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Species Similarity (species + similarity)
Selected AbstractsDistance Decay of Tree Species Similarity in Protected Areas on Terra Firme Forests in Colombian AmazoniaBIOTROPICA, Issue 5 2009Álvaro Duque ABSTRACT In this study, we investigated the pattern of floristic similarity as a function of geographical distances and environmental variability in well-drained uplands (terra firme) in Colombian Amazonia. The study site comprised three National Natural Parks, Tinigua, Chiribiquete, and Amacayacu, located in different geological units that represent a soil fertility gradient linked to parental materials. Differences in species richness between sites were compared using rarefaction analysis. A clear floristic transition appeared in the east,west direction following a soil fertility gradient along the first PCoA axis. In multiple regression analyses based on distance matrices, both geographical distances and geology explained 64 percent of the total floristic variation. Geographical distances alone accounted for 12 percent of variation in floristic similarities among plots, while geology alone accounted for 1 percent, and the joint effect of both explained 51 percent of the floristic variation. The species richness trend supports the existence of a latitudinal corridor southward of the geographical Equator in the Amazon basin, where tree diversity reaches the maximum expected values. A coupled effect of stochastic dispersal limitation and habitat specialization would certainly appear to be an appropriate explanation for tree species turnover in terra firme forests in Colombian Amazonia, strongly emphasizing that competition and neutrality must be supplementary rather than mutually exclusive processes. This result pinpoints the effect of dispersal on floral mixing as an ongoing active process for structuring tree communities in NW Amazonia, and the size of the reserves as a relevant issue to protect rare species from extinction by chance. [source] Impact of Forest Fragmentation on Understory Plant Species Richness in AmazoniaCONSERVATION BIOLOGY, Issue 2 2003Julieta Benítez-Malvido In Central Amazonia, 9 to 19 years after fragmentation, we recorded species richness and net seedling recruitment rate in forest fragments of 1, 10, and 100 ha and in continuous forest. In 1991 all seedlings 5,100 cm tall within permanent 1-m2 plots in fragments and continuous forest were counted and grouped into tree, liana, palm, and herb life-form classes. In 1993 we manually removed all seedlings that were <1 m tall from the permanent plots. Six years and 5 months later ( 1999 ), all new seedlings recruited into the plots were counted, grouped into different life forms, and classified into distinct morphospecies. The species richness of recruited tree, liana, herb, and palm seedlings was lower in forest fragments than in continuous forest, with the 1-ha fragment having the poorest species richness. The total number of recruited individuals was 40% less than that previously present for all life forms, except lianas. Liana recruitment was 7% to 500% higher than the original abundance in the forest fragments and continuous forest. In general, species similarity was higher among fragments than between fragments and continuous forest, with the 1-ha fragment being less similar. Species rank/abundance curves showed that continuous forest species in all life forms tended to disappear in forest fragments, whereas common species in forest fragments were absent from continuous forest. Overall, our results suggest that the life-form composition and structure of the regenerative plant pool in fragments were shifting toward a species-poor seedling community. Losses of understory species diversity, but especially of tree seedlings, threaten the maintenance of rainforest biodiversity and compromise future forest regeneration. Resumen: La fragmentación de las selvas tropicales afecta severamente a a los árboles de gran porte, sin embargo, su efecto sobre otros estadíos y formas de vida de las plantas es poco conocido. En la Amazonia central, de 9 a 19 años después de la fragmentación, se registró la riqueza de especies y la tasa neta de reclutamiento de plántulas en fragmentos de selva de 1, 10, y 100 ha y en selva contínua. En 1991, todas las plántulas de 5,100 cm de altura dentro de cuadrantes permanentes de 1-m2 en los fragmentos y en la selva contínua, fueron contadas y agrupadas en diferentes formas de vida: árboles, lianas, palmas y hierbas. En 1993 se removieron manualmente todas las plántulas <1 m de altura dentro de los cuadrantes. Seis años y cinco meses más tarde (1999) se contaron todas las plántulas reclutadas dentro de los cuadrantes, se agruparon en diferentes formas de vida v se clasificaron en morfoespecies distintivas. La riqueza de especies de plántulas reclutadas en todas las formas de vida fue menor en los fragmentos que en la selva contínua, con el fragmento de 1 ha presentando la menor riqueza de especies. El número total de individuos reclutados fue 40% menor que los previamente presentes para todas las formas de vida, excepto lianas. El reclutamiento de lianas fué de 7 a 500% mayor que la abundancia original en los fragmentos y en la selva contínua. En general la similitud de especies fué mayor entre fragmentos que entre fragmentos y selva contínua, con el fragmento de 1-ha siendo el menos similar. Las curvas de rango/abundancia de especies, mostraron que las especies de selva contínua en todas las formas de vida tendieron a desaparecer de los fragmentos, mientras que las especies comunes en los fragmentos estuvieron ausentes en la selva contínua. En general, nuestros resultados sugieren que la composición de formas de vida y la estructura del banco regenerativo en fragmentos tienden a convertirse en una comunidad de plántulas pobre en especies. La pérdida de diversidad de especies del sotobosque, pero especialmente de plántulas de árboles, amenaza el mantenimiento de la biodiversidad y pone en peligro la regeneración futura de la selva. [source] Ciliate biogeography in Antarctic and Arctic freshwater ecosystems: endemism or global distribution of species?FEMS MICROBIOLOGY ECOLOGY, Issue 2 2007Wolfgang Petz Abstract Ciliate diversity was investigated in situ in freshwater ecosystems of the maritime (South Shetland Islands, mainly Livingston Island, 63°S) and continental Antarctic (Victoria Land, 75°S), and the High Arctic (Svalbard, 79°N). In total, 334 species from 117 genera were identified in both polar regions, i.e. 210 spp. (98 genera) in the Arctic, 120 spp. (73 genera) in the maritime and 59 spp. (41 genera) in the continental Antarctic. Forty-four species (13% of all species) were common to both Arctic and Antarctic freshwater bodies and 19 spp. to both Antarctic areas (12% of all species). Many taxa are cosmopolitans but some, e.g. Stentor and Metopus spp., are not, and over 20% of the taxa found in any one of the three areas are new to science. Cluster analysis revealed that species similarity between different biotopes (soil, moss) within a study area was higher than between similar biotopes in different regions. Distinct differences in the species composition of freshwater and terrestrial communities indicate that most limnetic ciliates are not ubiquitously distributed. These observations and the low congruence in species composition between both polar areas, within Antarctica and between high- and temperate-latitude water bodies, respectively, suggest that long-distance dispersal of limnetic ciliates is restricted and that some species have a limited geographical distribution. [source] Floristic patterns and plant traits of Mediterranean communities in fragmented habitatsJOURNAL OF BIOGEOGRAPHY, Issue 7 2006Guillem Chust Abstract Aim, To contrast floristic spatial patterns and the importance of habitat fragmentation in two plant communities (grassland and scrubland) in the context of ecological succession. We ask whether plant assemblages are affected by habitat fragmentation and, if so, at what spatial scale? Does the relative importance of the niche differentiation and dispersal-limitation mechanisms change throughout secondary succession? Is the dispersal-limitation mechanism related to plant functional traits? Location, A Mediterranean region, the massif of Albera (Spain). Methods, Using a SPOT satellite image to describe the landscape, we tested the effect of habitat fragmentation on species composition, determining the spatial scale of the assemblage response. We then assessed the relative importance of dispersal-related factors (habitat fragmentation and geographical distance) and environmental constraints (climate-related variables) influencing species similarity. We tested the association between dispersal-related factors and plant traits (dispersal mode and life form). Results, In both community types, plant composition was partially affected by the surrounding vegetation. In scrublands, animal-dispersed and woody plants were abundant in landscapes dominated by closed forests, whereas wind-dispersed annual herbs were poorly represented in those landscapes. Scrubby assemblages were more dependent on geographical distance, habitat fragmentation and climate conditions (temperature, rainfall and solar radiation); grasslands were described only by habitat fragmentation and rainfall. Plant traits did not explain variation in spatial structuring of assemblages. Main conclusions, Plant establishment in early Mediterranean communities may be driven primarily by migration from neighbouring established communities, whereas the importance of habitat specialization and community drift increases over time. Plant life forms and dispersal modes did not explain the spatial variation of species distribution, but species richness within the community with differing plant traits was affected by habitat patchiness. [source] Spatial patterns in species,area relationships and species distribution in a West African forest,savanna mosaicJOURNAL OF BIOGEOGRAPHY, Issue 4 2005Thomas Hovestadt Abstract Aim, To investigate the relationship between the slope z of the species,area relationship (SAR) and the intensity of spatial patterns in species number and dissimilarity for woody plants with different modes of seed dispersal. According to island theory we expect, for any given archipelago, steeper slopes and more pronounced spatial patterns for groups of less dispersive species. Location, Ivory Coast, West Africa. Methods, In a West African forest,savanna mosaic we collected presence,absence data for woody plant species in 49 forest islands. The parameters of the SARs were fitted by nonlinear regressions and then compared for plant species aggregated according to their mode of seed dispersal. We used the Mantel test to calculate the intensity of spatial patterns in species number, i.e. residual deviation from SAR, and species dissimilarity. Results, The z -value for bird-dispersed species was lower (0.11) than that for wind-dispersed species (0.27), with mammal-dispersed species taking an intermediate value (0.16). This result suggests that, as a group, bird-dispersed species are better colonizers. The spatial pattern in species number as well as species similarity was more pronounced for bird- compared with wind-dispersed species. Main conclusions, The standard interpretation of the theory of island biogeography claims that shallow slopes in the SAR imply low isolation of islands, i.e. good dispersal abilities of species. The results of our study appear to contradict this statement. The contradiction can eventually be resolved by a more detailed account of the colonization process, i.e. by distinguishing between dispersal and consecutive establishment of populations. [source] Unified QSAR & network-based computational chemistry approach to antimicrobials.JOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 1 2010Abstract In the previous work, we reported a multitarget Quantitative Structure-Activity Relationship (mt-QSAR) model to predict drug activity against different fungal species. This mt-QSAR allowed us to construct a drug,drug multispecies Complex Network (msCN) to investigate drug,drug similarity (González-Díaz and Prado-Prado, J Comput Chem 2008, 29, 656). However, important methodological points remained unclear, such as follows: (1) the accuracy of the methods when applied to other problems; (2) the effect of the distance type used to construct the msCN; (3) how to perform the inverse procedure to study species,species similarity with multidrug resistance CNs (mdrCN); and (4) the implications and necessary steps to perform a substructural Triadic Census Analysis (TCA) of the msCN. To continue the present series with other important problem, we developed here a mt-QSAR model for more than 700 drugs tested in the literature against different parasites (predicting antiparasitic drugs). The data were processed by Linear Discriminate Analysis (LDA) and the model classifies correctly 93.62% (1160 out of 1239 cases) in training. The model validation was carried out by means of external predicting series; the model classified 573 out of 607, that is, 94.4% of cases. Next, we carried out the first comparative study of the topology of six different drug,drug msCNs based on six different distances such as Euclidean, Chebychev, Manhattan, etc. Furthermore, we compared the selected drug,drug msCN and species,species mdsCN with random networks. We also introduced here the inverse methodology to construct species,species msCN based on a mt-QSAR model. Last, we reported the first substructural analysis of drug,drug msCN using Triadic Census Analysis (TCA) algorithm. © 2009 Wiley Periodicals, Inc. J Comput Chem 2010 [source] The 29°N latitudinal line: an important division in the Hengduan Mountains, a biodiversity hotspot in southwest ChinaNORDIC JOURNAL OF BOTANY, Issue 5 2009Da-Cai Zhang This paper aimed to explore the division of the southern and northern Hengduan Mountains based on gradients in species similarity and richness, and to analyze species richness in each sub-region. The Hengduan Mountain region was divided into nine latitudinal belts using one degree of latitude to define the belt after which distribution of seed plants within each latitudinal belt was recorded. Latitudinal patterns of species similarity were measured using the Jaccard similarity index for each pair of adjacent latitudinal belts. Non-metric multidimentional scaling (NMDS) was also used to analyze the similarity in species composition among the nine latitudinal belts. The latitudinal pattern of species similarity and the NMDS ordination both showed a great change in species composition across the 29°N latitudinal line, essentially dividing the Hengduan Mountain region into southern and northern sub-regions. Species richness, shown by the c-value of the species,area power function, and species,area ratio along a latitudinal gradient both showed a sharp decrease across the latitudinal belt from 29°0, to 29°59,N. The southern sub-region occupied 40% of the total area of the Hengduan Mountain region, but contained more than 80% of all the seed plants in the region. The higher species richness and endemism in the southern sub-region showed it to be the core of the Hengduan biodiversity hotspot, a result not unexpected because of the greater extremes of topography and wider diversity of habitats in the southern portion. [source] Connectivity and patch area in a coastal marine landscape: Disentangling their influence on local species richness and compositionAUSTRAL ECOLOGY, Issue 6 2009ANA INÉS BORTHAGARAY Abstract Landscape ecology emerged as a terrestrial discipline to evaluate the effect of spatial configuration of natural systems on ecological patterns. The advances in marine systems have been comparatively scarce perhaps as a consequence of a long-standing view about the greater dispersal potential of marine species and its effect on the spatial homogenization of marine landscapes. Herein we used an intertidal rocky system as a model to analyse the effect of landscape attributes on local species richness and composition. We evaluated the effect of patch area, landscape connectivity and salinity gradient on local species richness of macro-invertebrates, and the effect of geographic distance on species similarity. We sampled 19 rocky patches along the Uruguayan Atlantic coast one time during the spring of 2003. The relative contribution of the variables assessed on specific richness of sessile, mobile and total macrofauna was analysed with a stepwise multiple linear regression. For the mobile macrofaunal richness, we also incorporated the sessile macrofaunal richness as another independent variable. The effect of geographic distance on biological similarity was assessed by a Mantel test. We showed that landscape connectivity, as a descriptor of the average physical isolation of a biological community in the landscape, is an important factor explaining the community species richness for sessile macrofauna, what indirectly increases the mobile macrofaunal richness. The geographic distance between sites was negatively related to species similarity. We suggest that at the landscape scale, connectivity among sites can be important to understand the local structure of marine communities, particularly in rocky intertidal systems. Also the distance-decay of similarity in community composition provides a useful descriptor of how biological composition varies along a physical gradient. Our results contribute to reinforce the view that mesoscale connectivity (101,2 km) in coastal marine landscapes plays a more important role in local community structure than previously assumed. [source] Seedbank phytosociology of the Strandveld Succulent Karoo, South Africa: a pre-mining benchmark survey for rehabilitationLAND DEGRADATION AND DEVELOPMENT, Issue 2 2001A. J. De Villiers Abstract Prior to the mining of heavy minerals, the seedbank of the Strandveld Succulent Karoo was investigated to serve as a benchmark for the future rehabilitation of the area. Seedbank composition and species' abundance were determined with the seedling emergence method. By using the Braun-Blanquet method, five main vegetation units were identified in concordance with results obtained for the standing vegetation. A total of 108 species were recorded in the seedbank, which represents c. 50 per cent of the species recorded in the standing vegetation of the total study area. Seven annual species (3 per cent) were unique to the soil seedbank. On community level, similarity in species composition between the standing vegetation and the soil seedbank ranged between 39·2 per cent and 48·8 per cent, with a similarity of 54·3 per cent for the total study area. Annual and perennial species' similarity in species composition between the standing vegetation and the seed bank totalled 74·8 per cent and 43·1 per cent respectively. Post-mining topsoil replacement as well as seeding and transplanting of selected local species will be essential to revegetate this area. Copyright © 2001 John Wiley & Sons, Ltd. [source] | ||||||||||