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Species Present (species + present)
Kinds of Species Present Selected AbstractsThe Potential for Species Conservation in Tropical Secondary ForestsCONSERVATION BIOLOGY, Issue 6 2009ROBIN L. CHAZDON especialización de hábitat; biodiversidad forestal; bosque secundario; bosque tropical; sucesión Abstract:,In the wake of widespread loss of old-growth forests throughout the tropics, secondary forests will likely play a growing role in the conservation of forest biodiversity. We considered a complex hierarchy of factors that interact in space and time to determine the conservation potential of tropical secondary forests. Beyond the characteristics of local forest patches, spatial and temporal landscape dynamics influence the establishment, species composition, and persistence of secondary forests. Prospects for conservation of old-growth species in secondary forests are maximized in regions where the ratio of secondary to old-growth forest area is relatively low, older secondary forests have persisted, anthropogenic disturbance after abandonment is relatively low, seed-dispersing fauna are present, and old-growth forests are close to abandoned sites. The conservation value of a secondary forest is expected to increase over time, as species arriving from remaining old-growth forest patches accumulate. Many studies are poorly replicated, which limits robust assessments of the number and abundance of old-growth species present in secondary forests. Older secondary forests are not often studied and few long-term studies are conducted in secondary forests. Available data indicate that both old-growth and second-growth forests are important to the persistence of forest species in tropical, human-modified landscapes. Resumen:,A raíz de la pérdida generalizada de los bosques maduros en el trópico, los bosques secundarios probablemente jugarán un mayor papel en la conservación de la biodiversidad forestal. Consideramos una jerarquía compleja de factores que interactúan en el espacio y tiempo para determinar el potencial de conservación de los bosques tropicales secundarios. Más allá de las características de los fragmentos de bosque locales, la dinámica espacial y temporal del paisaje influye en el establecimiento, la composición de especies y la persistencia de bosques secundarios. Los prospectos para la conservación de especies primarias en los bosques secundarios se maximizan en regiones donde la proporción de superficie de bosque maduro-bosque secundario es relativamente baja, los bosques secundarios más viejos han persistido, la perturbación antropogénica después del abandono es relativamente baja, hay presencia de fauna dispersora de semillas y donde hay bosques primarios cerca de sitios abandonados. Se espera que el valor de conservación de un bosque secundario incremente en el tiempo, a medida que se acumulan especies provenientes de los fragmentos de bosque primario remanentes. Muchos estudios están pobremente replicados, lo que impide evaluaciones robustas del número y abundancia de especies primarias presentes en bosques secundarios. Los bosques secundarios más viejos generalmente no son estudiados y son pocos los estudios a largo plazo en bosques secundarios. Los datos disponibles indican que tanto los bosques primarios como los secundarios son importantes para la persistencia de especies forestales en paisajes tropicales modificados por humanos. [source] Heavy Extinctions of Forest Avifauna in Singapore: Lessons for Biodiversity Conservation in Southeast AsiaCONSERVATION BIOLOGY, Issue 6 2000Marjorie Castelletta In Southeast Asia, Singapore, a newly developing country, has had 95% of its native lowland rainforest cleared. Most of the rainforest was lost in the mid- to late-nineteenth century. We compared avifauna checklists from 1923, 1949, and 1998 to determine the extent of extinctions between 1923 and 1998 in Singapore. Of 203 diurnal bird species, 65 were extirpated in Singapore in the past 75 years. Four of these species were nonforest- dependent species, whereas 61 (94%) were forest bird species dependent on the primary or old secondary forest to survive. Twenty-six forest bird species became extinct between 1923 and 1949, whereas 35 forest species disappeared after 1949. We compared the body lengths, feeding guilds, and vertical feeding zones between extinct and extant forest bird species to determine whether extinction patterns were dependent on these characteristics. Larger forest bird species went extinct between 1923 and 1949. Body sizes, however, did not affect the loss of forest bird species between 1949 and 1998. We observed high losses of insectivorous birds; the insectivore-carnivore and insectivore-granivore guilds lost> 80% of the species present in 1923. The highest losses were among birds that fed in the canopy. None of the forest bird species are currently common (>100 individuals/species) within Singapore. Our study shows that more than half the forest avifauna became locally extinct after extensive deforestation. Based on this fact, the countries within Southeast Asia should reconsider their heavy deforestation practices. Resumen: Las consecuencias de la tala rápida del bosque lluvioso sobre la avifauna nativa son poco conocidas. En Asia sudoriental, Singapur, un país en desarrollo, un 95% de su bosque nativo de tierras bajas ha sido talado. La mayoríia del bosque se perdió entre mediados y finales del siglo diecinueve. En este trabajo comparamos las listas de avifauna de 1923, 1949 y 1998 para determinar la extensión de las extinciones en Singapur entre 1923 y 1998. Sesenta y cinco de las 203 especies diurnas de aves fueron extirpadas de Singapur en los últimos 75 años. Cuatro de estas especies fueron especies no dependientes del bosque, mientras que 61 (94%) fueron especies de aves del bosque (especies que dependen del bosque primario o secundario viejo para sobrevivir). Veintiséis de las especies de aves del bosque se extinguieron entre 1923 y 1949, mientras que 35 especies del bosque desaparecieron después de 1949. Comparamos las longitudes del cuerpo, los gremios de alimentación y las zonas de alimentación vertical entre especies de aves de bosque extintas y existentes para determinar si los patrones de extinción fueron dependientes de estas características. Las especies de aves grandes del bosque se extinguieron entre 1923 y 1949. Sin embargo, el tamaño del cuerpo no afectó la pérdida de especies del bosque entre 1949 y 1998. Observamos altas pérdidas de aves insectívoras; los gremios de insectívoros-carnívoros e insectívoros-granívoros perdieron> 80% de las especies que estaban presentes en 1923. Los números más altos de pérdidas fueron de aves que se alimentan en el dosel. Ninguna de las especies de aves del bosque es común en la actualidad (>100 individuos/especie) dentro de Singapur. Nuestro estudio muestra que más de la mitad de la avifauna del bosque se ha extinguido localmente después de una deforestación extensiva. Con base en este hecho, los países dentro de Asia Sudoriental deberían reconsiderar sus prácticas de intensa deforestación. [source] Contamination by nickel, copper and zinc during the handling of euro coinsCONTACT DERMATITIS, Issue 4 2003Paul-Guy Fournier The introduction of the euro has revived interest in the risk of nickel allergy due to the handling of coins. In the present work, the transfer of metallic contamination during the manipulation of coins is examined by means of leaching experiments and manipulation tests. It is shown that pre-existing metallic species present on the surface of the coins are the major source of contamination during manipulation, and that friction inherent to everyday usage contributes predominantly to their transfer to the hands. The comparison of coins as to their relative risks of metal contamination should therefore rely on tests that simulate the friction inherent in everyday human handling. Carrying out such tests with the newly issued 1, and 2, pieces, we find, contrary to long-term leaching measurements, that the euros release less nickel than previously circulated pure-nickel coins, but that this decrease is less pronounced than might have been hoped for on the basis of their surface composition. When the coins are rubbed to a shiny polish before manipulation, contamination of the fingers is reduced by more than a factor of 10. A comparison of coins used in France indicates that the introduction of the common currency has led to a fourfold reduction in contamination by nickel, while causing a 45% increase in contamination by copper. [source] Comparing agglomerative clustering and three weed classification frameworks to assess the invasiveness of alien species across spatial scalesDIVERSITY AND DISTRIBUTIONS, Issue 6 2006Roger A. Lawes ABSTRACT To prioritize weed management at the catchment scale, information is required on the species present, their relatively frequency, abundance, and likely spread and impact. The objective of this study was to classify the invasiveness of alien species that have invaded the Upper Burdekin Catchment in Queensland, Australia, at three spatial scales. A combination of three published weed classification frameworks and multivariate techniques were employed to classify species based on their frequency and cover at a range of spatial scales. We surveyed the Upper Burdekin Catchment for alien species, and for each species determined the following distribution indices , site frequency, total cover, transect frequency per site frequency and quadrat frequency per site frequency, cover per quadrat when present, cover per transect when present, and cover per site when present. These indices capture the effect of species abundance and frequency between sites (site frequency and total cover), within sites (transect frequency per site and cover per transect when present), and within transects (quadrat frequency per site frequency and cover per site). They were used to classify the species into seven groups using a hierarchical cluster analysis. The relationship between the indices was explored to determine how effective the small scale, site-specific indices were at predicting the broader, landscape-scale patterns. Strong correlations were observed between transect frequency per site and frequency (r2 = 0.89) and cover per transect when present and total cover (r2 = 0.62). This suggests that if a weed is abundant at the site level, it has the potential to occupy large areas of the catchment. The species groupings derived from the application of the three published weed classification frameworks were compared graphically to the groupings derived from the cluster analysis. One of the frameworks classified species into three groups. The other two frameworks classified species into four groups. There was a high degree of subjectivity in applying the frameworks to the survey data. Some of the data were of no relevance to the classification frameworks and were therefore ignored. We suggest that the weed classification frameworks should be used in conjunction with existing multivariate techniques to ensure that classifications capture important natural variations in observed data that may reflect invasion processes. The combined use of the frameworks and multivariate techniques enabled us to aggregate species into categories appropriate for management. [source] The effect of short fire cycles on the cover and density of understorey sprouting species in South African mountain fynbosDIVERSITY AND DISTRIBUTIONS, Issue 5 2000J. H. J. Vlok Abstract. Two South African mountain fynbos sites were studied to determine the effect of short fire cycles on the cover and density of understorey sprouting species and their subsequent effect on plant-species richness. Frequent fires (4,6 years between burns) increased the cover of sprouting species by 32% when compared to an adjacent site where the penultimate fire was 28 years previously. There was little or no effect of fire frequency on the densities of understorey sprouters; however, individuals were larger at sites with short fire cycles. The response of individual species of sprouters was variable with one species, Hypodiscus striatus, showing no response to fire frequency. The impact of sprouting species on the species richness of the plant community was great. The mean number of species recorded in quadrats with a high cover of sprouters was 60% lower in comparison to quadrats with low covers or under the burned skeletons of overstorey proteas. The effect of sprouters was consistent for all functional groups of species (i.e. sprouters, non-sprouters, short-lived and long-lived species), in each case reducing the number of species present. [source] Species richness of marine Bryozoa in the continental shelf and slope off Argentina (south-west Atlantic)DIVERSITY AND DISTRIBUTIONS, Issue 1 2000Juan López Gappa Abstract., A total of 246 marine bryozoan species was recorded within an area of the south-west Atlantic between 35° and 56°S, and between the coast of Argentina and 50°W. The distribution pattern of benthic stations surveyed during the most important cruises in the area shows that the sampling effort has been biased towards southern shelf areas off Santa Cruz and Tierra del Fuego, as well as around the Malvinas (Falkland) islands. The littoral zone, Patagonian gulfs and the continental shelf off Chubut, Río Negro and Buenos Aires state received less attention, and should be surveyed more intensively in the future. Only 2% of the species can be regarded as non-indigenous, all of them inhabiting biofouling communities in harbour environments. With the exception of some thoroughly surveyed localities, the number of species recorded for different areas of the coast, shelf and slope is estimated to be just a small fraction of the actual number of species present. A distinct diversity gradient was found, with species-rich stations located only in the southern shelf. Highest diversity occurred in shelf areas dominated by coarse sediments, and along a high-productivity shelf-break front. A remarkable decrease in species richness was found in inner and middle shelf areas off Chubut, Río Negro and Buenos Aires state. This pattern may be related to the Pacific origin of the Magellanic fauna, since the diversity of bryozoans is higher in the Pacific than in the Atlantic Ocean. The trend of species richness is, however, overemphasized by the fact that the least diverse faunistic assemblage occurs in areas where surveys have been relatively less frequent. An up-to-date checklist of species recorded for the study area is included. [source] Phytogeographical evidence for post-glacial dispersal limitation of European beech forest speciesECOGRAPHY, Issue 6 2009Wolfgang Willner The post-glacial migration of European beech Fagus sylvatica has been addressed by many studies using either genetic or fossil data or a combination of both. In contrast to this, only little is known about the migration history of beech forest understorey species. In a review of phytosociological literature, we identified 110 plant species which are closely associated with beech forest. We divided the distribution range of European beech forests into 40 geographical regions, and the presence or absence of each species was recorded for each region. We compared overall species numbers per region and numbers of narrow-range species (species present in <10 regions). A multiple regression model was used to test for the explanatory value of three potential diversity controls: range in elevation, soil type diversity, and distance to the nearest potential refuge area. A hierarchical cluster analysis of the narrow-range species was performed. The frequency of range sizes shows a U-shaped distribution, with 42 species occurring in <10 regions. The highest number of beech forest species is found in the southern Alps and adjacent regions, and species numbers decrease with increasing distance from these regions. With only narrow-range species taken into consideration, secondary maxima are found in Spain, the southern Apennines, the Carpathians, and Greece. Distance to the nearest potential refuge area is the strongest predictor of beech forest species richness, while altitudinal range and soil type diversity had little or no predictive value. The clusters of narrow-range species are in good concordance with the glacial refuge areas of beech and other temperate tree species as estimated in recent studies. These findings support the hypothesis that the distribution of many beech forest species is limited by post-glacial dispersal rather than by their environmental requirements. [source] Scale dependence of diversity measures in a leaf-litter ant assemblageECOGRAPHY, Issue 2 2004Maurice Leponce A reliable characterization of community diversity and composition, necessary to allow inter-site comparisons and to monitor changes, is especially difficult to reach in speciose invertebrate communities. Spatial components of the sampling design (sampling interval, extent and grain) as well as temporal variations of species density affect the measures of diversity (species richness S, Buzas and Gibson's evenness E and Shannon's heterogeneity H). Our aim was to document the small-scale spatial distribution of leaf litter ants in a subtropical dry forest of the Argentinian Chaco and analyze how the community characterization was best achieved with a minimal sampling effort. The work was based on the recent standardized protocol for collecting ants of the leaf litter ("A.L.L.": 20 samples at intervals of 10 m). To evaluate the consistency of the sampling method in time and space, the selected site was first subject to a preliminary transect, then submitted after a 9-month interval to an 8-fold oversampling campaign (160 samples at interval of 1.25 m). Leaf litter ants were extracted from elementary 1 m2 quadrats with Winkler apparatus. An increase in the number of samples collected increased S and decreased E but did not affect much H. The sampling interval and extent did not affect S and H beyond a distance of 10 m between samples. An increase of the sampling grain had a similar effect on S than a corresponding increase of the number of samples collected, but caused a proportionaly greater increase of H. The density of species m,2 varied twofold after a 9-month interval; the effect on S could only be partially corrected by rarefaction. The measure of species numerical dominance was little affected by the season. A single standardized A.L.L. transect with Winkler samples collected <45% of the species present in the assemblage. All frequent species were included but their relative frequency was not always representative. A log series distribution of species occurrences was oberved. Fisher's , and Shannon's H were the most appropriate diversity indexes. The former was useful to rarefy or abundify S and the latter was robust against sample size effects. Both parametric and Soberón and Llorente extrapolation methods outperformed non-parametric methods and yielded a fair estimate of total species richness along the transect, a minimum value of S for the habitat sampled. [source] On the estimation of species richness based on the accumulation of previously unrecorded speciesECOGRAPHY, Issue 1 2002Emmanuelle Cam Estimation of species richness of local communities has become an important topic in community ecology and monitoring. Investigators can seldom enumerate all the species present in the area of interest during sampling sessions. If the location of interest is sampled repeatedly within a short time period, the number of new species recorded is typically largest in the initial sample and decreases as sampling proceeds, but new species may be detected if sampling sessions are added. The question is how to estimate the total number of species. The data collected by sampling the area of interest repeatedly can be used to build species accumulation curves: the cumulative number of species recorded as a function of the number of sampling sessions (which we refer to as "species accumulation data"). A classic approach used to compute total species richness is to fit curves to the data on species accumulation with sampling effort. This approach does not rest on direct estimation of the probability of detecting species during sampling sessions and has no underlying basis regarding the sampling process that gave rise to the data. Here we recommend a probabilistic, nonparametric estimator for species richness for use with species accumulation data. We use estimators of population size that were developed for capture-recapture data, but that can be used to estimate the size of species assemblages using species accumulation data. Models of detection probability account for the underlying sampling process. They permit variation in detection probability among species. We illustrate this approach using data from the North American Breeding Bird Survey (BBS). We describe other situations where species accumulation data are collected under different designs (e.g., over longer periods of time, or over spatial replicates) and that lend themselves to of use capture-recapture models for estimating the size of the community of interest. We discuss the assumptions and interpretations corresponding to each situation. [source] Genetic divergence and ecological specialisation of seed weevils (Exapion spp.) on gorses (Ulex spp.)ECOLOGICAL ENTOMOLOGY, Issue 3 2008MYRIAM BARAT Abstract 1.,Reproductive isolation of sympatric populations may result from divergent selection of populations in different environments, and lead to ecological specialisation. In Brittany (France), the gorse Ulex europaeus (Fabaceae, Genisteae), may be encountered in sympatry with one of the two other gorse species present: U. gallii and U. minor. A recent study based on morphological identification of seed predators of gorse has shown that two weevil species (Curculionoidea, Apionidae) infest gorse pods at different seasons and have different host ranges: Exapion ulicis infests U. europaeus in spring, whereas E. lemovicinum infests U. gallii and U. minor in autumn. Weevil populations may thus have diverged in sympatry. 2.,As morphological identification of weevils is often difficult and some of the characters used may exhibit individual or environmental variation, mitochondrial and nuclear sequences of weevils collected within pods of the three gorse species in 10 populations of Brittany were used to reconstruct their phylogeny. 3.,The results reveal that species differentiation based on morphological characters is confirmed by the two molecular data sets, showing that E. ulicis and E. lemovicinum are distinct species, and suggesting the absence of host races. Finally, E. ulicis was able to use U. gallii and U. minor pods in spring in some years in some populations, which appeared to depend on the availability of pods present during its reproductive period. 4.,Divergence between E. ulicis and E. lemovicinum may have resulted from temporal isolation of reproductive periods of weevil populations followed by specialisation of insects to host phenology. [source] Procedure for separating the selection effect from other effects in diversity,productivity relationshipECOLOGY LETTERS, Issue 6 2001paèková In a greenhouse pot experiment we cultivated six meadow species in a replacement series design. The plants were grown at two sowing densities in monocultures and all possible species combinations. Our aim was to separate the selection effect from other diversity effects. This distinction is based on the notion that true overyielding is not a consequence of the selection effect. We suggest a hierarchical procedure, which is based on a repeated division of samples into the pots with the most productive species present and missing. Overyielding can be then demonstrated by a positive dependence of productivity on species richness in the subsets with the most productive species present. Although we found a strong dependence of biomass on species richness in the entire data set, the hierarchical method revealed no evidence of overyielding. Above-ground biomass in a monoculture was a good predictor of species success in a species mix. [source] Evaluation of carrier ampholyte-based capillary electrophoresis for separation of peptides and peptide mimetics,ELECTROPHORESIS, Issue 18 2008an Koval Abstract Carrier ampholyte-based capillary electrophoresis (CABCE) has recently been introduced as an alternative to CE (CZE) in the classical buffers. In this study, isoelectric BGEs were obtained by fractionation of Servalyt pH 4,9 carrier ampholytes to cuts of typical width of 0.2 pH unit. CABCE feasibility was examined on a series of insect oostatic peptides, i.e. proline-rich di- to decapeptides, and phosphinic pseudopeptides , tetrapeptide mimetics synthesized as a mixture of four diastereomers having the ,P(O)(OH),CH2, moiety embedded into the peptide backbone. With identical selectivity, the separation efficiency of CABCE proved to be as good as classical CE for the insect oostatic peptides and better for diastereomers of the phosphinic pseudopeptides. In addition, despite the numerous species present in the narrow pH cuts of carrier ampholytes, CABCE seems to be free of system zones that could hamper the analysis. Peak symmetry was good for moderately to low mobile peptides, whereas some peak distortion due to electromigration dispersion, was observed for short peptides of rather high mobility. [source] Estimation of microbial cover distributions at Mammoth Hot Springs using a multiple clone library resampling methodENVIRONMENTAL MICROBIOLOGY, Issue 7 2006Héctor García Martín Summary We propose the use of cover as a quick, low-resolution proxy for the abundance of microbial species, which reduces polymerase chain reaction bias. We showcase this concept in a computation that uses clone library information from travertine-forming hot springs in Yellowstone National Park to provide estimates of relative covers at different locations within the spring system. Samples were used from two media: the water column and the travertine substrate. The cover distribution is found to approximate a power law for samples within the water column. Significant commonality of species with the highest cover is observed in the water column for all locations, but not for species present in the substrate at different locations or between media at the same location. [source] Uncertainty analysis of single-concentration exposure data for risk assessment,introducing the species effect distribution approachENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 11 2006Janeck J. Scott-fordsmand Abstract In recent years, the inclusion of uncertainty analysis in risk assessment has been much debated. One pertinent issue is the translation of the effects observed with a limited number of test species to a general protection level for most or all species present in the environment. In a number of cases, toxicity data may consist of data from tests employing only a control and one treatment. Given that more species (or processes) have been tested with the same treatment, the treatment can be considered as fixed, and the effect level of the individual species (or processes) can be considered as variable. The distribution of effects can be viewed as a species effect distribution for that treatment. The distribution will represent all organisms and may be used to predict the maximum impact on any fraction of all organisms (e.g., 95% of all species). Hence, it is possible to predict the maximum effect level, with a selected certainty, for a given fraction of all species. [source] Responses of biofilms to combined nutrient and metal exposureENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 3 2002Núria Ivorra Abstract Numerous studies have reported marked sensitivities of diatom species to phosphate and organic pollution but have ignored interactions with other common contaminants. The aim of the present study was to investigate the single and joint effects of increased phosphate and metal (cadmium, zinc) concentrations on benthic diatom communities. Microalgal biofilms from a relatively unpolluted stream were exposed in the laboratory to Zn, Cd, and P, separately and in combination, in concentrations found at a polluted stream in the same catchment. The Zn concentration reduced algal growth in biofilms more than the Cd concentration. Phosphate compensated for the single effect of each metal but not for their combined effects. Diatom community changes were evaluated using water quality indices based on the empirical sensitivities of taxa to nutrients (TDI) and organic pollution (%PTV). Phosphate exposure resulted in an increase of the eutrophy rank and presumed pollution-tolerant taxa. In contrast, exposure to Zn, Zn + Cd, and Zn + Cd + P caused a marked reduction of the TDI and %PTV community values. The successional trends in the laboratory matched the observed differences in microphyte communities in the reference and polluted river stations. However, the autoecology of the species present also revealed that the resulting composition of diatom communities cannot be attributed solely to the direct toxic effects of metal and nutrients and their interaction. Observed changes in the relative abundance of species are also determined by their growth form and microdistribution in biofilms. [source] Complexes of Yb3+ with EDTA and CDTA , Molecular and Electronic StructureEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 19 2008Janicki Abstract Two Yb3+ compounds, [C(NH2)3]2[Yb(EDTA)(H2O)2]ClO4·6H2O and [C(NH2)3][Yb(CDTA)(H2O)2]·4H2O, where EDTA is the ethylenediaminetetraacetate anion and CDTA is the trans -1,2-diaminecyclohexane- N,N,N,,N, -tetraacetate anion, were obtained and their crystal structures and spectroscopic properties were determined. In both compounds, the coordination geometries of the eight-coordinate Yb3+ ion are very similar. In each case, the inner sphere of the metal ion consists of four carboxyl oxygen atoms, two nitrogen atoms and two water molecules. The complexes were characterized by UV/Vis/NIR absorption at different temperatures and IR spectroscopy. The spectroscopic results revealed high sensitivity of the electronic 4f13 configuration upon minor changes in the coordination geometry around the Yb3+ ion. These data also demonstrate that species present in solutions of Yb3+,EDTA are similar to those found in the crystal, whereas in solutions of Yb3+,CDTA an equilibrium between at least two different forms exists. For the Yb3+,EDTA complex in solution and in the crystalline state, a charge-transfer transition was detected. Theoretical calculations revealed its complicated (Yb , ligand and ligand , Yb) character.(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2008) [source] Aminoethyl-Functionalized Cyclopentadienyliridium Complexes: Photochemical C,H Activation and Carbonylation of CycloalkanesEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 8 2006Pek Ke Chan Abstract The photochemical C,H activation of cycloalkanes by aminoethyl-functionalized cyclopentadienyliridium complexes proceeds in a broadly similar way to that for their unfunctionalized analogues. In a carbon monoxide atmosphere, there is evidence that carbonylation to form the carboxaldehyde occurred with both systems. In situ infrared spectroscopic studies on these reactions allow the identification of several species present in low concentrations in the reaction mixture. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2006) [source] Gene expression and dental enamel structure in developing mouse incisorEUROPEAN JOURNAL OF ORAL SCIENCES, Issue 2 2010Amer Sehic Sehic A, Risnes S, Khan Q-E-S, Khuu C, Osmundsen H. Gene expression and dental enamel structure in developing mouse incisor. Eur J Oral Sci 2010; 118: 118,130. © 2010 The Authors. Journal compilation © 2010 Eur J Oral Sci At the mouse incisor tip the initially differentiated ameloblasts produce a thin, prism-free enamel, while further apically, in the immediate adjacent segment, the enamel thickness increases and the four-layered enamel of mouse incisor is formed. Comparative gene-expression profiling was carried out on RNA isolated from these two segments of incisor tooth germs at embryonic day (E)17.5 and at postnatal days (P)0, 1, 2, and 10 using microarrays to measure messenger RNA (mRNA) and microRNA (miRNA) species present in the segments. Validation of expression data was achieved using real-time reverse transcription,polymerase chain reaction (RT-PCR) and western blotting. Bioinformatic data suggested enhanced cellular apoptosis in the incisal tip segment, which, together with diminished expression of the Amelx and Enam genes, may contribute to the production of the thin enamel seen in this tooth segment. For genes exhibiting higher levels of expression in the adjacent segment where complex enamel is being formed, bioinformatic analysis suggested significant associations with cellular functions involving the actin cytoskeleton, cellular development, morphology, and movement. This is suggested to reflect that ameloblasts with Tomes' process are being organized in transverse rows, facilitating the transverse movement that results in prism decussation in the inner enamel of the adjacent segment. Bioinformatic analysis of miRNA expression data lends support to these suggestions. [source] Humus forms in two secondary semi-evergreen tropical forestsEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 1 2003G. Loranger Summary The dynamics and function of humus forms in tropical forests are still poorly understood. Humus profiles in two secondary semi-evergreen woodlands in Guadeloupe (French West Indies) were analysed micromorphologically. The humus forms are described under the canopy of five dominant tree species at two sites: under Pisonia subcordata and Bursera simaruba in a secondary forest on a Leptosol (Rendzina), and under Swietenia macrophylla, Tabebuia heterophylla and B. simaruba in a plantation on a calcareous Vertisol. In the secondary forest, two distinct humus forms were observed. A calcareous Amphimull, characterized by an OH horizon comprising the faecal pellets of millipedes, is formed under the canopy of P. subcordata, which produces a litter that is rich in nitrogen. A Dysmull with a thick root mat (OFRh horizon) develops under the canopy of B. simaruba, which produces a litter rich in lignin and phenol that is consumed slowly by the soil fauna. In the plantation on the Vertisol, the activity of the endoanecic earthworm Polypheretima elongata has led to the rapid disappearance of litter and the mixing of organic and mineral material. The humus form is a Eumull and is similar under all three tree species present. [source] EVOLUTION OF SCAPULA SIZE AND SHAPE IN DIDELPHID MARSUPIALS (DIDELPHIMORPHIA: DIDELPHIDAE)EVOLUTION, Issue 9 2009Diego Astúa The New World family Didelphidae, the basal lineage within marsupials, is commonly viewed as morphologically conservative, yet includes aquatic, terrestrial, scansorial, and arboreal species. Here, I quantitatively estimated the existing variability in size and shape of the Didelphidae scapula (1076 specimens from 56 species) using geometric morphometrics, and compared size and shape differences to evolutionary and ecologic distances. I found considerable variation in the scapula morphology, most of it related to size differences between species. This results in morphologic divergence between different locomotor habits in larger species (resulting from increased mechanical loads), but most smaller species present similarly shaped scapulae. The only exceptions are the water opossum and the short-tailed opossums, and the functional explanations for these differences remain unclear. Scapula size and shape were mapped onto a molecular phylogeny for 32 selected taxa and ancestral size and shapes were reconstructed using squared-changed parsimony. Results indicate that the Didelphidae evolved from a medium- to small-sized ancestor with a generalized scapula, slightly more similar to arboreal ones, but strikingly different from big-bodied present arboreal species, suggesting that the ancestral Didelphidae was a small scansorial animal with no particular adaptations for arboreal or terrestrial habits, and these specializations evolved only in larger-bodied clades. [source] TAIL SHEDDING IN ISLAND LIZARDS [LACERTIDAE, REPTILIA]: DECLINE OF ANTIPREDATOR DEFENSES IN RELAXED PREDATION ENVIRONMENTSEVOLUTION, Issue 5 2009Panayiotis Pafilis The ability of an animal to shed its tail is a widespread antipredator strategy among lizards. The degree of expression of this defense is expected to be shaped by prevailing environmental conditions including local predation pressure. We test these hypotheses by comparing several aspects of caudal autotomy in 15 Mediterranean lizard taxa existing across a swath of mainland and island localities that differ in the number and identity of predator species present. Autotomic ease varied substantially among the study populations, in a pattern that is best explained by the presence of vipers. Neither insularity nor the presence of other types of predators explain the observed autotomy rates. Final concentration of accumulated tail muscle lactate and duration of movement of a shed tail, two traits that were previously thought to relate to predation pressure, are in general not shaped by either predator diversity or insularity. Under conditions of relaxed predation selection, an uncoupling of different aspects of caudal autotomy exists, with some elements (ease of autotomy) declining faster than others (duration of movement, lactate concentration). We compared rates of shed tails in the field against rates of laboratory autotomies conducted under standardized conditions and found very high correlation values (r > 0.96). This suggests that field autotomy rates, rather than being a metric of predatory attacks, merely reflect the innate predisposition of a taxon to shed its tail. [source] Comparison of frog assemblages between urban and non-urban habitats in the upper Blue Mountains of AustraliaFRESHWATER BIOLOGY, Issue 12 2008ALAN LANE Summary 1. World wide, and in Australia, many frog populations have declined over the last two decades. The present study was undertaken to determine whether urbanization has affected frog diversity and abundance. 2. Five urban sites were paired with non-urban sites. Urban sites were in Katoomba and Blackheath, and were subject to physical environmental disturbance and impacted by storm water pollution due to urban runoff. Non-urban sites were in the Blue Mountains National Park and were effectively subject to no human impact. 3. Water quality at urban sites was typical of sites polluted with sewage, while non-urban sites exhibited water quality typical of ,pristine' natural bushland streams. 4. Six species were found at urban sites (Litoria peronii, Litoria dentata, Litoria verreauxii, Limnodynastes dumerilii, Limnodynastes peronii, Crinia signifera), with up to four species present at a site. Only one species (C. signifera) was recorded at non-urban sites, and frogs were absent from most non-urban sites. 5. The situation in non-urban sites mirrors the trend of decline observed in other montane regions. Surprisingly, frog abundance and diversity were higher in urban habitats, running counter to this trend. 6. We hypothesize that the salts, detergents and other chemicals in urban wastewaters provide frogs with a level of protection against disease, particularly chytridiomycosis. [source] Life-history strategies in freshwater macroinvertebratesFRESHWATER BIOLOGY, Issue 9 2008WILCO C. E. P. VERBERK Summary 1Explaining spatial and temporal differences in species assemblages is a central aim of ecology. It requires a sound understanding of the causal mechanisms underlying the relationship of species with their environment. A species trait is widely acknowledged to be the key that links pattern and process, although the enormous variety of traits hampers generalization about which combination of traits are adaptive in a particular environment. 2In three steps, we used species traits to match species and environment, and chose lentic freshwater ecosystems to illustrate our approach. We first identified key environmental factors and selected the species traits that enable the organism to deal with them. Secondly, we investigated how investments in these traits are related (e.g. through trade-offs). Thirdly, we outlined 13 life-history strategies, based on biological species traits, their interrelations known from life-history theory and their functional implications. 3Species traits and environmental conditions are connected through life-history strategies, with different strategies representing different solutions to particular ecological problems. In addition, strategies may present an integrated response to the environment as they are based on many different traits and their interrelationships. The presence and abundance of (species exhibiting) different life-history strategies in a location may therefore give direct information about how a particular environment is experienced by the species present. 4Life-history strategies can be used to (i) explain differences in species assemblages either between locations or in different periods; (ii) compare waterbodies separated by large geographical distances, which may comprise different regional species pools or span species distribution areas and (iii) reduce often very complex, biodiverse assemblages into a few meaningful, easily interpretable relationships. [source] Functional biotic homogenization of bird communities in disturbed landscapesGLOBAL ECOLOGY, Issue 2 2008Vincent Devictor ABSTRACT Aim, Worldwide, functional homogenization is now considered to be one of the most prominent forms of biotic impoverishment induced by current global changes. Yet this process has hardly been quantified on a large scale through simple indices, and the connection between landscape disturbance and functional homogenization has hardly been established. Here we test whether changes in land use and landscape fragmentation are associated with functional homogenization of bird communities at a national scale. Location, France. Methods, We estimated functional homogenization of a community as the average specialization of the species present in that community. We studied the spatial variation of this community specialization index (CSI) using 1028 replicates from the French Breeding Bird Survey along spatial gradients of landscape fragmentation and recent landscape disturbance, measured independently, and accounting for spatial autocorrelation. Results, The CSI was very sensitive to both measures of environmental degradation: on average, 23% of the difference in the CSI values between two sample sites was attributed to the difference in fragmentation and the disturbance between sites. This negative correlation between CSI and sources of landscape degradation was consistent over various habitats and biogeographical zones. Main conclusions, We demonstrate that the functional homogenization of bird communities is strongly positively correlated to landscape disturbance and fragmentation. We suggest that the CSI is particularly effective for measuring functional homogenization on both local and global scales for any sort of organism and with abundance or presence,absence data. [source] Patterns of ant species richness along elevational gradients in an arid ecosystemGLOBAL ECOLOGY, Issue 2 2003Nathan J. Sanders ABSTRACT Aim In this study, we examine patterns of local and regional ant species richness along three elevational gradients in an arid ecosystem. In addition, we test the hypothesis that changes in ant species richness with elevation are related to elevation-dependent changes in climate and available area. Location Spring Mountains, Nevada, U.S.A. Methods We used pitfall traps placed at each 100-m elevational band in three canyons in the Spring Mountains. We compiled climate data from 68 nearby weather stations. We used multiple regression analysis to examine the effects of annual precipitation, average July precipitation, and maximum and minimum July temperature on ant species richness at each elevational band. Results We found that patterns of local ant species richness differed among the three gradients we sampled. Ant species richness increased linearly with elevation along two transects and peaked at mid-elevation along a third transect. This suggests that patterns of species richness based on data from single transects may not generalize to larger spatial scales. Cluster analysis of community similarity revealed a high-elevation species assemblage largely distinct from that of lower elevations. Major changes in the identity of ant species present along elevational gradients tended to coincide with changes in the dominant vegetation. Regional species richness, defined here as the total number of unique species within an elevational band in all three gradients combined, tended to increase with increasing elevation. Available area decreased with increasing elevation. Area was therefore correlated negatively with ant species richness and did not explain elevational patterns of ant species richness in the Spring Mountains. Mean July maximum and minimum temperature, July precipitation and annual precipitation combined to explain 80% of the variation in ant species richness. Main conclusions Our results suggest that in arid ecosystems, species richness for some taxa may be highest at high elevations, where lower temperatures and higher precipitation may support higher levels of primary production and cause lower levels of physiological stress. [source] Consequences for biodiversity of reducing inputs to upland temperate pastures: effects on beetles (Coleoptera) of cessation of nitrogen fertilizer application and reductions in stocking rates of sheepGRASS & FORAGE SCIENCE, Issue 2 2004P. Dennis Abstract Current policies for upland pasture management in the UK encourage the integration of environmental objectives with livestock production through extensification of grazing systems. This study tested the hypothesis that a greater sward height in the summer would increase the diversity and abundance of grassland beetles (Coleoptera) as has been demonstrated for insects of indigenous grasslands. The hypothesis was tested with an experiment on an upland sheep pasture in mid-Wales. Experimental treatments received different nitrogen fertilizer inputs (0 or 50 kg ha,1), sheep stocking densities (12 or 9 ewes ha,1) and average sward heights in summer were constrained to 3·5 or 5·5 cm by conserving surplus grass for silage in subplots. Five treatments, replicated in three randomized blocks, combined the two stocking densities and two sward heights without nitrogen fertilizer inputs, with the fifth combining the higher stocking density, shortest sward height and the nitrogen fertilizer input. Beetles were sampled with twelve pitfall traps in each of the fifteen plots from June to September in 1993 and 1995. In years 1 (1993) and 3 (1995) of the experiment, more Coleoptera species occurred in the tall sward (an average of nine species in addition to the forty-one species present in the sward with the conventional sward height). Continuously grazed as opposed to ensiled subplots supported more beetle species but fewer individuals. Species composition of ground (Carabidae) and rove (Staphylinidae) beetles varied between treatments more than the arithmetic differences in species number. The experimental results supported the hypothesis but the benefits of taller swards to species diversity were small in the sown pastures of the study compared with indigenous upland grasslands (c. 33% fewer species). Inheritance effects of drainage, fertilizer and lime inputs, and the different species and management of cultivated pastures, may constrain the conservation benefits of altered pasture management compared with indigenous grasslands. [source] Information needs to support environmental impact assessment of the effects of European marine offshore wind farms on birdsIBIS, Issue 2006A.D. FOX European legislation requires Strategic Environmental Assessments (SEAs) of national offshore wind farm (OWF) programmes and Environmental Impact Assessments (EIAs) for individual projects likely to affect birds. SEAs require extensive mapping of waterbird densities to define breeding and feeding areas of importance and sensitivity. Use of extensive large scale weather, military, and air traffic control surveillance radar is recommended, to define areas, routes and behaviour of migrating birds, and to determine avian migration corridors in three dimensions. EIAs for individual OWFs should define the key avian species present; as well as assess the hazards presented to birds in terms of avoidance behaviour, habitat change and collision risk. Such measures, however, are less helpful in assessing cumulative impacts. Using aerial survey, physical habitat loss, modification, or gain and effective habitat loss through avoidance behaviour can be measured using bird densities as a proxy measure of habitat availability. The energetic consequences of avoidance responses and habitat change should be modelled to estimate fitness costs and predict impacts at the population level. Our present ability to model collision risk remains poor due to lack of data on species-specific avoidance responses. There is therefore an urgent need to gather data on avoidance responses; energetic consequences of habitat modification and avoidance flights and demographic sensitivity of key species, most affected by OWFs. This analysis stresses the importance of common data collection protocols, sharing of information and experience, and accessibility of results at the international level to better improve our predictive abilities. [source] Rapid biodiversity assessment of spiders (Araneae) using semi-quantitative sampling: a case study in a Mediterranean forestINSECT CONSERVATION AND DIVERSITY, Issue 2 2008PEDRO CARDOSO Abstract. 1A thorough inventory of a Mediterranean oak forest spider fauna carried out during 2 weeks is presented. It used a semi-quantitative sampling protocol to collect comparable data in a rigorous, rapid and efficient way. Four hundred and eighty samples of one person-hour of work each were collected, mostly inside a delimited 1-ha plot. 2Sampling yielded 10 808 adult spiders representing 204 species. The number of species present at the site was estimated using five different richness estimators (Chao1, Chao2, Jackknife1, Jackknife2 and Michaelis,Menten). The estimates ranged from 232 to 260. The most reliable estimates were provided by the Chao estimators and the least reliable was obtained with the Michaelis,Menten. However, the behavior of the Michaelis,Menten accumulation curves supports the use of this estimator as a stopping or reliability rule. 3Nineteen per cent of the species were represented by a single specimen (singletons) and 12% by just two specimens (doubletons). The presence of locally rare species in this exhaustive inventory is discussed. 4The effects of day, time of day, collector experience and sampling method on the number of adults, number of species and taxonomic composition of the samples are assessed. Sampling method is the single most important factor influencing the results and all methods generate unique species. Time of day is also important, in such way that each combination of method and time of day may be considered as a different method in itself. There are insignificant differences between the collectors in terms of species and number of adult spiders collected. Despite the high collecting effort, the species richness and abundance of spiders remained constant throughout the sampling period. [source] Photosynthetic pathways, spatial distribution, isotopic ecology, and implications for pre-Hispanic human diets in central-western ArgentinaINTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY, Issue 2 2009C. Llano Abstract In a number of areas around the world researchers have begun to use the isotopic values of subsistence resources as a means of determining diets of human populations. The objective of the present study is to classify the plant species present at distinct altitudes in southern Mendoza Province, Argentina, considering photosynthetic pathways in order to determine their ,13C isotopic signature. This will help to understand the relationships between diets and the isotopic values observed in archaeological human remains. Data compiled from various sources are used to establish the photosynthetic pathways and mean ,13C values. The results indicate that C3 species are dominant at high-altitude settings, and that the few identified C4 species were found primarily at lower altitudes. These results are intended to serve as a foundation for future isotopic studies designed to address relationships among species at different trophic levels. Copyright © 2009 John Wiley & Sons, Ltd. [source] Relationships between Fish Species Abundances and Water Transparency in Hypertrophic Turbid Waters of Temperate Shallow LakesINTERNATIONAL REVIEW OF HYDROBIOLOGY, Issue 2 2010Juan José Rosso Abstract We explored the relationships between Secchi disc depth and the abundance of fish species in very shallow, hypertrophic, turbid waters of Pampa Plain lakes, Argentine. We tested whether the abundance of any of the species present was associated with water transparency for lakes where water transparency, as measured by Secchi disc depth, ranged from 0.1 to 0.4 m. Overall, the abundance of five species (Cnesterodon decemmaculatus, Jenynsia multidentata, Corydoras paleatus, Pimelodella laticeps and Odontesthes bonariensis) seemed to be affected by this narrow gradient in water transparency. These findings represent an interesting result for turbid hypertrophic environments where narrow ranges in water transparency are traditionally neglected as important factors for fishes. We show, however, how water transparency patterns may be still important for some species in highly turbid waters with extremely narrow gradients in Secchi disc depth. (© 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] | ||||||||||||||||||||||||||||||||||||||||||||||