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Strong Selection Pressure (strong + selection_pressure)
Selected AbstractsProteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phylaENVIRONMENTAL MICROBIOLOGY, Issue 4 2007Jay McCarren Summary Since the recent discovery of retinylidene proteins in marine bacteria (proteorhodopsins), the estimated abundance and diversity of this gene family has expanded rapidly. To explore proteorhodopsin photosystem evolutionary and distributional trends, we identified and compared 16 different proteorhodopsin-containing genome fragments recovered from naturally occurring bacterioplankton populations. In addition to finding several deep-branching proteorhodopsin sequences, proteorhodopsins were found in novel taxonomic contexts, including a betaproteobacterium and a planctomycete. Approximately one-third of the proteorhodopsin-containing genome fragments analysed, as well as a number of recently reported marine bacterial whole genome sequences, contained a linked set of genes required for biosynthesis of the rhodopsin chromophore, retinal. Phylogenetic analyses of the retinal biosynthetic genes suggested their co-evolution and probable coordinated lateral gene transfer into disparate lineages, including Euryarchaeota, Planctomycetales, and three different proteobacterial lineages. The lateral transfer and retention of genes required to assemble a functional proteorhodopsin photosystem appears to be a coordinated and relatively frequent evolutionary event. Strong selection pressure apparently acts to preserve these light-dependent photosystems in diverse marine microbial lineages. [source] Highly avid, oligoclonal, early-differentiated antigen-specific CD8+ T cells in chronic HIV-2 infectionEUROPEAN JOURNAL OF IMMUNOLOGY, Issue 7 2010Aleksandra Leligdowicz Abstract HIV-1-specific CD8+ T cells are present in most HIV-1-infected people and play an important role in controlling viral replication, but the characteristics of an effective HIV-specific T-cell response are largely unknown. The majority of HIV-2-infected people behave as long-term non-progressors while those who progress to AIDS do so in a manner indistinguishable from HIV-1. A detailed study of HIV-2 infection may identify protective immune responses. Robust gag p26-specific T-cell responses are elicited during HIV-2 infection and correlate with control of viremia. In this study, we analyzed features of an HLA-B*3501-restricted T-cell response to HIV-2 p26 that may contribute to virus control. In contrast to HIV-1, HIV-2-specific T cells are at an early stage of differentiation (CD27+CD28+), a finding that relates directly to CD4+ T-cell levels and inversely to immune activation. The cells demonstrate IFN-, secretion, oligoclonal T-cell receptor V, gene segment usage, exceptional avidity and secretion of pro-inflammatory cytokines. Despite the potentially strong selection pressure imposed on the virus by these cells, there was no evidence of HIV-2 sequence evolution. We propose that in chronic HIV-2 infection, the maintenance of early-differentiated, highly avid CD8+ T cells could account for the non-progressive course of disease. Such responses may be desirable from an HIV vaccine. [source] L1 elements, processed pseudogenes and retrogenes in mammalian genomesIUBMB LIFE, Issue 12 2006Wenyong Ding Abstract Long interspersed nuclear elements 1 (L1 elements or LINE1) are the most active autonomous retrotransposons in mammalian genomes. In addition to L1 elements themselves, other protein-coding mRNAs can also be reverse transcribed and integrated into the genome through the L1-mediated retrotransposition, leading to the formation of processed pseudogenes (PPs) and retrogenes, both of which are characterized by the lack of introns and the presence of a 3' polyA tract and flanking direct repeats. PPs are unable to encode a functional protein and have accumulated frameshift mutations and premature stop codons during evolution. A few of PPs are transcriptionally active. Retrogenes preserve undisrupted coding frames and are capable of encoding a functional protein that is identical or nearly identical to that of the progenitor gene. There is a significant excess of retrogenes that originate from the X chromosome and are retrotransposed into autosomes, and most of these retrogenes are specially expressed in male germ cells, suggesting the inactivation of X-linked genes during male meiosis provides a strong selection pressure on retrogenes originating from the X chromosome. iubmb Life, 58: 677-685, 2006 [source] Selection for birth date in North Sea haddock and its relation to maternal ageJOURNAL OF ANIMAL ECOLOGY, Issue 2 2005PETER J. WRIGHT Summary 1Birth date can be important to lifetime reproductive success. However, selection for birth date has rarely been addressed in fish, despite the opportunity provided by otolith microstructure. 2This study examined the relationship between maternal age, spawning time and early survivorship in the North Sea haddock stock. Temporal changes in egg production were compared with the birth date distribution of progeny surviving to the demersal phase in 1994, 1996 and 1999, when the age structure of the spawning stock differed. 3Estimates of intra-annual variation in stock egg production indicated that first-time spawning 2-year-olds began spawning much later than older age-classes. 4The form and magnitude of selection on birth date varied between years, indicating that the production of multiple batches of eggs over an extended period has some adaptive significance to progeny survival. 5Survivorship was consistently poor from the late spawning period when age 2 females contributed most to stock egg production. This persistent selection against late hatched offspring could reflect either low parental investment, as age 2 females produce smaller eggs, or the short length of the growing season prior to settlement. 6Variability in birth date selection, particularly with respect to first vs. subsequent years of spawning, implies a strong selection pressure for a long reproductive lifespan. As such, reproductive potential in this and other exploited fish species with a similar reproductive trait may have been affected adversely by the general decline in repeat spawning females in recent years. [source] Polymorphism and signature of selection in the MHC class I genes of the three-spined stickleback Gasterosteus aculeatusJOURNAL OF FISH BIOLOGY, Issue 2006H. Schaschl The role and intensity of positive selection maintaining the polymorphism of major histocompatibility complex (MHC) class I genes in the three-spined stickleback Gasterosteus aculeatus was investigated. The highly polymorphic set of MHC class I genes found was organized in a single linkage group. Between 5 and 14 sequence variants per individual were identified by single-stranded conformation polymorphism (SSCP) analysis. Segregation analysis studied in 10 three-spined stickleback families followed the expected pattern of Mendelian inheritance. The gamete fusion in three-spined stickleback thus seems to be random with respect to the MHC class I genes. The DNA sequence analyses showed that the expressed MHC class I loci are under strong selection pressure, possibly mediated by parasites. Codons that were revealed to be under positive selection are potentially important in antigen binding. MHC class I sequences did not form significant supported clusters within a phylogenetic tree. Analogous to MHC class II genes, it was not possible to assign the class I sequences to a specific locus, suggesting that the class I genes may have been generated by recent gene duplication. [source] Biology of the European large raspberry aphid (Amphorophora idaei): its role in virus transmission and resistance breakdown in red raspberryAGRICULTURAL AND FOREST ENTOMOLOGY, Issue 1 2009Lindsay S. McMenemy Abstract 1,The European large raspberry aphid Amphorophora idaei Börner is the most important vector of viral diseases afflicting commercially grown red raspberry (Rubus idaeus L.) in Northern Europe, with European raspberry production amounting to 416 000 tonnes per annum. This review synthesizes existing knowledge on its biology and interactions with other organisms, including its host plant and the viral pathogens it vectors. 2,Information about trophic interactions with other insect herbivores and natural enemies is reviewed. Vine weevils Otiorhynchus sulcatus compromise aphid resistance in some raspberry cultivars, increasing A. idaei abundance by 80%. Parasitoids show mixed success in parasitizing A. idaei, although Aphidius ervi attack rates more than doubled when A. idaei fed on a partially susceptible raspberry cultivar, compared with a resistant variety. These findings are discussed in the context of potential biological control as part of an integrated pest and disease management framework. 3,Amphorophora idaei transmits four known viruses: Black raspberry necrosis virus, Raspberry leaf mottle virus, Raspberry leaf spot virus and Rubus yellow net virus, with A. idaei taking as little as 2 min to transmit some viruses. 4,Existing control strategies, including resistant cultivars, insecticides and eradication of disease from parent plants, are described. In particular, strong selection pressures have resulted in A. idaei overcoming genetic resistance in many raspberry cultivars and most insecticides are now ineffective. 5,Future directions for the sustained control of A. idaei are suggested, taking into consideration the possible effects of climate change and also changes in agronomic practices in U.K. agriculture. [source] | |||||||||||||