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Subtypes I (subtype + i)

Distribution by Scientific Domains

Medical Sciences	50%
Life Sciences	50%

Selected Abstracts

Genetic Diversity of Cryphonectria hypovirus 1 in China, Japan and Italy

JOURNAL OF PHYTOPATHOLOGY, Issue 11-12 2007
F.-X. Liu
Abstract The aim of this study was to examine the origin of Cryphonectria hypovirus 1 (CHV1) which infects chestnut blight fungus, Cryphonectria parasitica. The genetic diversity of 39 CHV1 isolates from China, Japan and Italy was assessed by combining sequencing and restriction fragment length polymorphic (RFLP) experiments. Based on their partial sequences, 26 CHV1 isolates within 26 haplotypes were grouped into three subtypes. The 17 viruses from China were distributed between subtypes I and III, while all four of the isolates from Japan were subtype II. Of the five isolates from Italy, four were subtype I, and one (IT 192) was subtype III. Our analysis of the geographic distribution of the isolates indicated that all but one of the Chinese subtype III CHV1s are present in northern China; meanwhile all but three of the Chinese subtype I CHV1s are present in South China. Unlike in Europe where there is one predominant CHV1 subtype, our distribution analysis indicates that there has been gene flow between the populations in Asia. Cluster analysis based on the RFLP banding patterns showed that the viral isolates could be separated into four clusters. Most of the viral isolates (29 of 39, 74.4%) were grouped into one large cluster. Greater genetic diversity was observed among the CHV1s from China than among those from Japan and Italy. The Italian isolates were genetically more similar to the Japanese and South Chinese isolates than to the North Chinese isolates, indicating that CHV1 in Italy may have originated from Japan and/or South China. [source]

Occurrence of the African subgroup (Ia) of BK polyomavirus in younger Japanese children

MICROBIOLOGY AND IMMUNOLOGY, Issue 6 2009
Kaori Tanaka
ABSTRACT BK polyomavirus (BKV) is ubiquitous among humans, usually infecting them asymptomatically during childhood. BKV persists in renal tissue of individuals and their progeny are excreted in urine, particularly in immunocompromised patients. JC virus, another human polyomavirus, has been considered to be transmitted from parents to children during prolonged cohabitation. However, BKV has been supposed to be transmitted not only within but also outside the family. In the present study, to clarify this possibility, we analyzed phylogenetically 35 BKV which were excreted in the urine by Japanese children and adults undergoing stem cell transplantation. Subtypes I, III and IV were detected in 15, two and one children and in 15, one and one adults, respectively. Among 15 subtype I isolates from children, three, four and eight belonged to subgroups Ia, Ib-1 and Ic, respectively. All the three children from whom Ia was detected were less than 9 years old. In contrast in the adults, three subtype I belonged to Ib-1 and the other 12 to Ic. These findings may reflect the recent transmission of BKV Ia strains to Japanese children. [source]

Event-related potentials and white matter lesions in bipolar disorder

ACTA NEUROPSYCHIATRICA, Issue 1 2002
E. F. P. M. Vuurman
Objectives: To investigate neurophysiological parameters which possibly distinguish subtypes I and II of patients with a bipolar disorder, and contrast the findings with observations from a group of schizophrenic patients and a group of healthy controls. Methods: Sixty-six volunteers underwent a MRI scan to determine the number and location of white matter lesions (WSL). A electrophysiological registration was made while all volunteers performed a auditory ,oddball' task, and the amplitude of the resulting P300 wave was compared. Results: Earlier reports of higher numbers of WSL in bipolar disorder were not replicated in this study. Subtypes I and II showed a different P300 amplitude and subtype I resembled the results of the schizophrenia group. Conclusion: Bipolar patients in remission have a functional brain disorder that is expressed by a change in physiological response to external stimuli. [source]

Role of intestinal metaplasia subtyping in the risk of gastric cancer in Korea

JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, Issue 1 2009
Kyung P Kang
Abstract Background and Aim:, Gastric cancer is believed to develop by a multistage process. Intestinal metaplasia (IM) is regarded as a premalignant condition; it is classified into subtypes I, II and III. The aim of this study was to evaluate whether the subtypes of IM were associated with progression to gastric cancer. Methods:, The study cohort consisted of 861 subjects, categorized as controls, gastric ulcers, dysplasia and cancer. The IM was scored histologically using the Sydney classification for the antrum and the body of the stomach. The biopsies were stained with high iron diamine and alcian blue (pH 2.5) (HID-AB2.5), and the IM was subtyped as I, II or III. Results:, The proportion of IM subtypes I, II and III were 14.5%, 47.2% and 38.3% in the antrum, and 28.1%, 57.8% and 14.1% in the body of the stomach, respectively. These distributions did not show significant differences depending on disease or Helicobacter pylori positivity. In cases that were H. pylori -positive, the prevalence of IM subtype II in the cancer and dysplasia groups was higher than in the control group in the body of the stomach (P < 0.05). The proportion of IM subtype III in the antrum increased in proportion with age (P = 0.036). Conclusions:, IM subtyping was not found to play a major role in the prediction of gastric cancer development in Korea. IM subtype III was associated with aging, and IM subtype II appeared to be related to gastric carcinogenesis in the presence of H. pylori infection. [source]

Genetic Diversity of Cryphonectria hypovirus 1 in China, Japan and Italy

Comparison of the distribution patterns of BK polyomavirus lineages among China, Korea and Japan: Implications for human migrations in northeast Asia

MICROBIOLOGY AND IMMUNOLOGY, Issue 5 2009
Shan Zhong
ABSTRACT BKV is widespread among humans, infecting children asymptomatically and then persisting in renal tissue. Based on the serological or phylogenetic method, BKV isolates worldwide are classified into four subtypes (I,IV), with subtypes I and IV further divided into several genetically-distinct subgroups. Since, similarly to JCV, a close relationship exists between BKV lineages and human populations, BKV should be useful as a marker to trace human migrations. To elucidate ancient human migrations in northeast Asia, urine samples were collected from immunocompetent elderly patients in Shanghai, China; Anyang, South Korea; and various locations in Japan. Partial and complete BKV genomes from these samples were amplified and sequenced using PCR, and the determined sequences were classified into subtypes and subgroups by phylogenetic and SNP analyses. In addition, based on an SNP analysis, the major subtype I subgroup (I/c) was classified into two subdivisions, I/c/Ch and I/c/KJ. The distribution patterns of BKV subgroups and subdivisions among the three regions were compared. Some aspects of the subgroup and subdivision distribution were more similar between Korea and Japan, but others were more similar between China and Korea or between China and Japan. Based on these findings, we inferred various northeast Asian migrations. Most of the JCV-based inferences of northeastern Asian migrations were consistent with those based on BKV, but the previously suggested migration route from the Asian continent to the Japanese archipelago seemed to need revision. [source]