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Basal Nodes (basal + node)

Distribution by Scientific Domains

Life Sciences	50%

Selected Abstracts

Systematics and Biogeography of Hard Ticks, a Total Evidence Approach

CLADISTICS, Issue 1 2000
J.S.H. Klompen
Systematic relationships among the basal Ixodidae are examined using one morphological and three molecular data sets, 18S and 28S nuclear and 16S mitochondrial rDNA. Although different combinations of partitions are incompatible in a partition homogeneity test, combining them produces similar or better support for most major lineages through both additive and complementary effects. The different data sets are not complete for all taxa, but inclusion or exclusion of taxa with missing data for one or more data sets (8 of 29 ingroup taxa) does not influence overall tree topology and only weakly affects support levels. The only notable effect was based on gap treatment in the 28S data set. Gap treatment completely changes the arrangement and support levels for one basal node. The combined analyses show strong support for the Metastriata, a lineage including most endemic Australian Ixodes, and a lineage including the remaining Ixodes, but not for the Prostriata (=Ixodes s.l.). The distribution pattern of endemic Australian taxa (nearly all included in three exclusively Australian basal lineages) suggests that these lineages, and by extension the Ixodidae, originated after the isolation of Australia in the late Cretaceous, much more recently than previously indicated. [source]

Molecular clocks keep dispersal hypotheses afloat: evidence for trans-Atlantic rafting by rodents

JOURNAL OF BIOGEOGRAPHY, Issue 2 2010
Diane L. Rowe
Abstract Aim, In order to resolve disputed biogeographical histories of biota with Gondwanan continental distributions, and to assess the null hypothesis of vicariance, it is imperative that a robust geological time-frame be established. As an example, the sudden and coincident appearance of hystricognath rodents (Rodentia: Hystricognathi) on both the African and South American continents has been an irreconcilable controversy for evolutionary biologists, presenting enigmas for both Gondwanan vicariance and Late Eocene dispersal hypotheses. In an attempt to resolve this discordance, we aim to provide a more robust phylogenetic hypothesis and improve divergence-date estimates, which are essential to assessing the null hypothesis of vicariance biogeography. Location, The primary centres of distribution are in Africa and South America. Methods, We implemented parsimony, maximum-likelihood and Bayesian methods to generate a phylogeny of 37 hystricognath taxa, the most comprehensive taxonomic sampling of this group to date, on the basis of two nuclear gene regions. To increase phylogenetic resolution at the basal nodes, these data were combined with previously published data for six additional nuclear gene regions. Divergence dates were estimated using two relaxed-molecular-clock methods, Bayesian multidivtime and nonparametric rate smoothing. Results, Our data do not support reciprocal monophyly of African and South American lineages. Indeed, Old World porcupines (i.e. Hystricomorpha) appear to be more closely related to New World lineages (i.e. Caviomorpha) than to other Old World families (i.e. Bathyergidae, Petromuridae and Thryonomyidae). The divergence between the monophyletic assemblage of South American lineages and its Old World ancestor was estimated to have occurred c. 50 Ma. Main conclusions, Our phylogenetic hypothesis and divergence-date estimates are strongly at odds with Gondwanan-vicariance isolating mechanisms. In contrast, our data suggest that transoceanic dispersal has played a significant role in governing the contemporary distribution of hystricognath rodents. Molecular-clock analyses imply a trans-Tethys dispersal event, broadly confined to the Late Cretaceous, and trans-Atlantic dispersal within the Early Eocene. Our analyses also imply that the use of the oldest known South American rodent fossil as a calibration point has biased molecular-clock inferences. [source]

Sultana fruitfulness and yield as influenced by season, rootstock and trellis type

AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH, Issue 1 2001
KARL J. SOMMER
Abstract Field-grown vines (Vitis vinifera L. cv. Sultana) were examined for their fruitfulness and yield performance over four growing seasons. Vines were either grafted to Ramsey rootstock (Vitis champini) or were grown on their own roots. Four commercially applied trellising systems were investigated, namely, a T-trellis, a Shaw trellis with a double cordon, a Shaw trellis with a single cordon and a Shaw swing-arm trellis. Fruiting potential was assessed shortly after budburst using the Merbein bunch count method. Bunches on vines that had been counted in springtime were again counted at harvest, and vine yield recorded. During the four years of the experiment fruitfulness was strongly influenced by growing season. Fruitfulness per node along the cane followed a well-established trend. Bud fruitfulness was close to zero in basal nodes but increased steeply thereafter reaching a maximum between nodes 8 and 10. Fruitfulness then decreased steadily. Grafted vines were always less fruitful than own-rooted vines, and this difference was amplified for all trellis designs in years when fruitfulness was low. At the time of pruning, more canes were retained on grafted than own-rooted vines in accordance with the greater vigour of grafted vines. This pruning strategy resulted in a larger number of bunches on grafted relative to ungrafted vines. [source]

Phylogeny and biogeographical history of Trogoniformes, a pantropical bird order

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 4 2005
ROBERT G. MOYLE
With highly conserved morphology throughout the family, a tropical distribution, and no close living relatives, the trogons (Aves: Trogonidae) pose a difficult problem for systematists. Disjunct tropical distributions are often attributed to Gondwanan vicariance, but the fossil record for trogons is mostly from the Tertiary of Europe. This study examined support for the basal relationships among trogons using a combination of nuclear (RAG-1) and mitochondrial (ND2) DNA sequence data. Although some nodes could not be resolved with significant support, there is strong support for the basal position of three New World genera (Pharomachrus, Euptilotis, and Priotelus). This phylogenetic hypothesis differs markedly from previous studies of trogon relationships and taxonomic treatments. Biogeographically, it implies an origin and early vicariance events for the crown clade in the New World. Molecular divergence estimates place all of the basal nodes of the trogon phylogeny in the Oligocene, precluding a Gondwanan origin for modern trogons. © 2005 The Linnean Society of London, Biological Journal of the Linnean Society, 2005, 84, 725,738. [source]