOLOGY, Issue 11 2005MICHELLE A. EVANS-WHITE Summary 1. Ecological stoichiometry has been used to better understand dynamics in consumer growth and the role of consumer-recycled nutrients because it focuses on more than one element. Most research has focused on pelagic rather than benthic consumers. Variation in elemental composition among benthic consumer taxa would suggest that taxa differ in their susceptibility to nutrient limitation or in their role in recycling nutrients. 2. We collected benthic macroinvertebrates from streams in two regions (Indiana,Michigan and Wisconsin, U.S.A.) to examine taxonomic and regional variation in benthic macroinvertebrate body carbon (C), nitrogen (N), and phosphorus (P) concentrations and ratios. 3. Elemental composition varied little within taxa common to both regions. In contrast, elemental composition differed greatly among taxa and appeared to be related to phylogeny. The elemental composition of macroinvertebrates clustered into three distinct groups: insects, mollusks, and crustaceans. To a lesser extent, insects and mollusks also differed in elemental composition among genera. 4. Functional feeding groups (FFGs) differed in elemental composition, with predators having a higher N content than other groups. Substantial elemental imbalances between C and N were found between most primary consumers and their likely food sources, and the magnitude of the imbalance depended in part on the FFG. 5. Our results support an assumption of most ecological stoichiometry models that, within a species, the elemental composition of aquatic invertebrates is relatively constant. Variation in elemental composition among taxa at various higher taxonomic levels suggests that susceptibility of stream invertebrates to nutrient limitation and their role in nutrient cycling will strongly depend on phylogeny. [source] Body size and the timing of egg production in parasitoid wasps: a comparative analysisFUNCTIONAL ECOLOGY, Issue 3 2003M. A. Jervis Summary 1.,The ovigeny index, previously identified as both a significant fitness variable in parasitoid wasps and an important factor in parasitoid,host population dynamics, is the proportion of the maximum potential lifetime complement of eggs that is mature when the female emerges into the environment following pupal development. We tested the hypothesis that ovigeny index varies with female body size in parasitoid wasps. Body size measurements were obtained for 40 species in 13 families, representing a broad taxonomic and morphological diversity of parasitoid wasps. There was an almost 18-fold difference in size between the smallest and the largest species. 2.,Ovigeny index is shown to be negatively correlated with body size across species , smaller wasps have a higher proportion of eggs mature at emergence than do larger wasps , a result supporting the hypothesis. This relationship has previously been observed within species. 3.,The previously reported cross-species negative correlation between life-span and ovigeny index is robust, as it still holds when variation in body size is controlled for. 4.,We discuss the likely selective factors in the evolution of a link between ovigeny index and body size across species. [source] Assembly rules and functional groups at global biogeographical scalesFUNCTIONAL ECOLOGY, Issue 5 2002D. R. Bellwood Summary 1The taxonomic and functional composition of reef fish assemblages are quantified in three biogeographical regions: Great Barrier Reef, French Polynesia and Caribbean. Assemblages are described in three habitats of differing wave exposure. Functional abilities are estimated based on published analyses linking fin morphology and swimming performance. 2Two questions were addressed: (1) To what extent are labrid assemblages similar among habitats and regions? (2) To what extent are functional characteristics of fish assemblages shaped by differences in biodiversity, evolutionary history and species composition? 3All three regions display highly congruent patterns of habitat use, in terms of assemblage structure and functional characteristics, despite a five-fold difference in species richness, limited or no species overlap, and a 3·2-Myear history of isolation. Exposed reef crest assemblages were dominated by fishes with fins reflecting lift-based high-speed locomotion. In contrast to abundance-based patterns, species presence/absence data were uninformative. 4The relationship between swimming ability and habitat use reveals underlying assembly rules at a functional level, emphasizing the utility of functional attributes as a metric for comparing system-level properties in taxonomically distinct faunas. [source] Targeted genomic detection of biosynthetic pathways: anaerobic production of hopanoid biomarkers by a common sedimentary microbeGEOBIOLOGY, Issue 1 2005W. W. FISCHER ABSTRACT The lipid biomarker principle requires that preservable molecules (molecular fossils) carry specific taxonomic, metabolic, or environmental information. Historically, an empirical approach was used to link specific taxa with the compounds they produce. The lipids extracted from numerous, but randomly cultured species provided the basis for the interpretation of biomarkers in both modern environments and in the geological record. Now, with the rapid sequencing of hundreds of microbial genomes, a more focused genomic approach can be taken to test phylogenetic patterns and hypotheses about the origins of biomarkers. Candidate organisms can be selected for study on the basis of genes that encode proteins fundamental to the synthesis of biomarker compounds. Hopanoids, a class of pentacyclic triterpenoid lipid biomarkers, provide an illustrative example. For many years, interpretations of biomarker data were made with the assumption that hopanoids are produced only by aerobic organisms. However, the recent discovery of 13C-depleted hopanoids in environments undergoing anaerobic methane oxidation and in enrichment cultures of anammox planctomycetes indicates that some hopanoids are produced anaerobically. To further examine the potential distribution of hopanoid biosynthesis by anaerobes, we searched publicly available genomic databases for the presence of squalene-hopene cyclase genes in known obligate or facultative anaerobes. Here we present evidence that Geobacter sulfurreducens, Geobacter metallireducens, and Magnetospirillum magnetotacticum, all bacteria common in anoxic environments, have the appropriate genes for hopanoid biosynthesis. We further show that these data accurately predict that G. sulfurreducens does produce a variety of complex hopanoids under strictly anaerobic conditions in pure culture. [source] Geographical and taxonomic influences on cranial variation in red colobus monkeys (Primates, Colobinae): introducing a new approach to ,morph' monkeysGLOBAL ECOLOGY, Issue 2 2009Andrea Cardini ABSTRACT Aim, To provide accurate but parsimonious quantitative descriptions of clines in cranial form of red colobus, to partition morphological variance into geographical, taxonomic and structured taxonomic components, and to visually summarize clines in multivariate shape data using a method which produces results directly comparable to both univariate studies of geographical variation and standard geometric morphometric visualization of shape differences along vectors. Location, Equatorial Africa. Methods, Sixty-four three-dimensional cranial landmarks were measured on 276 adult red colobus monkeys sampled over their entire distribution. Geometric morphometric methods were applied, and size and shape variables regressed onto geographical coordinates using linear and curvilinear models. Model selection was done using the second-order Akaike information criterion. Components of variation related to geography, taxon or their combined effect were partitioned using partial regresssion. Multivariate trends in clinal shape were summarized using principal components of predictions from regressions, plotting vector scores on maps as for univariate size, and visualizing differences along main axes of clinal shape variation using surface rendering. Results, Significant clinal variation was found in size and shape. Clines were similar in females and males. Trend surface analysis tended to be more accurate and parsimonious than alternative models in predicting morphology based on geography. Cranial form was relatively paedomorphic in East Africa and peramorphic in central Africa. Most taxonomic variation was geographically structured. However, taxonomic differences alone accounted for a larger proportion of total explained variance in shape (up to 40%) than in size (, 20%). Main conclusions, A strong cline explained most of the observed size variation and a significant part of the shape differences of red colobus crania. The pattern of geographical variation was largely similar to that previously reported in vervets, despite different habitat preferences (arboreal versus terrestrial) and a long period since divergence (c. 14,15 Myr). This suggests that some aspects of morphological divergence in both groups may have been influenced by similar environmental, geographical and historical factors. Cranial size is likely to be evolutionarily more labile and thus better reflects the influence of recent environmental changes. Cranial shape could be more resilient to change and thus better reflects phylogenetically informative differences. [source] Elevation gradients of species-density: historical and prospective viewsGLOBAL ECOLOGY, Issue 1 2001MARK. V. Lomolino Abstract Studies of elevation clines in diversity and composition of ecological communities date back to the origins of biogeography. A modern resurgence of interests in these elevational clines is likely to contribute important insights for developing a more general theory of species diversity. In order to gain a more comprehensive understanding of geographical clines in diversity, the research programme for montane biogeography should include statistically rigorous tests of apparent patterns, comparisons of patterns among regions and taxonomic or ecological groups of species, and analyses of clines in environmental variables concurrent with biogeographical surveys. The conceptual framework for this research programme should be based on the assumption that elevational gradients in species diversity result from a combination of ecological and evolutionary processes, rather than the presumed independent effects of one overriding force. Given that montane ecosystems are hot spots of biological diversity, an expanded and integrated programme for biogeographic surveys in montane regions should provide valuable insights for conservation biologists. [source] Diversity of the rodent communities in the Turan Desert regionINTEGRATIVE ZOOLOGY (ELECTRONIC), Issue 4 2006Valery M. NERONOV Abstract We assessed the diversity of rodent communities in the deserts of Russia, Kazakhstan, and Central Asia using geographic information system technology. There are 66 species of rodents, belonging to eight faunistic complexes, inhabiting this area. We discuss the geographical changes occurring in taxonomic and zoogeographic diversity at both species and community levels. Communities of gerbils and jerboas dominate in the Turan Desert region (66% of the area). Steppe communities of susliks penetrate the deserts from the north. Farming in deserts causes the replacement of native rodent communities with mouse communities or completely eradicates rodents in their main habitats. [source] Regional variability in secondary remodeling within long bone cortices of catarrhine primates: the influence of bone growth historyJOURNAL OF ANATOMY, Issue 3 2008Shannon C. McFarlin Abstract Secondary intracortical remodeling of bone varies considerably among and within vertebrate skeletons. Although prior research has shed important light on its biomechanical significance, factors accounting for this variability remain poorly understood. We examined regional patterning of secondary osteonal bone in an ontogenetic series of wild-collected primates, at the midshaft femur and humerus of Chlorocebus (Cercopithecus) aethiops (n = 32) and Hylobates lar (n = 28), and the midshaft femur of Pan troglodytes (n = 12). Our major objectives were: 1) to determine whether secondary osteonal bone exhibits significant regional patterning across inner, mid-cortical and outer circumferential cortical rings within cross-sections; and if so, 2) to consider the manner in which this regional patterning may reflect the influence of relative tissue age and other circumstances of bone growth. Using same field-of-view images of 100-µm-thick cross-sections acquired in brightfield and circularly polarized light microscopy, we quantified the percent area of secondary osteonal bone (%HAV) for whole cross-sections and across the three circumferential rings within cross-sections. We expected bone areas with inner and middle rings to exhibit higher %HAV than the outer cortical ring within cross-sections, the latter comprising tissues of more recent depositional history. Observations of primary bone microstructural development provided an additional context in which to evaluate regional patterning of intracortical remodeling. Results demonstrated significant regional variability in %HAV within all skeletal sites. As predicted,%HAV was usually lowest in the outer cortical ring within cross-sections. However, regional patterning across inner vs. mid-cortical rings showed a more variable pattern across taxa, age classes, and skeletal sites examined. Observations of primary bone microstructure revealed that the distribution of endosteally deposited bone had an important influence on the patterning of secondary osteonal bone across rings. Further, when present, endosteal compacted coarse cancellous bone always exhibited some evidence of intracortical remodeling, even in those skeletal sites exhibiting comparatively low %HAV overall. These results suggest that future studies should consider the local developmental origin of bone regions undergoing secondary remodeling later in life, for an improved understanding of the manner in which developmental and mechanical factors may interact to produce the taxonomic and intraskeletal patterning of secondary bone remodelling in adults. [source] Biotic homogenization: a new research agenda for conservation biogeographyJOURNAL OF BIOGEOGRAPHY, Issue 12 2006Julian D. Olden Abstract Aim, Biotic homogenization describes the process by which species invasions and extinctions increase the genetic, taxonomic or functional similarity of two or more biotas over a specified time interval. The study of biotic homogenization is a young and rapidly emerging research area in the budding field of conservation biogeography, and this paper aims to synthesize our current knowledge of this process and advocate a more systematic approach to its investigation. Methods, Based on a comprehensive examination of the primary literature this paper reviews the process of biotic homogenization, including its definition, quantification, underlying ecological mechanisms, environmental drivers, the empirical evidence for different taxonomic groups, and the potential ecological and evolutionary implications. Important gaps in our knowledge are then identified, and areas of new research that show the greatest promise for advancing our current thinking on biotic homogenization are highlighted. Results, Current knowledge of the patterns, mechanisms and implications of biotic homogenization is highly variable across taxonomic groups, but in general is incomplete. Quantitative estimates are almost exclusively limited to freshwater fishes and plants in the United States, and the principal mechanisms and drivers of homogenization remain elusive. To date research has focused on taxonomic homogenization, and genetic and functional homogenization has received inadequate attention. Trends over the past decade, however, suggest that biotic homogenization is emerging as a topic of greater research interest. Main conclusions, My investigation revealed a number of important knowledge gaps and priority research needs in the science of biotic homogenization. Future studies should examine the homogenization process for different community properties (species occurrence and abundance) at multiple spatial and temporal scales, with careful attention paid to the various biological mechanisms (invasions vs. extinctions) and environmental drivers (environmental alteration vs. biotic interactions) involved. Perhaps most importantly, this research should recognize that there are multiple possible outcomes resulting from the accumulation of species invasions and extinctions, including biotic differentiation whereby genetic, taxonomic or functional similarity of biotas decreases over time. [source] Patterns of species richness on very small islands: the plants of the Aegean archipelagoJOURNAL OF BIOGEOGRAPHY, Issue 7 2006Maria Panitsa Abstract Aim, To investigate the species,area relationship (SAR) of plants on very small islands, to examine the effect of other factors on species richness, and to check for a possible Small Island Effect (SIE). Location, The study used data on the floral composition of 86 very small islands (all < 0.050 km2) of the Aegean archipelago (Greece). Methods, We used standard techniques for linear and nonlinear regression in order to check several models of the SAR, and stepwise multiple regression to check for the effects of factors other than area on species richness (,habitat diversity', elevation, and distance from nearest large island), as well as the performance of the Choros model. We also checked for the SAR of certain taxonomic and ecological plant groups that are of special importance in eastern Mediterranean islands, such as halophytes, therophytes, Leguminosae and Gramineae. We used one-way anova to check for differences in richness between grazed and non-grazed islands, and we explored possible effects of nesting seabirds on the islands' flora. Results, Area explained a small percentage of total species richness variance in all cases. The linearized power model of the SAR provided the best fit for the total species list and several subgroups of species, while the semi-log model provided better fits for grazed islands, grasses and therophytes. None of the nonlinear models explained more variance. The slope of the SAR was very high, mainly due to the contribution of non-grazed islands. No significant SIE could be detected. The Choros model explained more variance than all SARs, although a large amount of variance of species richness still remained unexplained. Elevation was found to be the only important factor, other than area, to influence species richness. Habitat diversity did not seem important, although there were serious methodological problems in properly defining it, especially for plants. Grazing was an important factor influencing the flora of small islands. Grazed islands were richer than non-grazed, but the response of their species richness to area was particularly low, indicating decreased floral heterogeneity among islands. We did not detect any important effects of the presence of nesting seabird colonies. Main conclusions, Species richness on small islands may behave idiosyncratically, but this does not always lead to a typical SIE. Plants of Aegean islets conform to the classical Arrhenius model of the SAR, a result mainly due to the contribution of non-grazed islands. At the same time, the factors examined explain a small portion of total variance in species richness, indicating the possible contribution of other, non-standard factors, or even of stochastic effects. The proper definition of habitat diversity as pertaining to the taxon examined in each case is a recurrent problem in such studies. Nevertheless, the combined effect of area and a proxy for environmental heterogeneity is once again superior to area alone in explaining species richness. [source] Spatial analysis of taxonomic and genetic patterns and their potential for understanding evolutionary historiesJOURNAL OF BIOGEOGRAPHY, Issue 11 2004Sophia A. Bickford Abstract Aim, The aim of this research is to develop and investigate methods for the spatial analysis of diversity based on genetic and taxonomic units of difference. We use monophyletic groups of species to assess the potential for these diversity indices to elucidate the geographical components of macro-scaled evolutionary processes. Location, The range occupied by Pultenaea species in temperate and sub-tropical eastern Australia, extending from western South Australia (133° E,32° S) to Tasmania (146° E,43° S) to coastal central Queensland (148° E,20° S). Methods, We applied a series of both spatially explicit and spatially implicit analyses to explore the nature of diversity patterns in the genus Pultenaea, Fabaceae. We first analysed the eastern species as a whole and then the phylogenetic groups within them. We delineated patterns of endemism and biotic (taxon) regions that have been traditionally circumscribed in biogeographical studies of taxa. Centres of endemism were calculated using corrected weighted endemism at a range of spatial scales. Biotic regions were defined by comparing the similarity of species assemblages of grid cells using the Jaccard index and clustering similar cells using hierarchical clustering. On the basis that genetically coherent areas were likely to be more evolutionary informative than species patterns, genetic indices of similarity and difference were derived. A matrix of similarity distances between taxa was generated based on the number of shared informative characters of two sections of trnL-F and ndhF chloroplast nuclear regions. To identify genetically similar areas, we clustered cells using the mean genetic similarities of the species contained within each pair of cells. Measures of the mean genetic similarity of species in areas were delineated using a geographically local multi-scalar approach. Resultant patterns of genetic diversity are interpreted in relation to theories of the evolutionary relationships between species and species groups. Results, Centres of Pultenaea endemism were defined, those of clades 1 congruent with the spatially separated centres of clades 2 and 3. The taxonomic classification analysis defined cells with shared groups of species, which in some cases clustered when plotted in geographic space, defining biotic regions. In some instances the distribution of biotic regions was congruent with centres of endemism, however larger scale groupings were also apparent. In clade 1 one set of species was replaced by another along the extent of the range, with some connectivity between some geographically disjunct regions due to the presence of widespread species. In the combined analysis of clade 2 and 3 species the major biotic (taxonomic) groups with geographic coherence were defined by species in the respective clades, representing the geographic separation of these clades. However distinctive biotic regions within these main groupings of clades 2 and 3 were also apparent. Clustering cells using the mean genetic similarities of the species contained within each pair of cells indicated that some of the taxonomically defined biotic boundaries were the result of changes in composition of closely related species. This was most apparent in clades 1 and 2 where most cells were highly genetically similar. In clade 3 genetically distinct groups remained and were in part defined by sister taxa with disjunct distributions. Gradients in mean genetic similarity became more apparent from small to larger scales of analysis. At larger scales of analysis, regions of different levels of genetic diversity were delineated. Regions with highest diversity levels (lowest level of similarity) often represented regions where the ranges of phylogenetically distinctive species intergraded. Main conclusions, The combined analysis of diversity, phylogeny and geography has potential to reveal macro-scaled evolutionary patterns from which evolutionary processes may be inferred. The spatial genetic diversity indices developed in this study contribute new methods for identifying coherent evolutionary units in the landscape, which overcome some of the limitations of using taxonomic data, and from which the role of geography in evolutionary processes can be tested. We also conclude that a multiple-index approach to diversity pattern analysis is useful, especially where patterns may be the result of a long history of different environmental changes and related evolutionary events. The analysis contributes to the knowledge of large-scale diversity patterns of Pultenaea which has relevance for the assessment of the conservation status of the genus. [source]
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