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Sole Carbon (sole + carbon)
Terms modified by Sole Carbon Selected AbstractsSelection and identification of bacterial strains with methyl- tert -butyl ether, ethyl- tert -butyl ether, and tert -amyl methyl ether degrading capacitiesENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 11 2008Jessica Purswani Abstract Nine bacterial strains isolated from two hydrocarbon-contaminated soils were selected because of their capacity for growth in culture media amended with 200 mg/L of one of the following gasoline oxygenates: Methyl- tert -butyl ether (MTBE), ethyl- tert -butyl ether (ETBE), and tert -amyl methyl ether (TAME). These strains were identified by amplification of their 16S rRNA gene, using fD1 and rD1 primers, and were tested for their capacity to grow and biotransform these oxygenates in both mineral and cometabolic media. The isolates were classified as Bacillus simplex, Bacillus drentensis, Arthrobacter sp., Acinetobacter calcoaceticus, Acinetobacter sp., Gordonia amicalis (two strains), Nocardioides sp., and Rhodococcus ruber. Arthrobacter sp. (strain MG) and A. calcoaceticus (strain M10) consumed 100 (cometabolic medium) and 82 mg/L (mineral medium) of oxygenate TAME in 21 d, respectively, under aerobic conditions. Rhodococcus ruber (strain E10) was observed to use MTBE and ETBE as the sole carbon and energy source, whereas G. amicalis (strain T3) used TAME as the sole carbon and energy source for growth. All the bacterial strains transformed oxygenates better in the presence of an alternative carbon source (ethanol) with the exception of A. calcoaceticus (strain M10). The capacity of the selected strains to remove MTBE, ETBE, and TAME looks promising for application in bioremediation technologies. [source] Influence of phenanthrene and fluoranthene on the degradation of fluorene and glucose by Sphingomonas sp. strain LB126 in chemostat culturesFEMS MICROBIOLOGY ECOLOGY, Issue 1 2003René van Herwijnen Abstract Since bacteria degrading polycyclic aromatic hydrocarbon compounds (PAHs) in polluted soils are generally exposed to mixtures of PAHs, we examined the influence of simple PAH mixtures on the degradation activity of Sphingomonas sp. strain LB126. Fluorene serves as sole carbon and energy source for the strain LB126 and phenanthrene and fluoranthene are cometabolically degraded by this species. Chemostat cultures of the strain LB126 were used to study a potential inhibiting effect of phenanthrene and fluoranthene on the degradation of fluorene that was previously observed in batch cultures. We also looked at the effect of phenanthrene on the degradation of glucose in a chemostat culture to see if this effect was specific for the PAH-metabolic pathway or for the total metabolism of the strain. The co-substrates were supplied in a 5% to 30% fraction of fluorene. Phenanthrene and fluoranthene had no significant influence on growth. However, fluorene degradation was inhibited by both phenanthrene and fluoranthene. The effect of phenanthrene was about 10 times stronger than the effect of fluoranthene. Nevertheless, more than 95% removal of fluorene took place together with more than 95% removal of either phenanthrene or fluoranthene. The effect of phenanthrene on the strain LB126 could be ascribed to both toxicity and competitive inhibition, but the effect observed at steady state was due to competitive inhibition only. It appeared that the strain LB126 adapts to the toxicity of phenanthrene within five generations. The inhibitory effects observed previously in batch cultures of the strain LB126 should mainly be ascribed to the toxic effect of phenanthrene. [source] Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134FEMS MICROBIOLOGY REVIEWS, Issue 5 2008Danilo Pérez-Pantoja Abstract Cupriavidus necator JMP134 is a model for chloroaromatics biodegradation, capable of mineralizing 2,4-D, halobenzoates, chlorophenols and nitrophenols, among other aromatic compounds. We performed the metabolic reconstruction of aromatics degradation, linking the catabolic abilities predicted in silico from the complete genome sequence with the range of compounds that support growth of this bacterium. Of the 140 aromatic compounds tested, 60 serve as a sole carbon and energy source for this strain, strongly correlating with those catabolic abilities predicted from genomic data. Almost all the main ring-cleavage pathways for aromatic compounds are found in C. necator: the ,-ketoadipate pathway, with its catechol, chlorocatechol, methylcatechol and protocatechuate ortho ring-cleavage branches; the (methyl)catechol meta ring-cleavage pathway; the gentisate pathway; the homogentisate pathway; the 2,3-dihydroxyphenylpropionate pathway; the (chloro)hydroxyquinol pathway; the (amino)hydroquinone pathway; the phenylacetyl-CoA pathway; the 2-aminobenzoyl-CoA pathway; the benzoyl-CoA pathway and the 3-hydroxyanthranilate pathway. A broad spectrum of peripheral reactions channel substituted aromatics into these ring cleavage pathways. Gene redundancy seems to play a significant role in the catabolic potential of this bacterium. The literature on the biochemistry and genetics of aromatic compounds degradation is reviewed based on the genomic data. The findings on aromatic compounds biodegradation in C. necator reviewed here can easily be extrapolated to other environmentally relevant bacteria, whose genomes also possess a significant proportion of catabolic genes. [source] Sequential secretion of collagenolytic, elastolytic, and keratinolytic proteases in peptide-limited cultures of two Bacillus cereus strains isolated from woolJOURNAL OF APPLIED MICROBIOLOGY, Issue 1 2009A.C. Ad, güzel Abstract Aims:, To characterize the secretion of proteolytic activities against keratin, collagen and elastin in liquid cultures of Bacillus cereus IZ-06b and IZ-06r isolated from wool. Methods and Results:, Growth of B. cereus IZ-06b and IZ-06r were characterized in batch culture. Both strains needed an organic nitrogen source, were able to grow on wool or peptone as sole carbon and nitrogen sources, and metabolized glucose, maltose and other simple sugars. Proteolytic activities were investigated in batch cultures grown in peptide-restricted, carbon-sufficient medium. Secretion of proteases was induced by peptide limitation while different proteolytic activities appeared sequentially in the growth medium. When the most available components of the peptone were depleted, collagenolytic and elastolytic proteases were produced. These were later replaced by the production of keratinolytic protease. Conclusions:,B. cereus can adjust its proteolytic affinity profile in response to the supply of organic nitrogen and sequentially secrete proteases with activities targeted against increasingly inaccessible proteinous substrates as the nutritional availability in the environment deteriorates. Significance and Impact of the Study:, Peptide-limited, carbon-sufficient growth media containing no proteinous substrates are well suited for protease production in B. cereus while growth conditions can be adjusted to optimize the proteolytic affinity profiles. [source] A novel finding that Streptomyces clavuligerus can produce the antibiotic clavulanic acid using olive oil as a sole carbon sourceJOURNAL OF APPLIED MICROBIOLOGY, Issue 6 2008G. Efthimiou Abstract Aims:, This study aims to establish whether commercially available food oils can be used by Streptomyces clavuligerus as sole carbon sources for growth and clavulanic acid production. Methods and results:, Batch cultures in bioreactors showed that Strep. clavuligerus growth and clavulanic acid yields in a P-limited medium containing 0.6% (v/v) olive oil were respectively 2.5- and 2.6-fold higher than in a glycerol-containing medium used as control. Glycerol- and olive oil-grown cells present different macromolecular composition, particularly lipid and protein content. Conclusions:,Streptomyces clavuligerus uses olive oil as the sole carbon and energy source for growth and clavulanic acid production. Yields and production rates in olive oil are comparable to those reported for oil-containing complex media. Differences in yields and in the macromolecular composition indicate that different metabolic pathways convert substrate into product. Significance and impact of the study:, This is the first report of oils being used as the sole carbon source by Strep. clavuligerus. Apart from economic benefits, interesting questions are raised about Strep. clavuligerus physiology. Defined culture media allow physiological studies to be performed in the absence of interference by other compounds. Understanding how Strep. clavuligerus catabolises oils may have an economic impact in clavulanic acid production. [source] Degradation of isooctane by Mycobacterium austroafricanum IFP 2173: growth and catabolic pathwayJOURNAL OF APPLIED MICROBIOLOGY, Issue 3 2004F. Solano-Serena Abstract Aims:, Isooctane (2,2,4-trimethylpentane), a major component of gasoline formulations, is recalcitrant to biodegradation probably because of the quaternary carbon group it contains. Information on the biodegradability of this hydrocarbon is essential to evaluate its fate in the environment. For these reasons, the degradation kinetics and the catabolic pathway of isooctane were investigated in Mycobacterium austroafricanum IFP 2173, the only strain characterized to use it as sole carbon and energy source. Methods and Results:, The selected strain exhibited a rather moderate maximum growth rate (,max = 0·053 h,1) but degraded isooctane up to 99% with a mineralization yield of 45%, indicating attack of the quaternary carbon group. The GC/MS identification of metabolites, 2,4,4-trimethylpentanoic and dimethylpropanoic (pivalic) acids, which transiently accumulated in the cultures indicated that degradation started from the isopropyl extremity of the molecule and subsequently proceeded by catabolism of the tert -butyl moiety. The degradation of putative metabolic intermediates was investigated. The initial isooctane oxidation system was tentatively characterized. Conclusions:, The isooctane-degrading strain harboured two candidate systems for initial alkane oxidation. Although a cytochrome P450 was induced by isooctane degradation, the functional oxidation system was probably a nonheme alkane monooxygenase as indicated by PCR amplification and RT-PCR expression of an alkB gene. Significance and Impact of the Study:, Isooctane is a recalcitrant branched alkane. A plausible pathway of its degradation by Myco. austroafricanum was put forward. [source] Isolation and characterization of a biphenyl-utilizing psychrotrophic bacterium, Hydrogenophaga taeniospiralis IA3-A, that cometabolize dichlorobiphenyls and polychlorinated biphenyl congeners in Aroclor 1221JOURNAL OF BASIC MICROBIOLOGY, Issue 2 2006Adewale J. Lambo A psychrotrophic bacterium isolated from polychlorinated biphenyls (PCBs)-contaminated soil grew on biphenyl as sole carbon and energy source, and actively cometabolized PCBs at low temperature. Analysis of cellular fatty acids indicate that the bacterium is most closely related to Hydrogenophaga taeniospiralis . Resting cells incubated with 10 ppm of Aroclor 1221 at 5 or 30 °C for 48 h removed all mono-, most di-, and several trichlorobiphenyls. At 5 °C, removal of MCBs (monochlorobiphenyls) was between 63 to 89%, DCBs (dichlorobiphenyls) was between 30 to 78%, and TCBs (trichlorobiphenyls) was between 30 to 75%. At 30 °C, removal of MCBs was 100%, DCBs was between 30 to 100%, and TCBs was between 27 to 59%. Congeners with two or more ortho chlorine were generally resistant to degradation. However, removal of di- ortho plus para -substituted congeners at 30 °C and not at 5 °C, suggest that the presence of a para -chlorine enhanced the cometabolism of these congeners at 30 °C. Furthermore, after 72 h, resting cells removed 68 and 83% of 500 ,m of 2,4,-dichlorobiphenyl (2,4,-DCB) and, 35 and 44% of 500 ,m of 2,3-dichlorobiphenyl (2,3-DCB) at 5 and 30 °C, respectively. Analysis of metabolites by GC-MS indicates that the cometabolized 2,3-DCB was completely recovered as 2,3-chlorobenzoic acid (2,3-CBA), while the cometabolized 2,4,-DCB was not completely recovered as chlorobenzoic acid. To our knowledge, it is the first strain of Hydrogenophaga taeniospiralis found to degrade an organic pollutant, and also the first psychrotrophic strain of a member of the genus Hydrogenophaga to grow on biphenyl or cometabolize PCBs at low temperature. Results suggest that the bacterium has potential use in the bioremediation of PCB-contaminated sites in cold regions. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Arylsulfonates as sole source of sulfur for Clostridium pasteurianum DSM 12136JOURNAL OF BASIC MICROBIOLOGY, Issue 4 2005Chih-Ching Chien Prof. A variety of arylsulfonates were examined for their ability to support growth of Clostridium pasteurianum as sole source of sulfur. Among the eleven different arylsulfonates tested, six of them (benzenesulfonate, 4-toluenesulfonate, 4-xylene-2-sulfonate, 4-aminobenzenesulfonate, 4-sulfobenzoic acid, 1,3-benzenedisulfonate) could serve as sole sulfur source for C. pasteurianum DSM 12136. None of the sulfonates tested could serve as sole sulfur source for C. pasteurianum ATCC 6013. The two C. pasteurianum in this study could not utilize any of these sulfonates as sole carbon and energy source. We demonstrated that desulfonation of arylsulfonates could take place under anoxic conditions and the sulfur atom of these compounds could be utilized as sole source of sulfur by anaerobic bacteria. (© 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Microbial transformation of androst-4-ene-3, 17-dione by Bordetella sp.JOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 5 2009B4 CGMCC 222 Abstract BACKGROUND: Microbial transformation of steroids has attracted widespread attention, especially the transformation of those steroids synthesized with difficulty by chemical methods. In this study, microbial transformation of androst-4-ene-3, 17-dione (AD) by Bordetella sp. B4 was investigated, and the effect of temperature on transformation was studied. RESULTS: Three metabolites were purified by preparative TLC and HPLC, and identified as androsta-1,4-diene-3,17-dione (ADD), 9,-hydroxyandrost-4-ene-3, 17-dione (9,-OH-AD), and 3-hydroxy-9, 10-secoandrost-1, 3, 5-triene-9, 17-dione (3-OH-SATD) by nuclear magnetic resonance imaging (NMR), Fourier transform infrared spectroscopy (FTIR) and mass spectroscopy (MS). It was first reported that the genus of Bordetella has the capability of AD degradation. Microbial transformation of AD was performed at 30 °C, 37 °C, 40 °C and 45 °C. The 9,-OH-AD yield reached a maximum within 16 h when the strain was cultivated in media with AD as sole carbon at 37 °C. Surprisingly, ADD was produced by the strain cultivated at 40 °C but not at 37 °C, which was different from previous reports. It was deduced that the alcohol dehydrogenase that catalyzed the transformation of AD to ADD may be temperature sensitive. CONCLUSION: Androst-4-ene-3,17-dione was converted into 9,-hydroxyandrost-4-ene-3, 17-dione and other metabolites rapidly by Bordetella sp. B4. It is anticipated that the strain Bordetella sp. B4 CGMCC 2229 can be used in the steroids industry. Copyright © 2009 Society of Chemical Industry [source] Pleomorphism of the marine bacterium Teredinobacter turniraeLETTERS IN APPLIED MICROBIOLOGY, Issue 1 2001G.M. Ferreira Aims:,A morphology transition for the marine bacterium, Teredinobacter turnirae is reported. Methods and Results:,When grown in the rod-shaped morphology, the cells require high concentrations of NaCl (0·3 mol l,1) and secrete extracellular protease and endoglucanase activity. When this bacterium is grown in a medium containing casein as a sole carbon and nitrogen source, a major change in morphology to a stable aggregated form is obtained. Conclusions:,In the aggregated morphology, much higher protease production rates (170 Units ml,1 d,1 for aggregates vs. 15 Units ml,1 d,1 for rods, for the same initial biomass) and negligible endoglucanase titres are obtained. In addition, the aggregated morphology does not require sodium chloride for growth. Significance and Impact of the Study:,The phenomenon reported here describes a novel relationship between the cell morphology and the biochemical characteristics of the bacterium. [source] Physiological adaptation of Corynebacterium glutamicum to benzoate as alternative carbon source , a membrane proteome-centric viewPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 14 2009Ute Haußmann Abstract The ability of microorganisms to assimilate aromatic substances as alternative carbon sources is the basis of biodegradation of natural as well as industrial aromatic compounds. In this study, Corynebacterium glutamicum was grown on benzoate as sole carbon and energy source. To extend the scarce knowledge about physiological adaptation processes occurring in this cell compartment, the membrane proteome was investigated under quantitative and qualitative aspects by applying shotgun proteomics to reach a comprehensive survey. Membrane proteins were relatively quantified using an internal standard metabolically labeled with 15N. Altogether, 40 proteins were found to change their abundance during growth on benzoate in comparison to glucose. A global adaptation was observed in the membrane of benzoate-grown cells, characterized by increased abundance of proteins of the respiratory chain, by a starvation response, and by changes in sulfur metabolism involving the regulator McbR. Additional to the relative quantification, stable isotope-labeled synthetic peptides were used for the absolute quantification of the two benzoate transporters of C. glutamicum, BenK and BenE. It was found that both transporters were expressed during growth on benzoate, suggesting that both contribute substantially to benzoate uptake. [source] Fluorene and phenanthrene uptake by Pseudomonas putida ATCC 17514: Kinetics and physiological aspectsBIOTECHNOLOGY & BIOENGINEERING, Issue 3 2005Ana C. Rodrigues Abstract Pseudomonas putida ATCC 17514 was used as a model strain to investigate the characteristics of bacterial growth in the presence of solid fluorene and phenanthrene. Despite the lower water-solubility of phenanthrene, P. putida degraded this polycyclic aromatic hydrocarbon (PAH) at a maximum observed rate of 1.4 ± 0.1 mg L,1 h,1, higher than the apparent degradation rate of fluorene, 0.8 ± 0.07 mg L,1 h,1. The role of physiological processes on the biodegradation of these PAHs was analyzed and two different uptake strategies were identified. Zeta potential measurements revealed that phenanthrene-grown cells were slightly more negatively charged (,57.5 ± 4.7 mV) than fluorene-grown cells (,51.6 ± 4.9 mV), but much more negatively charged than glucose-grown cells (,26.8 ± 3.3 mV), suggesting that the PAH substrate induced modifications on the physical properties of bacterial surfaces. Furthermore, protein-to-exopolysaccharide ratios detected during bacterial growth on phenanthrene were typical of biofilms developed under physicochemical stress conditions, caused by the presence of sparingly water-soluble chemicals as the sole carbon and energy source for growth, the maximum value for TP/EPS during growth on phenanthrene (1.9) being lower than the one obtained with fluorene (5.5). Finally, confocal laser microscopy observations using a gfp -labeled derivative strain revealed that, in the presence of phenanthrene, P. putida::gfp cells formed a biofilm on accessible crystal surfaces, whereas in the presence of fluorene the strain grew randomly between the crystal clusters. The results showed that P. putida was able to overcome the lower aqueous solubility of phenanthrene by adhering to the solid PAH throughout the production of extracellular polymeric substances, thus promoting the availability and uptake of such a hydrophobic compound. © 2005 Wiley Periodicals, Inc. [source] Analysis of a Microbial Community Oxidizing Inorganic Sulfide and MercaptansBIOTECHNOLOGY PROGRESS, Issue 4 2001Kathleen E. Duncan Successful treatment of refinery spent-sulfidic caustic (which results from the addition of sodium hydroxide solutions to petroleum refinery waste streams) was achieved in a bioreactor containing an enrichment culture immobilized in organic polymer beads with embedded powdered activated carbon (Bio-Sep). The aerobic enrichment culture had previously been selected using a gas mixture of hydrogen sulfide and methyl mercaptan (MeSH) as the sole carbon and energy sources. The starting cultures for the enrichment consisted of several different Thiobacillispp. (T. thioparus, T. denitrificans, T. thiooxidans, and T.neopolitanus), as well as activated sludge from a refinery aerobic wastewater treatment system and sludge from an industrial anaerobic digester. Microscopic examination (light and SEM) of the beads and of microbial growth on the walls of the bioreactor revealed a great diversity of microorganisms. Further characterization was undertaken starting with culturable aerobic heterotrophic microorganisms (sequencing of PCR-amplified DNA coding for 16S rRNA, Gram staining) and by PCR amplification of DNA coding for 16S rRNA extracted directly from the cell mass, followed by the separation of the PCR products by DGGE (denaturing gradient gel electrophoresis). Eight prominent bands from the DGGE gel were sequenced and found to be closest to sequences of uncultured Cytophagales (3 bands),Gram-positive cocci (Micrococcineae), , proteobacteria (3 bands), and an unidentified , proteobacterium. Culturable microbes included several genera of fungi as well as various Gram-positive and Gram-negative heterotrophic bacteria not seen in techniques using direct DNA extraction. [source] | |||||||||||||||||||||||||