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Substrate Preference (substrate + preference)
Selected AbstractsEvolution and development of the primate limb skeletonEVOLUTIONARY ANTHROPOLOGY, Issue 3 2002Chi-Hua Chiu Abstract The order Primates is composed of many closely related lineages, each having a relatively well established phylogeny supported by both the fossil record and molecular data.1 Primate evolution is characterized by a series of adaptive radiations beginning early in the Cenozoic era. Studies of these radiations have uncovered two major trends. One is that substantial amounts of morphological diversity have been produced over short periods of evolutionary time.2 The other is that consistent and repeated patterns (variational tendencies3) are detected. Taxa within clades, such as the strepsirrhines of Madagascar and the platyrrhines of the Neotropics, have diversified in body size, substrate preference, and diet.2, 4,6 The diversification of adaptive strategies within such clades is accompanied by repeated patterns of change in cheiridial proportions7, 8 (Fig. 1) and tooth-cusp morphology.9 There are obvious adaptive, natural-selection based explanations for these patterns. The hands and feet are in direct contact with a substrate, so their form would be expected to reflect substrate preference, whereas tooth shape is related directly to the functional demands of masticating foods having different mechanical properties. What remains unclear, however, is the role of developmental and genetic processes that underlie the evolutionary diversity of the primate body plan. Are variational tendencies a signature of constraints in developmental pathways? What is the genetic basis for similar morphological transformations among closely related species? These are a sampling of the types of questions we believe can be addressed by future research integrating evidence from paleontology, comparative morphology, and developmental genetics. [source] Expression of FGFR3 with the G380R Achondroplasia Mutation Inhibits Proliferation and Maturation of CFK2 Chondrocytic CellsJOURNAL OF BONE AND MINERAL RESEARCH, Issue 1 2000Janet E. Henderson Abstract A G380R substitution in the transmembrane-spanning region of FGFR3 (FGFR3Ach) results in constitutive receptor kinase activity and is the most common cause of achondroplastic dwarfism in humans. The epiphyseal growth plates of affected individuals are disorganized and hypocellular and show aberrant chondrocyte maturation. To examine the molecular basis of these abnormalities, we used a chondrocytic cell line, CFK2, to stably express the b variant of wild-type FGFR3 or the the constitutively active FGFR3Ach. Overexpression of FGFR3 had minimal effects on CFK2 proliferation and maturation compared with the severe growth retardation found in cells expressing FGFR3Ach. Cells expressing the mutant receptor also showed an abnormal apoptotic response to serum deprivation and failed to undergo differentiation under appropriate culture conditions. These changes were associated with altered expression of integrin subunits, which effectively led to a switch in substrate preference of the immature cell from fibronectin to type II collagen. These in vitro observations support those from in vivo studies indicating that FGFR3 mediates an inhibitory influence on chondrocyte proliferation. We now suggest that the mechanism is related to altered integrin expression. [source] KINETIC BEHAVIOR OF SOYBEAN LIPOXYGENASE: A COMPARATIVE STUDY OF THE FREE ENZYME AND THE ENZYME IMMOBILIZED IN AN ALGINATE SILICA SOL-GEL MATRIX,JOURNAL OF FOOD BIOCHEMISTRY, Issue 1 2000AN-FEI HSU Lipoxygenase (LOX) is an enzyme that regioselectively introduces a hydroperoxide into polyunsaturated fatty acids (PUFA). We recently reported a procedure that immobilizes soybean LOX within an alginate sol-gel matrix. In this study, the kinetic profile of free LOX was compared with that of the sol-gel immobilized LOX. The temperature dependent activity profile of free LOX was optimal at 25C whereas immobilized LOX had optimal activity over the temperature range of 25,35C. Enzyme activity, measured in aqueous buffer, for both the free and immobilized LOX preparations had Km values of 2.5 and 1.40 mmoles/L, respectively, and Vmax values of 0.056 and 0.02 ,mol/min, respectively. The relative rates of oxidation of linoleic acid and acylgfycerols containing linoleoyl residues catalyzed by free and immobilized LOX also were determined The results showed that both free and immobilized LOX favor linoleic acid as a substrate. Relative substrate preference for free LOX was linoleic acid >1-monolinolein > 1,3-dilinolein >trilinolein, and for immobilized LOX was linoleic acid >l, 3-dilinolein >1-monolinolein >trilinolein. In general, LOX immobilized in alginate silica sol-gel matrix retained the physical and chemical characteristics of free LOX. [source] Ecological correlates of infraorbital foramen area in primatesAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 1 2010Magdalena N. Muchlinski Abstract The infraorbital foramen (IOF) transmits the infraorbital nerve (ION) to specialized sensory cells (mechanoreceptors) in the maxillary region. The size of the IOF has been used in numerous paleoecological interpretations of the fossil record. However, these interpretations have been applied without an explicit analysis of the relationship between ecological variables and the IOF. ION and IOF cross-sectional area show a strong positive correlation. As a result, IOF area can be a proxy for ION area, and it is hypothesized that IOF area may be a good measure for maxillary somatosensory acuity. Differences in diet, substrate preference, and/or activity pattern have been shown to correlate with differences in maxillary somatosensory acuity among mammals. This study examines how IOF area covaries with different ecological variables. IOF area was measured for 89 primate species. Ecological profiles were also created for each species and used to evaluate interspecific variation in relative IOF area within each ecological category. The results show a significant relationship between relative IOF area and diet, but not substrate preference or activity pattern. Frugivores have significantly larger relative IOFs than either folivores or insectivores, but the relative IOFs of folivores and insectivores do not differ significantly from one another. These results partially support the hypothesis that maxillary mechanoreception is a critical sensory cue for primates within a feeding context. Results for this study suggest the IOF can be used as an informative character in some paleoecological interpretations of the primate fossil record. Am J Phys Anthropol, 2010. © 2009 Wiley-Liss, Inc. [source] Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis,THE PLANT JOURNAL, Issue 6 2006Petra Lamkemeyer Summary Peroxiredoxin Q (Prx Q) is one out of 10 peroxiredoxins encoded in the genome of Arabidopsis thaliana, and one out of four that are targeted to plastids. Peroxiredoxin Q functions as a monomeric protein and represents about 0.3% of chloroplast proteins. It attaches to the thylakoid membrane and is detected in preparations enriched in photosystem II complexes. Peroxiredoxin Q decomposes peroxides using thioredoxin as an electron donor with a substrate preference of H2O2 > cumene hydroperoxide , butyl hydroperoxide , linoleoyl hydroperoxide and insignificant affinity towards complex phospholipid hydroperoxide. Plants with decreased levels of Prx Q did not have an apparently different phenotype from wildtype at the plant level. However, similar to antisense 2-cysteine (2-Cys) Prx plants [Baier, M. et al. (2000)Plant Physiol., 124, 823,832], Prx Q-deficient plants had a decreased sensitivity to oxidants in a leaf slice test as indicated by chlorophyll a fluorescence measurements. Increased fluorescence ratios of photosystem II to I at 77 K and modified transcript levels of plastid- and nuclear-encoded proteins show that regulatory mechanisms are at work to compensate for the lack of Prx Q. Apparently Prx Q attaches to photosystem II and has a specific function distinct from 2-Cys peroxiredoxin in protecting photosynthesis. Its absence causes metabolic changes that are sensed and trigger appropriate compensatory responses. [source] A new crystal form of human diamine oxidaseACTA CRYSTALLOGRAPHICA SECTION F (ELECTRONIC), Issue 2 2010Aaron P. McGrath Copper amine oxidases (CAOs) are ubiquitous in nature and catalyse the oxidative deamination of primary amines to the corresponding aldehydes. Humans have three viable CAO genes (AOC1,3). AOC1 encodes human diamine oxidase (hDAO), which is the frontline enzyme for histamine metabolism. hDAO is unique among CAOs in that it has a distinct substrate preference for diamines. The structure of hDAO in space group P212121 with two molecules in the asymmetric unit has recently been reported. Here, the structure of hDAO refined to 2.1,Ĺ resolution in space group C2221 with one molecule in the asymmetric unit is reported. [source] High-Throughput Substrate Specificity Studies of Sialidases by Using Chemoenzymatically Synthesized Sialoside LibrariesCHEMBIOCHEM, Issue 2 2007Harshal A. Chokhawala Abstract Sialidases, or neuraminidases, are enzymes that cleave terminal sialic acid (Sia) residues from complex sialic acid-containing structures. They have been found in many animals and microorganisms and are important in various physiological and pathological processes. In order to understand the biological significance of diverse sialidases, it is important to study in detail the structural determinants of their natural substrates. Here, we report the synthesis of sialoside libraries containing para -nitrophenol-tagged sialosides with different naturally occurring sialic acid forms, different sialyl linkages, and different penultimate monosaccharides using a highly efficient one-pot three-enzyme chemoenzymatic approach. By using these compounds in a 96-well plate-based colorimetric high-throughput screening platform, the diversity of substrate preference is shown for seven bacterial sialidases. The sialoside libraries and the screening method are convenient tools for unravelling the substrate specificity and the biological function of sialidases. [source] Seasonal and substrate preferences of fungi colonizing leaves in streams: traditional versus molecular evidenceENVIRONMENTAL MICROBIOLOGY, Issue 2 2005Liliya G. Nikolcheva Summary Aquatic hyphomycetes are the main fungal decomposers of plant litter in streams. We compared the importance of substrate (three leaf species, wood) and season on fungal colonization. Substrates were exposed for 12 4-week periods. After recovery, mass loss, fungal biomass and release of conidia by aquatic hyphomycetes were measured. Fungal communities were characterized by counting and identifying released conidia and by extracting and amplifying fungal DNA (ITS2), which was subdivided into phylotypes by denaturing gradient gel electrophoresis (DGGE) and terminal-restriction fragment length polymorphism (T-RFLP). Mass loss, fungal biomass and reproduction were positively correlated with stream temperature. Conidial diversity was highest between May and September. Numbers of different phylotypes were more stable. Principal coordinate analyses (PCO) and canonical analyses of principal coordinates (CAP) of presence/absence data (DGGE bands, T-RFLP peaks and conidial species) showed a clear seasonal trend (P, 0.002) but no substrate effect (P, 0.88). Season was also a significant factor when proportional similarities of conidial communities or relative intensities of DGGE bands were evaluated (P, 0.003). Substrate was a significant factor determining DGGE band intensities (P = 0.002), but did not significantly affect conidial communities (P = 0.50). Both traditional and molecular techniques suggest that strict exclusion of fungi by substrate type is rare, and that presence of different species or phylotypes is governed by season. Biomasses of the various taxa (based on DGGE band intensities) were related to substrate type. [source] Biogeographical determinants of lichen species diversity on islets in the West-Estonian ArchipelagoJOURNAL OF VEGETATION SCIENCE, Issue 2 2006Inga Jüriado Abstract Questions: Do islet area, number of biotopes and distance from the mainland shape lichen species richness on islets? Are there any species- or substrate group-specific trends associated with these factors? Location: Islets of the west Estonian Archipelago, Estonia. Methods: A species list was compiled for each of the 32 islets and the relative abundance of each species was estimated. The lichens were divided into seven groups according to their substrate preferences. Generalized linear model (GLIM) analysis was applied to test the effect of the islet traits on the number of lichen species on the islets and in the substrate groups. The probability of presence/absence and abundance of the most frequent species according to the islet traits were tested with GLIM and general linear mixed model. Results: The lichen flora of the islets consisted of 326 taxa, the number of lichen species per islet varied from 2 to 197. Total number of species per islet and within the substrate groups was positively correlated with islet area and with number of biotopes, and negatively correlated with distance from the mainland; however, these relationships varied among the substrate groups. Although individual lichen species showed variation in responses, general trends in island biogeography were evident. Conclusions: The distribution pattern of lichens on the studied islets follows the theory of island biogeography: the number of species per islet depends on isolation, area and biotope diversity. Species specific traits, such as dispersal strategy and growth form, as well as availability of a particular substrate are important for formation of the lichen flora on islets. [source] Positive interactions between vulnerable species in agrarian pseudo-steppes: habitat use by pin-tailed sandgrouse depends on its association with the little bustardANIMAL CONSERVATION, Issue 4 2010C. A. Martín Abstract Positive interactions between species can have important conservation implications, especially when the species associating are both vulnerable. We studied the habitat use of pin-tailed sandgrouses Pterocles alchata and their association with another vulnerable species, the little bustard Tetrax tetrax in agrarian pseudo-steppes of central Spain using radio-tracking. The occurrence of mixed-species flocks varied seasonally, being more frequent in winter (65% of pin-tailed sandgrouse flocks). In this season, pin-tailed sandgrouses preferred stubble fields and fallows. Moreover, we found that habitat selection of pin-tailed sandgrouse depended on the association with little bustards in mixed-species flocks. When in mixed-species groups, sandgrouses changed their agrarian substrate preferences, and used stubble fields significantly more often than when in sandgrouse-only flocks. We also provide evidence that pin-tailed sandgrouse benefited from the anti-predator vigilance of little bustards, allowing sandgrouse to exploit new feeding grounds (stubble fields) that would otherwise be too risky to exploit. Our results indicate a close positive association between these two species, which are both declining in Europe, and we discuss implications for their management and conservation. We also recommend taking into account inter-specific positive interactions when designing conservation strategies for threatened species. [source] Cloning and Characterization of Long-Chain Fatty Alcohol Oxidase LjFAO1 in Lotus japonicusBIOTECHNOLOGY PROGRESS, Issue 3 2008Shilan Zhao The Lotus japonicus EST database was searched against Arabidopsis thalianaAtFAO3, a full-length cDNA that encodes a membrane-bound, flavin-containing, hydrogen peroxide generating, long-chain fatty alcohol oxidase. One EST fragment was detected, and the corresponding full-length cDNA was obtained by screening a cDNA library of L. japonicus. The LjFAO1 genomic DNA was amplified by PCR, to give a product 3.6 kb in length. Comparison between the LjFAO1 cDNA and genomic DNA revealed that the LjFAO1 contains 3 exons and 2 introns. RT-PCR analysis showed that the LjFAO1 was expressed in the whole plant, with the highest expression level in the apex and the lowest expression level in the siliques. The LjFAO1 gene was down-regulated by cold stress in both the apex and the cotelydon of the 8-day old seedlings, the first time that a long-chain alcohol oxidase has been shown to respond directly to stress. The full length cDNA and a C-terminal truncated version were overexpressed in Escherichia coli. The full length version of LjFAO1 exhibited long-chain fatty alcohol oxidase activity and was subsequently purified by Ni-NTA chromatography. The active LjFAO1 protein showed substrate specificities toward 1-dodecanol, 1-hexadecanol, and 1,16-hexadecanediol with Km values 59.6 ± 14.8 (,M), 40.9 ± 8.2 (,M) and 19.4 ± 1.5 (,M), respectively, suggesting apparent differences in substrate preferences with AtFAO3. [source] | |||||||||||||