Home About us Contact
|
Home About us Contact | ||
|
|
||
Source Trees (source + tree)
Selected AbstractsA Parallel PCG Solver for MODFLOWGROUND WATER, Issue 6 2009Yanhui Dong In order to simulate large-scale ground water flow problems more efficiently with MODFLOW, the OpenMP programming paradigm was used to parallelize the preconditioned conjugate-gradient (PCG) solver with in this study. Incremental parallelization, the significant advantage supported by OpenMP on a shared-memory computer, made the solver transit to a parallel program smoothly one block of code at a time. The parallel PCG solver, suitable for both MODFLOW-2000 and MODFLOW-2005, is verified using an 8-processor computer. Both the impact of compilers and different model domain sizes were considered in the numerical experiments. Based on the timing results, execution times using the parallel PCG solver are typically about 1.40 to 5.31 times faster than those using the serial one. In addition, the simulation results are the exact same as the original PCG solver, because the majority of serial codes were not changed. It is worth noting that this parallelizing approach reduces cost in terms of software maintenance because only a single source PCG solver code needs to be maintained in the MODFLOW source tree. [source] Destination-based seed dispersal homogenizes genetic structure of a tropical palmMOLECULAR ECOLOGY, Issue 8 2010JORDAN KARUBIAN Abstract As the dominant seed dispersal agents in many ecosystems, frugivorous animals profoundly impact gene movement and fine-scale genetic structure of plants. Most frugivores engage in some form of destination-based dispersal, in that they move seeds towards specific destinations, resulting in clumped distributions of seeds away from the source tree. Molecular analyses of dispersed seeds and seedlings suggest that destination-based dispersal may often yield clusters of maternal genotypes and lead to pronounced local genetic structure. The long-wattled umbrellabird Cephalopterus penduliger is a frugivorous bird whose lek mating system creates a species-specific pattern of seed dispersal that can potentially be distinguished from background dispersal processes. We used this system to test how destination-based dispersal by umbrellabirds into the lek affects gene movement and genetic structure of one of their preferred food sources Oenocarpus bataua, a canopy palm tree. Relative to background dispersal processes, umbrellabird mating behaviour yielded more diverse seed pools in leks that included on average five times more seed sources and a higher incidence of long-distance dispersal events. This resulted in markedly lower fine-scale spatial genetic structure among established seedlings in leks than background areas. These species-specific impacts of destination-based dispersal illustrate how detailed knowledge of disperser behaviour can elucidate the mechanistic link driving observed patterns of seed movement and genetic structure. [source] Reproductive potential and seedling establishment of the invasive alien tree Schinus molle (Anacardiaceae) in South AfricaAUSTRAL ECOLOGY, Issue 6 2009DONALD M. IPONGA Abstract Schinus molle (Peruvian pepper tree) was introduced to South Africa more than 150 years ago and was widely planted, mainly along roads. Only in the last two decades has the species become naturalized and invasive in some parts of its new range, notably in semi-arid savannas. Research is being undertaken to predict its potential for further invasion in South Africa. We studied production, dispersal and predation of seeds, seed banks, and seedling establishment in relation to land uses at three sites, namely ungrazed savanna once used as a military training ground; a savanna grazed by native game; and an ungrazed mine dump. We found that seed production and seed rain density of S. molle varied greatly between study sites, but was high at all sites (384 864,1 233 690 seeds per tree per year; 3877,9477 seeds per square metre per year). We found seeds dispersed to distances of up to 320 m from female trees, and most seeds were deposited within 50 m of putative source trees. Annual seed rain density below canopies of Acacia tortillis, the dominant native tree at all sites, was significantly lower in grazed savanna. The quality of seed rain was much reduced by endophagous predators. Seed survival in the soil was low, with no survival recorded beyond 1 year. Propagule pressure to drive the rate of recruitment: densities of seedlings and sapling densities were higher in ungrazed savanna and the ungrazed mine dump than in grazed savanna, as reflected by large numbers of young individuals, but adult : seedling ratios did not differ between savanna sites. Frequent and abundant seed production, together with effective dispersal of viable S. molle seed by birds to suitable establishment sites below trees of other species to overcome predation effects, facilitates invasion. Disturbance enhances invasion, probably by reducing competition from native plants. [source] Early fate of Myristica hypargyraea seeds dispersed by Ducula pacifica in Tonga, Western PolynesiaAUSTRAL ECOLOGY, Issue 4 2005HAYLEY J. MEEHAN Abstract Although pigeons from the genus Ducula are considered among the best avian dispersers of large seeds in Asia and the Pacific, little has been documented on their role. The early fate of dispersed and undispersed seeds of the large-seeded tree Myristica hypargyraea A. Gray was studied in order to understand the advantage of seed dispersal by the Pacific Pigeon, Ducula pacifica Gmelin in Tonga. Frequency of visits by frugivores to fruiting trees and dispersal distance of seeds were measured. Pre-dispersal vertebrate seed predation was assessed, then post-dispersal predation was measured over 160 days. Overall, pre-dispersal seed predation by parrots was low but variable among trees sampled. Most seeds (54.7%) in the study area were estimated to be dispersed by D. pacifica; 79.7% of those ingested were expelled directly beneath conspecific fruiting crowns, 20% were dispersed locally and <,0.3% were dispersed more than 300 m into a different forest type. Flying foxes (Pteropus tonganus Quoy and Gaimard) dispersed very few seeds (0.7%) and all were dropped below fruiting crowns. Between 4% and 39% of dispersed and undispersed seeds were still viable, or had established seedlings after 160 days. Most seeds had been removed or killed by rats, and seed survival was highest for locally dispersed seeds (approx. 20 m from source trees and within the M. hypargyraea forest). Although D. pacifica was the only frugivore observed to disperse seeds into this higher zone of survival, overall they did not confer a great advantage to seed survival since significant numbers of seeds/seedlings also persisted under fruiting crowns (27% under crowns compared with 39% locally dispersed). Nevertheless, D. pacifica was the only vector by which seeds were regularly moved within the M. hypargyraea forest and over longer distances, and hence, D. pacifica still plays a significant role in the regeneration of M. hypargyraea. [source] Spatial ecology of a threatened python (Morelia spilota imbricata) and the effects of anthropogenic habitat changeAUSTRAL ECOLOGY, Issue 3 2005D. PEARSON Abstract Large predators play important ecological roles, but often are sensitive to habitat changes and thus are early casualties of habitat perturbation. Pythons are among the largest predators in many Australian environments, and hence warrant conservation-orientated research. Carpet pythons (Morelia spilota imbricata) have declined across much of south-western Australia presumably because of habitat clearance and degradation. Information on habitat use, home range sizes and movements is needed to plan for the conservation of this important predator. We studied pythons at two study sites (Garden Island and Dryandra Woodland) with markedly different climates, habitat types and disturbance histories. We surgically implanted radio-transmitters in 91 pythons and tracked them for periods of 1 month to 4 years. Dryandra pythons remained inactive inside tree hollows during cooler months (May,September), whereas some (especially small) pythons on Garden Island continued to move and feed. Overall weekly displacements (mean = 100,150 m) were similar at the two study sites and among sex/age classes, except that reproductive females were sedentary during summer while they were incubating eggs. Home ranges averaged 15,20 ha. Adult male pythons had larger home ranges than adult females at Dryandra, but not at Garden Island. Radio-tracked snakes at Dryandra exhibited high site fidelity, returning to previously occupied logs after long absences and reusing tree hollows for winter shelter. Many of the logs used by snakes had been felled during plantation establishment >70 years ago, with little subsequent regeneration of source trees. In contrast, Garden Island snakes usually sheltered under dense shrubs. Habitat usage was similar among different sex/age classes of snakes at each site, except that juvenile pythons were more arboreal than adults. Although carpet pythons demonstrate great flexibility in habitat use, certain habitat elements appear critical for the persistence of viable populations. Fire plays a central role in this process, albeit in complex ways. For example, low-intensity fires reduce the availability of hollow logs on the ground at Dryandra and fail to regenerate shrub thickets required by prey species. Paradoxically, high-intensity fires stimulate shrub thickets and fell trees creating new logs , but might also threaten overwinter trees. Thus, the impact of disturbances (such as wildfires) on the viability of python populations will be mediated in complex ways by alteration to important microhabitats such as vegetation cover or log availability. At Dryandra, landscape management should include occasional fire events to generate new logs as well as shrub thickets used by prey. Strategic burning may also be required at Garden Island to regenerate some vegetation communities. [source] Molecular and morphological supertree of stony corals (Anthozoa: Scleractinia) using matrix representation parsimonyBIOLOGICAL REVIEWS, Issue 4 2005Alexander M. Kerr ABSTRACT The supertree algorithm matrix representation with parsimony was used to combine existing hypotheses of coral relationships and provide the most comprehensive species-level estimate of scleractinian phylogeny, comprised of 353 species (27% of extant species), 141 genera (63%) and 23 families (92%) from all seven suborders. The resulting supertree offers a guide for future studies in coral systematics by highlighting regions of concordance and conflict in existing source phylogenies. It should also prove useful in formal comparative studies of character evolution. Phylogenetic effort within Scleractinia has been taxonomically uneven, with a third of studies focussing on the Acroporidae or its most diverse genera. Sampling has also been geographically non-uniform, as tropical, reef-forming taxa have been considered twice as often as non-reef species. The supertree indicated that source trees concur on numerous aspects of coral relationships, such as the division between robust versus complex corals and the distant relationship between families in Archaeocoeniina. The supertree also supported the existence of a large, taxonomically diverse and monophyletic group of corals with many Atlantic representatives having exsert corallites. Another large, unanticipated clade consisted entirely of solitary deep-water species from three families. Important areas of ambiguity include the relationship of Astrocoeniidae to Pocilloporidae and the relative positions of several, mostly deep-water genera of Caryophylliidae. Conservative grafting of species at the base of congeneric groups with uncontroversial monophyletic status resulted in a more comprehensive, though less resolved tree of 1016 taxa. [source] | ||||||||||