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Spatial Spread (spatial + spread)
Selected AbstractsTHE DIFFUSIVE SPREAD OF ALLELES IN HETEROGENEOUS POPULATIONSEVOLUTION, Issue 3 2004Garrick T. Skalski Abstract The spread of genes and individuals through space in populations is relevant in many biological contexts. I study, via systems of reaction-diffusion equations, the spatial spread of advantageous alleles through structured populations. The results show that the temporally asymptotic rate of spread of an advantageous allele, a kind of invasion speed, can be approximated for a class of linear partial differential equations via a relatively simple formula, c= 2,rD, that is reminiscent of a classic formula attributed to R. A. Fisher. The parameters r and D, represent an asymptotic growth rate and an average diffusion rate, respectively, and can be interpreted in terms of eigenvalues and eigenvectors that depend on the population's demographic structure. The results can be applied, under certain conditions, to a wide class of nonlinear partial differential equations that are relevant to a variety of ecological and evolutionary scenarios in population biology. I illustrate the approach for computing invasion speed with three examples that allow for heterogeneous dispersal rates among different classes of individuals within model populations. [source] Role of glial amino acid transporters in synaptic transmission and brain energeticsGLIA, Issue 3 2004Païkan Marcaggi Abstract This article reviews how the uptake of neurotransmitter by glial amino acid transporters limits the spatial spread of transmitter to preserve the independent operation of nearby synapses, temporally shapes postsynaptic currents, and regulates the effects of tonic transmitter release. We demonstrate the importance of amino acid uptake and recycling mechanisms for preventing the loss of energetically costly neurotransmitter from the brain, and also examine the suggestion that glutamate uptake into glia plays a key role in regulating the energy production of the brain. Finally, we assess the role of glial amino acid transporters in transmitter recycling pathways. © 2004 Wiley-Liss, Inc. [source] Will climate change be beneficial or detrimental to the invasive swede midge in North America?GLOBAL CHANGE BIOLOGY, Issue 8 2008Contrasting predictions using climate projections from different general circulation models Abstract Climate change may dramatically affect the distribution and abundance of organisms. With the world's population size expected to increase significantly during the next 100 years, we need to know how climate change might impact our food production systems. In particular, we need estimates of how future climate might alter the distribution of agricultural pests. We used the climate projections from two general circulation models (GCMs) of global climate, the Canadian Centre for Climate Modelling and Analysis GCM (CGCM2) and the Hadley Centre model (HadCM3), for the A2 and B2 scenarios from the Special Report on Emissions Scenarios in conjunction with a previously published bioclimatic envelope model (BEM) to predict the potential changes in distribution and abundance of the swede midge, Contarinia nasturtii, in North America. The BEM in conjunction with either GCM predicted that C. nasturtii would spread from its current initial invasion in southern Ontario and northwestern New York State into the Canadian prairies, northern Canada, and midwestern United States, but the magnitude of risk depended strongly on the GCM and the scenario used. When the CGCM2 projections were used, the BEM predicted an extensive shift in the location of the midges' climatic envelope through most of Ontario, Quebec, and the maritime and prairie provinces by the 2080s. In the United States, C. nasturtii was predicted to spread to all the Great Lake states, into midwestern states as far south as Colorado, and west into Washington State. When the HadCM3 was applied, southern Ontario, Saskatchewan, and Washington State were not as favourable for C. nasturtii by the 2080s. Indeed, when used with the HadCM3 climate projections, the BEM predicted the virtual disappearance of ,very favourable' regions for C. nasturtii. The CGCM2 projections generally caused the BEM to predict a small increase in the mean number of midge generations throughout the course of the century, whereas, the HadCM3 projections resulted in roughly the same mean number of generations but decreased variance. Predictions of the likely potential of C. nasturtii spatial spread are thus strongly dependent on the source of climate projections. This study illustrates the importance of using multiple GCMs in combination with multiple scenarios when studying the potential for spatial spread of an organism in response to climate change. [source] Effects of culling on spatial associations of Mycobacterium bovis infections in badgers and cattleJOURNAL OF APPLIED ECOLOGY, Issue 5 2007HELEN E JENKINS Summary 1Bovine tuberculosis (TB), caused by Mycobacterium bovis, has serious consequences for Britain's cattle industry. European badgers (Meles meles) can transmit infection to cattle, and for many years the British government culled badgers in a series of attempts to reduce cattle infections. 2We investigated the impact of badger culling on the spatial distribution of M. bovis infection in badger and cattle populations in replicated areas in England. 3M. bovis infection was significantly clustered within badger populations, but clustering was reduced when culls were repeated across wide areas. A significant spatial association between M. bovis infections in badgers and cattle herds likewise declined across successive culls. These patterns are consistent with evidence that badgers are less territorial and range more widely in culled areas, allowing transmission to occur over greater distances. 4Prior to culling, M. bovis infections were clustered within cattle populations. Where badger culling was localised, and in unculled areas just outside widespread culling areas, cattle infections became less spatially clustered as badger culling was repeated. This is consistent with expanded badger ranging observed in these areas. 5In contrast, clustering of infection in cattle persisted over time on lands where badgers were repeatedly culled over wide areas. While this lack of a temporal trend must be interpreted with caution, it might reflect persistent infection within, and continued transmission between, cattle herds in areas where transmission from badgers to cattle had been reduced by badger culling. Continued spatial association of infections in cattle and badgers in such areas might partly reflect transmission from cattle. 6Synthesis and applications: Our findings confirm that badger culling can prompt spatial spread of M. bovis infection, a phenomenon likely to undermine the utility of this approach as a disease control measure. Possible evidence of transmission from cattle, both to other cattle and to badgers, suggests that improved cattle controls might yield multiple benefits for TB management. [source] The use of breeding sites of Tilapia congica (Thys & van Audenaerde 1960) to delineate conservation sites in the Lake Tumba, Democratic Republic of Congo: toward the conservation of the lake ecosystemAFRICAN JOURNAL OF ECOLOGY, Issue 3 2010Bila-Isia Inogwabini Abstract To guide the zoning process in Lake Tumba, Democratic Republic of Congo, breeding sites of Tilapia congica were studied. Physical metrics measured were: nest depths, exposure to sun rays, distance from the edges, site spreads, and habitat types. Mean nest depth = 0.23 m ± 0.08 (SD), range = 0.04,2.2 m (n = 553 nests); 100% (n = 70 sites) sites were exposed to the sun and the polynomial regression analysis showed 90% sites were within the range 51,250 m from the lake shores (y = ,1.7143x2 + 10.371x, 1.8; R2 = 0.597, n = 70 sites), with 60% clumped within the range of 51,150 m, indicating a relationship between nesting sites and the distance from edges. The largest group spread group was 300 m, and among the four breeding sites identified, one was ,10 km long, meaning a zonal spatial spread , = 300 ha and a core reproduction zone ,, = 100 ha. T. congica built 87.30% of their nest in habitats where Hippo grass Vossia cuspidata (48.20%) and Water lily Nympheae stellata (39.10%) dominated. T. congica shared 41.81% of its nesting sites with other fish species, leading to the conclusion that protecting the species habitats would provide the umbrella for the conservation of other species. Résumé Pour orienter le processus de zonage au lac Tumba, en République Démocratique du Congo, nous avons étudié les sites de reproduction de Tilapia congica. Les paramètres physiques mesurés étaient : la profondeur des nids, l'exposition aux rayons du soleil, la distance par rapport à la berge, l'étendue des sites et les types d'habitat. La profondeur moyenne des nids = 0,23 m ± 0,08 (DS), le domaine vital du nid = 0,04,2,2 m (n = 553 nids); 100% des sites (n = 70) étaient exposés au soleil, et l'analyse de la régression polynomiale a montré que 90% des sites se trouvaient entre 51 et 250 m des berges du lac (y = ,1,7143x2 + 10,371x , 1,8; R2 = 0,597; n = 70 sites) et 60% d'entre eux étaient rassemblés à une distance comprise entre 51 et 150 m des berges, ce qui indique une relation entre les sites de nidification et la distance par rapport aux berges. Le groupe le plus étendu avait 300 m et, parmi les quatre sites de reproduction identifiés, un avait , 10 km de long, ce qui signifie une dispersion spatiale zonale , = 300 ha et une zone de reproduction centrale ,' = 100 ha. Les T.congica construisent 87,30% de leurs nids dans des habitats où dominent l'herbe à hippos Vossia cuspidata (48,20%) et les nénuphars Nymphea stellata (39,10%). Les T. congica partagent 41,81% de leurs sites de nidification avec d'autres espèces de poissons, d'où la conclusion que la protection des habitats de cette espèce fournirait aussi une protection à d'autres espèces. [source] The Orbitrap: a new mass spectrometerJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 4 2005Qizhi Hu Abstract Research areas such as proteomics and metabolomics are driving the demand for mass spectrometers that have high performance but modest power requirements, size, and cost. This paper describes such an instrument, the Orbitrap, based on a new type of mass analyzer invented by Makarov. The Orbitrap operates by radially trapping ions about a central spindle electrode. An outer barrel-like electrode is coaxial with the inner spindlelike electrode and mass/charge values are measured from the frequency of harmonic ion oscillations, along the axis of the electric field, undergone by the orbitally trapped ions. This axial frequency is independent of the energy and spatial spread of the ions. Ion frequencies are measured non-destructively by acquisition of time-domain image current transients, with subsequent fast Fourier transforms (FFTs) being used to obtain the mass spectra. In addition to describing the Orbitrap mass analyzer, this paper also describes a complete Orbitrap-based mass spectrometer, equipped with an electrospray ionization source (ESI). Ions are transferred from the ESI source through three stages of differential pumping using RF guide quadrupoles. The third quadrupole, pressurized to less than 10,3 Torr with collision gas, acts as an ion accumulator; ion/neutral collisions slow the ions and cause them to pool in an axial potential well at the end of the quadrupole. Ion bunches are injected from this pool into the Orbitrap analyzer for mass analysis. The ion injection process is described in a simplified way, including a description of electrodynamic squeezing, field compensation for the effects of the ion injection slit, and criteria for orbital stability. Features of the Orbitrap at its present stage of development include high mass resolution (up to 150 000), large space charge capacity, high mass accuracy (2,5 ppm), a mass/charge range of at least 6000, and dynamic range greater than 10.3 Applications based on electrospray ionization are described, including characterization of transition-metal complexes, oligosaccharides, peptides, and proteins. Use is also made of the high-resolution capabilities of the Orbitrap to confirm the presence of metaclusters of serine octamers in ESI mass spectra and to perform H/D exchange experiments on these ions in the storage quadrupole. Copyright © 2005 John Wiley & Sons, Ltd. [source] Architectural and growth traits differ in effects on performance of clonal plants: an analysis using a field-parameterized simulation modelOIKOS, Issue 5 2007Radka Wildová Individual traits are often assumed to be linked in a straightforward manner to plant performance and processes such as population growth, competition and community dynamics. However, because no trait functions in isolation in an organism, the effect of any one trait is likely to be at least somewhat contingent on other trait values. Thus, to the extent that the suite of trait values differs among species, the magnitude and even direction of correlation between values of any particular trait and performance is likely to differ among species. Working with a group of clonal plant species, we assessed the degree of this contingency and therefore the extent to which the assumption of simple and general linkages between traits and performance is valid. To do this, we parameterized a highly calibrated, spatially explicit, individual-based model of clonal plant population dynamics and then manipulated one trait at a time in the context of realistic values of other traits for each species. The model includes traits describing growth, resource allocation, response to competition, as well as architectural traits that determine spatial spread. The model was parameterized from a short-term (3 month) experiment and then validated with a separate, longer term (two year) experiment for six clonal wetland sedges, Carex lasiocarpa, Carex sterilis, Carex stricta, Cladium mariscoides, Scirpus acutus and Scirpus americanus. These plants all co-occur in fens in southeastern Michigan and represent a spectrum of clonal growth forms from strong clumpers to runners with long rhizomes. Varying growth, allocation and competition traits produced the largest and most uniform responses in population growth among species, while variation in architectural traits produced responses that were smaller and more variable among species. This is likely due to the fact that growth and competition traits directly affect mean ramet size and number of ramets, which are direct components of population biomass. In contrast, architectural and allocation traits determine spatial distribution of biomass; in the long run, this also affects population size, but its net effect is more likely to be mediated by other traits. Such differences in how traits affect plant performance are likely to have implications for interspecific interactions and community structure, as well as on the interpretation and usefulness of single trait optimality models. [source] Polymer ring formation by electron/hole injection from an STM tip into a C60 close-packed layerPHYSICA STATUS SOLIDI (B) BASIC SOLID STATE PHYSICS, Issue 13 2006Ryo Nouchi Abstract Polymerization and depolymerization of C60 molecules are induced by charge carrier injection from a scanning tunneling microscope tip into C60 close-packed layers. These reactions are hard to be achieved at single molecular precision because of a spatial spread of injected carriers. We report that the carrier-spreading effect produces a ring-shaped distribution of C60 polymers around the carrier injection point. Formation of the polymer ring of C60 is explained by energy dissipation of spreading carriers. Therefore, the polymer ring can be recognized as a direct reflection of carrier propagation. Subsequent electron or hole injections enlarge the ring. This result shows that both electrons and holes can induce both polymerization and depolymerization of C60 molecules. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Importance of secondary inoculum of Plasmopara viticola to epidemics of grapevine downy mildewPLANT PATHOLOGY, Issue 4 2005D. Gobbin To quantify the magnitude and the spatial spread of grapevine downy mildew secondary sporangia, 4685 Plasmopara viticola single lesion samples were collected from 18 plots spread across central Europe. Disease symptoms were collected on two to 22 sampling dates per plot between 2000 and 2002. Four multiallelic microsatellite markers were used for genotypic identification of pathogen samples. Genetic analysis showed more than 2300 site-specific P. viticola genotypes, indicating that populations are genetically rich demographic units. Approximately 70% of the genotypes were sampled once and 14% were sampled twice throughout the various epidemics. In the 18 populations only seven genotypes (0.3%) were identified more than 50 times. Three genotypes particularly successful in causing disease through secondary cycles showed mainly a clustered distribution. The distance of sporangial migration per secondary cycle was less than 20 m and their plot colonization rate was calculated at around 1,2 m2 day,1. Downy mildew epidemics of grapevine are therefore the result of the interaction of a multitude of genotypes, each causing limited (or a few) lesions, and of a dominant genotype able to spread stepwise at plot-scale. These findings contrast with current theories about grapevine downy mildew epidemiology, which postulate that there is massive vineyard colonization by one genotype and long-distance migration of sporangia. [source] Mitochondrial modulation of Ca2+ sparks and transient KCa currents in smooth muscle cells of rat cerebral arteriesTHE JOURNAL OF PHYSIOLOGY, Issue 3 2004Serguei Y. Cheranov Mitochondria sequester and release calcium (Ca2+) and regulate intracellular Ca2+ concentration ([Ca2+]i) in eukaryotic cells. However, the regulation of different Ca2+ signalling modalities by mitochondria in smooth muscle cells is poorly understood. Here, we investigated the regulation of Ca2+ sparks, Ca2+ waves and global [Ca2+]i by mitochondria in cerebral artery smooth muscle cells. CCCP (a protonophore; 1 ,m) and rotenone (an electron transport chain complex I inhibitor; 10 ,m) depolarized mitochondria, reduced Ca2+ spark and wave frequency, and elevated global [Ca2+]i in smooth muscle cells of intact arteries. In voltage-clamped (,40 mV) cells, mitochondrial depolarization elevated global [Ca2+]i, reduced Ca2+ spark amplitude, spatial spread and the effective coupling of sparks to large-conductance Ca2+ -activated potassium (KCa) channels, and decreased transient KCa current frequency and amplitude. Inhibition of Ca2+ sparks and transient KCa currents by mitochondrial depolarization could not be explained by a decrease in intracellular ATP or a reduction in sarcoplasmic reticulum Ca2+ load, and occurred in the presence of diltiazem, a voltage-dependent Ca2+ channel blocker. Ru360 (10 ,m), a mitochondrial Ca2+ uptake blocker, and lonidamine (100 ,m), a permeability transition pore (PTP) opener, inhibited transient KCa currents similarly to mitochondrial depolarization. In contrast, CGP37157 (10 ,m), a mitochondrial Na+,Ca2+ exchange blocker, activated these events. The PTP blockers bongkrekic acid and cyclosporin A both reduced inhibition of transient KCa currents by mitochondrial depolarization. These results indicate that mitochondrial depolarization leads to a voltage-independent elevation in global [Ca2+]i and Ca2+ spark and transient KCa current inhibition. Data also suggest that mitochondrial depolarization inhibits Ca2+ sparks and transient KCa currents via PTP opening and a decrease in intramitochondrial [Ca2+]. [source] Building anisotropic sampling schemes for the estimation of anisotropic dispersalANNALS OF APPLIED BIOLOGY, Issue 3 2009S. Soubeyrand Abstract Anisotropy, a structural property of dispersal, is observed in dispersal patterns occurring for a wide range of biological systems. While dispersal models more and more often incorporate anisotropy, the sampling schemes required to collect data for validation usually do not account for the anisotropy of dispersal data. Using a parametric model already published to describe the spatial spread of a plant disease, the wheat yellow rust, we carry out a study aimed at recommending an appropriate sampling scheme for anisotropic data. In a first step, we show with a simulation study that prior knowledge of dispersal anisotropy can be used to improve the sampling scheme. One of the main guidelines to be proposed is the orientation of the sampling grid around the main dispersal directions. In a second step, we propose a sequential sampling procedure (SSP) used to automatically build anisotropic sampling schemes adapted to the actual anisotropy of dispersal. The SSP is applied to simulated and real data. The proposed methodology is expected to be adapted easily to any kind of organisms with wind-borne propagule dispersal because it does not require the inclusion of biological features specific of the considered organism. [source] | |||||||||||||||||||