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Substrate Supply (substrate + supply)
Selected AbstractsSubstrate Supply for Effective BiocatalysisBIOTECHNOLOGY PROGRESS, Issue 1 2007Pei-Yi Kim Using biocatalysis for some chemical synthesis steps has unique advantages such as achieving higher product selectivity under ambient process conditions. However, a common limitation with such systems is the inhibition or toxicity posed by the starting substrate as well as limited aqueous solubility in many cases. In this review, we discuss the supply of substrate to bioconversions. The delivery of substrate via an auxiliary, which may be water-miscible, or a second phase such as a water-immiscible organic solvent, adsorbing resin, or a gas, is examined through recent examples in the field. Finally, guidelines for experimental planning and process considerations are suggested to facilitate the choice of substrate delivery method and accelerate process development. [source] Seasonal variation in rates of methane production from peat of various botanical origins: effects of temperature and substrate qualityFEMS MICROBIOLOGY ECOLOGY, Issue 3 2000Inger Bergman Abstract The methane produced in peat soils can vary over the growing season due to variations in the supply of available substrate, the activity of the microbial community or changes in temperature. Our aim was to study how these factors regulate the methane production over the season from five different peat types of different botanical origin. Peat samples were collected on seven occasions between June and September. After each sampling, the peat soils were incubated at five different temperatures (7, 10, 15, 20 and 25°C) without added substrate, or at 20°C with added substrate (glucose, or H2/CO2, or starch). Rates of methane production averaged over the season differed significantly (P<0.05, R2=0.76) among the five peat types, the minerotrophic lawn producing the highest rates, and the hummock peat producing the lowest. The seasonal average Q10 values for each plant community varied between 4.6 and 9.2, the highest value being associated with the ombrotrophic lawn and the lowest value with the mud-bottom plant community. For the unamended peat samples, the rates of methane production from each plant community varied significantly (P<0.05) over the season. This implies that the quality of organic matter, in combination with changes in temperature, explains the seasonal variation in methane production. However, addition of saturating amounts of glucose, H2/CO2 or starch at 20°C significantly reduced the seasonal variation (P<0.05) in methane production in peat from the minerotrophic lawn, wet carpet and mud-bottom plant communities. This suggests that substrate supply (e.g. root exudates) for the micro-organisms also varied over the season at these sites. Seasonal variation in methane production rates was apparent in peat from the hummock and ombrotrophic lawn plant communities even after addition of substrates, suggesting that the active biomass of the anaerobic microbial populations at these sites was regulated by other factors than the ones studied. [source] Increasing CO2 from subambient to elevated concentrations increases grassland respiration per unit of net carbon fixationGLOBAL CHANGE BIOLOGY, Issue 8 2006H. WAYNE POLLEY Abstract Respiration (carbon efflux) by terrestrial ecosystems is a major component of the global carbon (C) cycle, but the response of C efflux to atmospheric CO2 enrichment remains uncertain. Respiration may respond directly to an increase in the availability of C substrates at high CO2, but also may be affected indirectly by a CO2 -mediated alteration in the amount by which respiration changes per unit of change in temperature or C uptake (sensitivity of respiration to temperature or C uptake). We measured CO2 fluxes continuously during the final 2 years of a 4-year experiment on C3/C4 grassland that was exposed to a 200,560 ,mol mol,1 CO2 gradient. Flux measurements were used to determine whether CO2 treatment affected nighttime respiration rates and the response of ecosystem respiration to seasonal changes in net C uptake and air temperature. Increasing CO2 from subambient to elevated concentrations stimulated grassland respiration at night by increasing the net amount of C fixed during daylight and by increasing either the sensitivity of C efflux to daily changes in C fixation or the respiration rate in the absence of C uptake (basal ecosystem respiration rate). These latter two changes contributed to a 30,47% increase in the ratio of nighttime respiration to daytime net C influx as CO2 increased from subamient to elevated concentrations. Daily changes in net C uptake were highly correlated with variation in temperature, meaning that the shared contribution of C uptake and temperature in explaining variance in respiration rates was large. Statistically controlling for collinearity between temperature and C uptake reduced the effect of a given change in C influx on respiration. Conversely, CO2 treatment did not affect the response of grassland respiration to seasonal variation in temperature. Elevating CO2 concentration increased grassland respiration rates by increasing both net C input and respiration per unit of C input. A better understanding of how C efflux varies with substrate supply thus may be required to accurately assess the C balance of terrestrial ecosystems. [source] Vertical partitioning of CO2 production within a temperate forest soilGLOBAL CHANGE BIOLOGY, Issue 6 2006ERIC A. DAVIDSON Abstract The major driving factors of soil CO2 production , substrate supply, temperature, and water content , vary vertically within the soil profile, with the greatest temporal variations of these factors usually near the soil surface. Several studies have demonstrated that wetting and drying of the organic horizon contributes to temporal variation in summertime soil CO2 efflux in forests, but this contribution is difficult to quantify. The objectives of this study were to partition CO2 production vertically in a mixed hardwood stand of the Harvard Forest, Massachusetts, USA, and then to use that partitioning to evaluate how the relative contributions of CO2 production by genetic soil horizon vary seasonally and interannually. We measured surface CO2 efflux and vertical soil profiles of CO2 concentration, temperature, water content, and soil physical characteristics. These data were applied to a model of effective diffusivity to estimate CO2 flux at the top of each genetic soil horizon and the production within each horizon. A sensitivity analysis revealed sources of uncertainty when applying a diffusivity model to a rocky soil with large spatial heterogeneity, especially estimates of bulk density and volumetric water content and matching measurements of profiles and surface fluxes. We conservatively estimate that the O horizon contributed 40,48% of the total annual soil CO2 efflux. Although the temperature sensitivity of CO2 production varied across soil horizons, the partitioning of CO2 production by horizon did not improve the overall prediction of surface CO2 effluxes based on temperature functions. However, vertical partitioning revealed that water content covaried with CO2 production only in the O horizon. Large interannual variations in estimates of O horizon CO2 production indicate that this layer could be an important transient interannual source or sink of ecosystem C. [source] On the variability of respiration in terrestrial ecosystems: moving beyond Q10GLOBAL CHANGE BIOLOGY, Issue 2 2006ERIC A. DAVIDSON Abstract Respiration, which is the second most important carbon flux in ecosystems following gross primary productivity, is typically represented in biogeochemical models by simple temperature dependence equations. These equations were established in the 19th century and have been modified very little since then. Recent applications of these equations to data on soil respiration have produced highly variable apparent temperature sensitivities. This paper searches for reasons for this variability, ranging from biochemical reactions to ecosystem-scale substrate supply. For a simple membrane-bound enzymatic system that follows Michaelis,Menten kinetics, the temperature sensitivities of maximum enzyme activity (Vmax) and the half-saturation constant that reflects the affinity of the enzyme for the substrate (Km) can cancel each other to produce no net temperature dependence of the enzyme. Alternatively, when diffusion of substrates covaries with temperature, then the combined temperature sensitivity can be higher than that of each individual process. We also present examples to show that soluble carbon substrate supply is likely to be important at scales ranging from transport across membranes, diffusion through soil water films, allocation to aboveground and belowground plant tissues, phenological patterns of carbon allocation and growth, and intersite differences in productivity. Robust models of soil respiration will require that the direct effects of substrate supply, temperature, and desiccation stress be separated from the indirect effects of temperature and soil water content on substrate diffusion and availability. We speculate that apparent Q10 values of respiration that are significantly above about 2.5 probably indicate that some unidentified process of substrate supply is confounded with observed temperature variation. [source] Methane efflux in relation to plant biomass and sediment characteristics in stands of three common emergent macrophytes in boreal mesoeutrophic lakesGLOBAL CHANGE BIOLOGY, Issue 1 2005Paula Kankaala Abstract Methane efflux was studied in stands of three emergent macrophyte species (Equisetum fluviatile, Schoenoplectus lacustris and Phragmites australis) commonly found in the littoral zone of boreal lakes. In vegetation stands with relatively low methane (CH4) emissions (<0.3 mol m,2 (ice-free period),1), the seasonal variation of CH4 efflux was better correlated with the dynamics of plant growth than variation in sediment temperature. In dense and productive vegetation stands that released high amounts of CH4 (2.3,7.7 mol m,2 (ice-free period),1), the seasonal variation in CH4 efflux was correlated with sediment temperature, indicating that methanogens were more limited by temperature than substrate supply. The bottom type at the growth site of the emergent plants significantly influenced the ratio of CH4 efflux to aboveground biomass of plants (Eff : B). The lowest Eff : B ratio was found in E. fluviatile stands growing on sand bottom under experimental conditions and the highest in P. australis -dominated littoral areas accumulating detritus from external sources. The future changes expected in the hydrology of boreal lakes and rivers because of climatic warming may impact the growth conditions of aquatic macrophytes as well as decomposition and accumulation of detritus and, thus, CH4 effluxes from boreal lakes. [source] Pristine New Zealand forest soil is a strong methane sinkGLOBAL CHANGE BIOLOGY, Issue 1 2004Sally J. Price Abstract Methanotrophic bacteria oxidize methane (CH4) in forest soils that cover ,30% of Earth's land surface. The first measurements for a pristine Southern Hemisphere forest are reported here. Soil CH4 oxidation rate averaged 10.5±0.6 kg CH4 ha,1 yr,1, with the greatest rates in dry warm soil (up to 17 kg CH4 ha,1 yr,1). Methanotrophic activity was concentrated beneath the organic horizon at 50,100 mm depth. Water content was the principal regulator of (r2=0.88) from the most common value of field capacity to less than half of this when the soil was driest. Multiple linear regression analysis showed that soil temperature was not very influential. However, inverse co-variability confounded the separation of soil water and temperature effects in situ. Fick's law explained the role of water content in regulating gas diffusion and substrate supply to the methanotrophs and the importance of pore size distribution and tortuosity. This analysis also showed that the chambers used in the study did not affect the oxidation rate measurements. The soil was always a net sink for atmospheric CH4 and no net CH4 (or nitrous oxide, N2O) emissions were measured over the 17-month long study. For New Zealand, national-scale extrapolation of our data suggested the potential to offset 13% of CH4 emissions from ca. 90 M ruminant animals. Our average was about 6.5 times higher than rates reported for most Northern Hemisphere forest soils. This very high was attributed to the lack of anthropogenic disturbance for at least 3000,5000 years and the low rate of atmospheric nitrogen deposition. Our truly baseline data could represent a valid preagricultural, preindustrial estimate of the soil sink for temperate latitudes. [source] Fine-root respiration in a loblolly pine (Pinus taeda L.) forest exposed to elevated CO2 and N fertilizationPLANT CELL & ENVIRONMENT, Issue 11 2008JOHN E. DRAKE ABSTRACT Forest ecosystems release large amounts of carbon to the atmosphere from fine-root respiration (Rr), but the control of this flux and its temperature sensitivity (Q10) are poorly understood. We attempted to: (1) identify the factors limiting this flux using additions of glucose and an electron transport uncoupler (carbonyl cyanide m-chlorophenylhydrazone); and (2) improve yearly estimates of Rr by directly measuring its Q10in situ using temperature-controlled cuvettes buried around intact, attached roots. The proximal limits of Rr of loblolly pine (Pinus taeda L.) trees exposed to free-air CO2 enrichment (FACE) and N fertilization were seasonally variable; enzyme capacity limited Rr in the winter, and a combination of substrate supply and adenylate availability limited Rr in summer months. The limiting factors of Rr were not affected by elevated CO2 or N fertilization. Elevated CO2 increased annual stand-level Rr by 34% whereas the combination of elevated CO2 and N fertilization reduced Rr by 40%. Measurements of in situ Rr with high temporal resolution detected diel patterns that were correlated with canopy photosynthesis with a lag of 1 d or less as measured by eddy covariance, indicating a dynamic link between canopy photosynthesis and root respiration. These results suggest that Rr is coupled to daily canopy photosynthesis and increases with carbon allocation below ground. [source] Intestinal and hepatic metabolism of glutamine and citrulline in humansTHE JOURNAL OF PHYSIOLOGY, Issue 2 2007Marcel C. G. Van De Poll Glutamine plays an important role in nitrogen homeostasis and intestinal substrate supply. It has been suggested that glutamine is a precursor for arginine through an intestinal,renal pathway involving inter-organ transport of citrulline. The importance of intestinal glutamine metabolism for endogenous arginine synthesis in humans, however, has remained unaddressed. The aim of this study was to investigate the intestinal conversion of glutamine to citrulline and the effect of the liver on splanchnic citrulline metabolism in humans. Eight patients undergoing upper gastrointestinal surgery received a primed continuous intravenous infusion of [2- 15N]glutamine and [ureido- 13C,2H2]citrulline. Arterial, portal venous and hepatic venous blood were sampled and portal and hepatic blood flows were measured. Organ specific amino acid uptake (disposal), production and net balance, as well as whole body rates of plasma appearance were calculated according to established methods. The intestines consumed glutamine at a rate that was dependent on glutamine supply. Approximately 13% of glutamine taken up by the intestines was converted to citrulline. Quantitatively glutamine was the only important precursor for intestinal citrulline release. Both glutamine and citrulline were consumed and produced by the liver, but net hepatic flux of both amino acids was not significantly different from zero. Plasma glutamine was the precursor of 80% of plasma citrulline and plasma citrulline in turn was the precursor of 10% of plasma arginine. In conclusion, glutamine is an important precursor for the synthesis of arginine after intestinal conversion to citrulline in humans. [source] | ||||||||||