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Soil Organic Matter (soil + organic_matter)
Terms modified by Soil Organic Matter Selected AbstractsPhotodegradation of Soil Organic Matter and its Effect on Gram-negative Bacterial GrowthPHOTOCHEMISTRY & PHOTOBIOLOGY, Issue 5 2008Gabriela N. Bosio ABSTRACT To learn more about the role of the reactive oxygen species (ROS) in the production of bioavailable products of the dissolved organic matter, we investigate here the effect of the photolysis (,exc > 320 nm) of a soil extract (SE) on the growth of bacteria isolated from the same soil as used for obtaining the extract. Comparative experiments with Aldrich humic acid (AHA) as substrate were performed. The photodegradation of the SE was evaluated with different techniques,UV,visible absorption spectroscopy, fluorescence excitation emission matrices (EEM) and Fourier transform infrared spectroscopy (FTIR). Known ROS scavengers were employed to study the effect of photochemically produced ROS on the photodegradation of the substrates. To evaluate the effect of irradiation on the bioavailability of the SE and AHA, photolyzed and nonphotolyzed substrates were added to different culture media and the growth of Pseudomonas sp. isolated from the soil and a strain of Escherichia coli were studied. The different results obtained were assigned to the dissimilar metabolisms of both bacteria. [source] Diminishing Spatial Heterogeneity in Soil Organic Matter across a Prairie Restoration ChronosequenceRESTORATION ECOLOGY, Issue 2 2005Diana R. Lane Abstract Habitat restoration resulting in changes in plant community composition or species dominance can affect the spatial pattern and variability of soil nutrients. Questions about how these changes in soil spatial heterogeneity develop over time at restoration sites, however, remain unaddressed. In this study, a geostatistical approach was used to quantify changes over time in the spatial heterogeneity of soil organic matter (SOM) across a 26-year chronosequence of tallgrass prairie restoration sites at FermiLab, outside of Chicago, Illinois. We used total soil N and C as an index of the quantity of SOM. We also examined changes in C:N ratio, which can influence the turnover of SOM. Specifically, the spatial structure of total N, total C, and C:N ratio in the top 10 cm of soil was quantified at a macroscale (minimum spacing of 1.5 m) and a microscale (minimum spacing of 0.2 m). The magnitude of spatial heterogeneity (MSH) was characterized as the proportion of total sample variation explained by spatially structured variation. At the macroscale, the MSH for total N decreased with time since restoration (r2= 0.99, p < 0.001). The decrease in spatial heterogeneity over time corresponded with a significant increase in the dominance of the C4 grasses. At the microscale, there was significant spatial structure for total N at the 4-year-old, 16-year-old, and 26-year-old sites, and significant spatial structure for total C at the 16-year-old and 26-year-old sites. These results suggest that an increase in dominance of C4 grasses across the chronosequence is homogenizing organic matter variability at the field scale while creating fine-scale patterns associated with the spacing of vegetation. Areas of higher soil moisture were associated with higher soil N and C at the two oldest restoration sites and at the native prairie site, potentially suggesting patches of increased belowground productivity in areas of higher soil moisture. This study is one of the first to report significant changes over time in the spatial structure of organic matter in response to successional changes initiated by restoration. [source] Vegetation Change and Soil Nutrient Distribution along an Oasis-Desert Transitional Zone in Northwestern ChinaJOURNAL OF INTEGRATIVE PLANT BIOLOGY, Issue 11 2007Bao-Ming Chen Abstract Many studies have focused on soil nutrient heterogeneity and islands of fertility in arid ecosystems. However, few have been conducted on an oasis-desert transitional zone where there is a vegetation pattern changing from shrubs to annual herbs. The goal of the present study was to understand vegetation and soil nutrient heterogenity along an oasis-desert transitional zone in northwestern China. Three replicated sampling belts were selected at 200 m intervals along the transitional zone. Twenty-one quadrats (10 × 10 m) at 50 m intervals were located along each sampling belt. The vegetation cover was estimated through the quadrats, where both the soil under the canopy and the open soil were sampled simultaneously. The dominated shrub was Haloxylon ammodendron in the areas close to the oasis and Nitraria tangutorum dominated the areas close to the desert. In general, along the transitional zone the vegetation cover decreased within 660 m, increased above 660 m and decreased again above 1 020 m (close to the desert). The soil nutrients (organic matter, total N, NO3, and NH4+) showed significant differences along the zone. The soil nutrients except the soil NH4+ under the canopy were higher than those in open soil, confirming "islands of fertility" or nutrient enrichment. Only a slight downward trend of the level of "islands of fertility" for soil organic matter appeared in the area within 900 m. Soil organic matter both under canopy and in interspace showed a positive correlation with the total vegetation cover, however, there was no significant correlation between the other soil nutrients and the total vegetation cover. We also analyzed the relationship between the shrubs and annuals and the soil nutrients along the zone. Similarly, there was no significant correlation between them, except soil organic matter with the annuals. The results implied that annual plants played an important role in soil nutrient enrichment in arid ecosystem. [source] The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cyclingENVIRONMENTAL MICROBIOLOGY, Issue 11 2008Diana R. Nemergut Summary Many studies have shown that changes in nitrogen (N) availability affect primary productivity in a variety of terrestrial systems, but less is known about the effects of the changing N cycle on soil organic matter (SOM) decomposition. We used a variety of techniques to examine the effects of chronic N amendments on SOM chemistry and microbial community structure and function in an alpine tundra soil. We collected surface soil (0,5 cm) samples from five control and five long-term N-amended plots established and maintained at the Niwot Ridge Long-term Ecological Research (LTER) site. Samples were bulked by treatment and all analyses were conducted on composite samples. The fungal community shifted in response to N amendments, with a decrease in the relative abundance of basidiomycetes. Bacterial community composition also shifted in the fertilized soil, with increases in the relative abundance of sequences related to the Bacteroidetes and Gemmatimonadetes, and decreases in the relative abundance of the Verrucomicrobia. We did not uncover any bacterial sequences that were closely related to known nitrifiers in either soil, but sequences related to archaeal nitrifiers were found in control soils. The ratio of fungi to bacteria did not change in the N-amended soils, but the ratio of archaea to bacteria dropped from 20% to less than 1% in the N-amended plots. Comparisons of aliphatic and aromatic carbon compounds, two broad categories of soil carbon compounds, revealed no between treatment differences. However, G-lignins were found in higher relative abundance in the fertilized soils, while proteins were detected in lower relative abundance. Finally, the activities of two soil enzymes involved in N cycling changed in response to chronic N amendments. These results suggest that chronic N fertilization induces significant shifts in soil carbon dynamics that correspond to shifts in microbial community structure and function. [source] Development of a simulated earthworm gut for determining bioaccessible arsenic, copper, and zinc from soil,ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 7 2009Wai K. Ma Abstract Soil physicochemical characteristics and contamination levels alter the bioavailability of metals to terrestrialinvertebrates. Current laboratory-derived benchmark concentrations used to estimate risk do not take into account site-specific conditions, such as contaminant sequestration, and site-specific risk assessment requires a battery of time-consuming and costly toxicity tests. The development of an in vitro simulator for earthworm bioaccessibility would significantly shorten analytical time and enable site managers to focus on areas of greatest concern. The simulated earthworm gut (SEG) was developed to measure the bioaccessibility of metals in soil to earthworms by mimicking the gastrointestinal fluid composition of earthworms. Three formulations of the SEG (enzymes, microbial culture, enzymes and microbial culture) were developed and used to digest field soils from a former industrial site with varying physicochemical characteristics and contamination levels. Formulations containing enzymes released between two to 10 times more arsenic, copper, and zinc from contaminated soils compared with control and 0.01 M CaCl2 extractions. Metal concentrations in extracts from SEG formulation with microbial culture alone were not different from values for chemical extractions. The mechanism for greater bioaccessible metal concentrations from enzyme-treated soils is uncertain, but it is postulated that enzymatic digestion of soil organic matter might release sequestered metal. The relevance of these SEG results will need validation through further comparison and correlation with bioaccumulation tests, alternative chemical extraction tests, and a battery of chronic toxicity tests with invertebrates and plants. [source] Sorption kinetics of toluene in humic acid: A computational approachENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 2 2006Yang-Hsin Shih Abstract Molecular dynamics, a computational technique aiming to describe the time-dependent movement of molecules, has been applied to study the sorption kinetics of volatile organic contaminants in soil organic matter. The molecular dynamics simulation results obtain reasonably accurate estimates of diffusion rates and activation energy of the penetration of a volatile organic compound molecule into a model humic substance. The sorption rate of toluene to humic acid decreases with the density of the humic acid matrix and increases with temperature. All the present results indicate that the sorption of toluene into humic acid is mainly diffusion controlled. Finally, the present studies have shown that molecular dynamics of volatile organic compounds in humic substances yields meaningful results, which help in the understanding of diffusion at the molecular level and which facilitate the problem-solving capability for removing the contaminants from the soils. [source] Earthworm toxicity during chemical oxidation of diesel-contaminated sandENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 8 2005Kyung-Hee Shin Abstract An ecotoxicity test with Eisenia fetida was performed to monitor the removal of diesel and toxicity variation during the ozonation process. The three-dimensional (3-D) cell test was introduced for the monitoring of the ozonation process, and the removal rate based on total petroleum hydrocarbons (TPHs) mass was about 95% near the ozone inlet ports. This high removal rate might be caused by the low soil organic matter (SOM) content and low water content of sand. The use of a fiber-optic transflection dip probe (FOTDP) demonstrated that more than half of the injected ozone was consumed by reactions with diesel or natural ozone-consuming materials. The earthworm toxicity test using Eisenia fetida demonstrated that diesel concentrations in soil exceeding 10,000 mg/kg caused a dose-dependent weight loss in earthworms and increased mortality. Toxic effects were reduced greatly or eliminated after ozonation, and the degradation products of the ozonation were not toxic to the earthworms at the concentrations tested. One specific result was that the sublethal test on the earthworm might be more sensitive for the evaluation of the quality of contaminated soil, for some samples, which did not result in mortality and produced an adverse effect on weight. [source] Factors influencing the sorption of oxytetracycline to soilsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 4 2005Aaryn D. Jones Abstract Veterinary antibiotics such as oxytetracycline (OTC) increasingly are found in the environment and often come into direct contact with soils via the release of animal wastes. Oxytetracycline is known to sorb strongly to soils by interaction with soil organic matter, clay minerals, and metal oxides. However, current knowledge of the influence of soil properties on OTC sorption is limited, as is our ability to predict OTC sorption to soils. This work was aimed at identifying properties that most influence the extent of OTC sorption in a suite of soils from the eastern United States representing a wide range in soil properties. Thirty soils were well characterized, an OTC soil-water distribution coefficient (Kd) was determined for each soil, and statistical analyses were employed to determine appropriate soil descriptors of OTC sorption. Soil texture, cation exchange capacity, and iron oxide content seemed to most influence the extent of OTC sorption in soils with organic carbon (OC) content between 0 and 4%. Thus, the knowledge of these three soil properties would be key to anticipating the extent of OTC sorption and gaining insight into OTC fate within a given soil system. Notably, OC content appeared to influence OTC sorption only in a soil with 9% OC. [source] Pedometric mapping of soil organic matter using a soil map with quantified uncertaintyEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 3 2010B. Kempen This paper compares three models that use soil type information from point observations and a soil map to map the topsoil organic matter content for the province of Drenthe in the Netherlands. The models differ in how the information on soil type is obtained: model 1 uses soil type as depicted on the soil map for calibration and prediction; model 2 uses soil type as observed in the field for calibration and soil type as depicted on the map for prediction; and model 3 uses observed soil type for calibration and a pedometric soil map with quantified uncertainty for prediction. Calibration of the trend on observed soil type resulted in a much stronger predictive relationship between soil organic matter content and soil type than calibration on mapped soil type. Validation with an independent probability sample showed that model 3 out-performed models 1 and 2 in terms of the mean squared error. However, model 3 over-estimated the prediction error variance and so was too pessimistic about prediction accuracy. Model 2 performed the worst: it had the largest mean squared error and the prediction error variance was strongly under-estimated. Thus validation confirmed that calibration on observed soil type is only valid when the uncertainty about soil type at prediction sites is explicitly accounted for by the model. We conclude that whenever information about the uncertainty of the soil map is available and both soil property and soil type are observed at sampling sites, model 3 can be an improvement over the conventional model 1. [source] Organic matter quality of a forest soil subjected to repeated drying and different re-wetting intensitiesEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2010A. Schmitt Extended drought periods followed by heavy rainfall may increase in many regions of the Earth, but the consequences for the quality of soil organic matter and soil microbial communities are poorly understood. Here, we investigated the effect of repeated drying and re-wetting on microbial communities and the quality of particulate and dissolved organic matter in a Haplic Podzol from a Norway spruce stand. After air-drying, undisturbed soil columns were re-wetted at different intensities (8, 20 and 50 mm per day) and time intervals, so that all treatments received the same amount of water per cycle (100 mm). After the third cycle, SOM pools of the treatments were compared with those of non-dried control columns. Lignin phenols were not systematically affected in the O horizons by the treatments whereas fewer lignin phenols were found in the A horizon of the 20- and 50-mm treatments. Microbial biomass and the ratio of fungi to bacteria were generally not altered, suggesting that most soil microorganisms were well adapted to drying and re-wetting in this soil. However, gram-positive bacteria and actinomycetes were reduced whereas gram-negative bacteria and protozoa were stimulated by the treatments. The increase in the (cy 17: 0 + cy 19: 0)/(16:1,7c + 18:1,7c) ratio indicates physiological or nutritional stress for the bacterial communities in the O, A and B horizons with increasing re-wetting intensity. Drying and re-wetting reduced the amount of hydrolysable plant and microbial sugars in all soil horizons. However, CO2 and dissolved organic carbon fluxes could not explain these losses. We postulate that drying and re-wetting triggered chemical alterations of hydrolysable sugar molecules in organic and mineral soil horizons. [source] Antioxidants in soil organic matter and in associated plant materialsEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2009D. L. Rimmer Summary The presence of antioxidants in soil could have a significant effect on the dynamics of soil organic matter. In this paper we report some preliminary experiments, which demonstrate that antioxidants can be extracted from soils and that the quantities vary from soil to soil. Extraction with 1.0 m NaOH was effective, and this was then used on a range of mineral and organic soils, and the antioxidant capacity of the resulting extracts was measured. The antioxidant capacities obtained were positively correlated with soil carbon contents and with the dissolved organic carbon contents of the extracts. Expressing the data per mass of soil carbon showed that the antioxidants generally decreased with depth in the soil profile, suggesting that they were subject to degradation during humification. In a follow-up study, soil, litter and fresh plant samples were collected from 15 sites with a wide variety of vegetation types and analysed for their antioxidant capacities. The aim was to show that the antioxidant capacities in the soils were related to the antioxidant capacities of the fresh plant material and/or litter above. The antioxidant capacities of the soil samples were less than those in either fresh material or litter. While there was a significant positive relationship between the antioxidant capacities of fresh material and litter, no relationship existed between the antioxidant capacities of the soils and those of either fresh material or litter. [source] Distribution of polycyclic aromatic hydrocarbons in particle-size separates and density fractions of typical agricultural soils in the Yangtze River Delta, east ChinaEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 6 2008J. Z. Ni Summary Soil organic matter can be divided into different organic carbon (C) pools with different turnover rates. The organic pollutants in soils associated with these organic C pools may have different bioavailability and environmental risks during the decomposition of soil organic matter. We studied the distribution patterns of 15 USEPA priority polycyclic aromatic hydrocarbons (PAHs) in different particle-size separates (clay, fine silt, coarse silt, fine sand and coarse sand) and density fractions (light and heavy fractions) of nine agricultural topsoils (0,20 cm depth) from a contaminated area in the Yangtze River Delta region of east China. There was a decreasing trend in PAH concentration in particle-size separates with decreasing particle size. However, the different particle-size separates had similar PAH composition. The concentration of PAHs in the light fraction ranged from 13 037 to 107 299 ,g kg,1, far higher than in the heavy fraction, which ranged from 222 to 298 ,g kg,1. Although the light fraction accounted for only 0.4,2.3% of the soils, it was associated with 31.5,69.5% of soil PAHs. The organic matter in coarse silt had the strongest capacity for enrichment with PAHs. Combining the distributions of PAHs and the turnover rates of organic matter in different soil fractions, the environmental risks of PAH-polluted soils may be due mainly to the PAHs associated with sand and the light fraction. [source] Calibration model of microbial biomass carbon and nitrogen concentrations in soils using ultraviolet absorbance and soil organic matterEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 4 2008X. Xu Summary There is a need for a rapid, simple and reliable method of determining soil microbial biomass (SMB) for all soils because traditional methods are laborious. Earlier studies have reported that SMB-C and -N concentrations in grassland and arable soils can be estimated by measurement of UV absorbance in soil extracts. However, these previous studies focused on soils with small soil organic matter (SOM) contents, and there was no consideration of SOM content as a covariate to improve the estimation. In this study, using tropical and temperate forest soils with a wide range of total C (5,204 mg C g,1 soil) and N (1,12 mg N g,1 soil) contents and pH values (4.1,5.9), it was found that increase in UV absorbance of soil extracts at 280 nm (UV280) after fumigation could account for 92,96% of the variance in estimates of the SMB-C and -N concentrations measured by chloroform fumigation and extraction (P < 0.001). The data were combined with those of earlier workers to calibrate UV-based regression models for all the soils, by taking into account their varying SOM content. The validation analysis of the calibration models indicated that the SMB-C and -N concentrations in the 0,5 cm forest soils simulated by using the increase in UV280 and SOM could account for 86,93% of the variance in concentrations determined by chloroform fumigation and extraction (P < 0.001). The slope values of linear regression equations between measured and simulated values were 0.94 ± 0.03 and 0.94 ± 0.04, respectively, for the SMB-C and -N. However, simulation using the regression equations obtained by using only the data for forest profile soils gave less good agreement with measured values. Hence, the calibration models obtained by using the increase in UV280 and SOM can give a rapid, simple and reliable method of determining SMB for all soils. [source] Long-term effects of crop rotation and fertilization on soil organic matter compositionEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 6 2007M. Kaiser Summary Long-term effects of crop rotation and fertilization are mostly observed with respect to the amount of soil organic matter (SOM) and measured in terms of soil organic carbon (SOC). In this paper, we analyze the SOM composition of samples from long-term agricultural field experiments at sandy and clayey sites that include complex crop rotations and farm-yard manure applications. The organic matter (OM) composition of the soil samples, OM(Soil), and that of sequentially extracted water, OM(W), and sodium pyrophosphate, OM(PY), soluble fractions was analyzed using Fourier Transform Infrared Spectroscopy (FTIR). The fraction OM(PY) represented between 13 and 34% of SOC, about 10 times that of OM(W). Site specific differences in OM(Soil) composition were larger than those between crop rotations and fertilizer applications. The smaller C=O group content in FTIR spectra of OM(W) compared with OM(PY) suggests that analysis of the more stable OM(PY) fraction is preferable over OM(W) or OM(Soil) for identifying long-term effects, the OM(Soil) and OM(W) fractions and the content of CH groups being less indicative. Farm-yard manure application leads to a more similar content of C=O groups in OM(PY) between crop rotations and fertilizer plots at both sites. Short-term effects from soil tillage or potato harvesting on composition of OM require further studies. [source] Factors controlling aggregation in a minimum and a conventionally tilled undulating fieldEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 5 2007S. De Gryze Summary Wind and water erosion induce breakdown of soil aggregates and loss of soil organic matter. Whereas most of the relations between aggregation and its driving factors have been established on a plot scale, these relations might be very different within an undulating landscape where both erosion (by wind or water) and deposition occur. The aim of this study was to investigate to what degree spatial patterns in soil variables influence spatial patterns in aggregation under different tillage intensities. We studied an agricultural field of about 3 ha in the silty region of Belgium. The site was split into a conventional tillage (CT) and a minimum tillage (MT) system. Within the field, 396 geo-referenced surface soil samples (0,5 cm) were taken and analyzed for organic matter content, quantity of aggregates and a number of other soil properties. Under CT, 28.5% of the total sample variation was explained by the occurrence of depositional areas, 20.8% by the amount of soil organic matter, and 13.8% by the presence of a clay-rich B horizon which surfaced due to progressive water and tillage erosion. Regression analysis revealed that 27% of the variation in the quantity of macroaggregates (>0.25 mm) was accounted for by these three factors. Under MT, 27.1% of the total sample variation was related to the surface cover of Tertiary sand, 22.6% to the amount of soil organic matter, and 13% to erodibility. These three factors explained 53% of the variation in the quantity of macroaggregates. In the CT system, the correlation between grass- or maize- carbon and the quantity of macroaggregates was strongly linked to erodibility, while this was not the case in the MT system. We concluded that at this site, macroaggregation is dominated by landscape-scale processes (such as water or tillage erosion) rather than determined by the commonly considered local variables (such as small variations in texture or organic matter content). [source] The molecular composition of soil organic matter as determined by 13C NMR and elemental analyses and correlation with pesticide sorptionEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 6 2006R. Ahmad Summary Although the chemical composition of soil organic matter (SOM) is known to significantly influence sorption of pesticides and other pollutants, it has been difficult to determine the molecular nature of SOM in situ. Here, using 13C nuclear magnetic resonance (NMR) data and elemental composition in a molecular mixing model, we estimated the molecular components of SOM in 24 soils from various agro-ecological regions. Substantial variations were revealed in the molecular nature of SOM. As a proportion of soil carbon the proportion of the carbonyl component ranged from 0.006 to 0.05, charcoal from 0 to 0.15, protein from 0.09 to 0.29, aliphatic from 0.14 to 0.30, carbohydrate from 0.21 to 0.31, and lignin from 0.05 to 0.42. The relationships between Koc (sorption per unit mass of organic carbon) of carbaryl (1-naphthyl methylcarbamate) and phosalone (S- 6-chloro-2,3-dihydro-2-oxobenzoxazol-3-ylmethyl O,O -diethyl phosphorodithioate) and the molecular nature of organic matter in the soils were significant. Of the molecular components estimated, lignin and charcoal contents correlated best with sorption of carbaryl and phosalone. Aliphatic, carbohydrate and protein contents were found to be negatively correlated with the Koc of both pesticides. The study highlights the importance of the molecular nature of SOM in determining sorption affinities of non-ionic pesticides and presents an indirect method for sorption estimation of pesticides. [source] The turnover of carbohydrate carbon in a cultivated soil estimated by 13C natural abundancesEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 4 2006D. Derrien Summary Understanding the chemical composition of soil organic matter (SOM) requires the determination of the dynamics of each class of compounds. We measured the dynamics of carbon in neutral carbohydrates by use of natural 13C labelling in an experimental wheat and maize sequence extending over 23 years. The isotopic composition of individual neutral monosaccharides was determined in hydrolysed particle-size fractions by gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS) of trimethylsilyl (TMS) derivatives. The sensitivity in terms of 13C/12C ratios ranged between 1 and 2, depending on the monosaccharide. The age distribution of neutral sugar carbon was very similar to that of total soil carbon. Particulate organic matter (POM) was characterized by the predominance of glucose and xylose of vegetal origin. In POM >,200 µm, the mean age of sugar-C (5 years) was slightly less than that of total carbon (7 years). Xylose was younger than glucose. The fine fraction 0,50 µm contained mainly glucose, arabinose, galactose, xylose, fucose and mannose, which had predominantly microbial origins. The mean age of carbohydrate carbon in the fraction 0,50 µm was between 60 and 100 years and was similar to that of total organic carbon (OC). No difference in the age of carbon between the individual monosaccharides was found. The POM fraction 50,200 µm had an intermediate signature and turnover. Considering the typical lability of carbohydrates, the relatively great age of carbohydrate carbon may be explained by physical or chemical protection from degradation, as well as by recycling of soil organic matter carbon by soil microbes. [source] The role of mineral and organic components in phenanthrene and dibenzofuran sorption by soilEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 3 2006R. Celis Summary Improved predictions of sorption of hydrophobic organic compounds (HOCs) in soil require a better knowledge of the relative contribution of inorganic and organic soil constituents to the sorption process. In this paper, sorption of a three-ring polycyclic aromatic hydrocarbon (phenanthrene) and a three-ring heterocyclic,aromatic compound (dibenzofuran) by six agricultural soils, their clay-size fractions, and a series of single, binary, and ternary model sorbents was evaluated to elucidate the relative role of soil mineral and organic components in the retention of these two model HOCs. The sorption coefficients for phenanthrene and dibenzofuran on purified soil organic materials (Kd = 821,9080 litre kg,1) were two orders of magnitude greater than those measured on mineral model sorbents (Kd = 0,114 litre kg,1). This, along with the strong correlation between sorption and the organic C content of the soil clay fractions (r = 0.99, P < 0.01), indicated a primary role of soil organic matter in the retention of both compounds. However, weak relationships between phenanthrene and dibenzofuran sorption coefficients and the organic C content of the bulk soils and variability of Koc values among soils, clay fractions, and model sorbents (1340,21020 litre kg,1 C for phenanthrene and 1685,7620 litre kg,1 C for dibenzofuran) showed that sorption was not predictable exclusively from the organic C content of the materials. Organic matter heterogeneity and domain blockage arising from organic matter,clay interactions and associated pH shifts were identified as the most likely causes of the different organic C-normalized sorption capacities of the soils. A direct contribution from minerals to the sorption of phenanthrene and dibenzofuran by the soils studied was likely to be small. Our results suggested that suitable descriptors for the extent of organic matter,mineral interactions would help to improve current Koc -based sorption predictions and subsequently the assessment of risk associated with the presence of HOCs in soil. [source] Free radicals, antioxidants, and soil organic matter recalcitranceEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2006D. L. Rimmer Summary Highly reactive, and potentially damaging, free radicals are readily generated in our oxygen-rich environment, and are ubiquitous in biological systems. However, plants and animals have evolved protection against them with a range of antioxidant molecules, such as vitamins C and E, many of which are phenolic compounds. These stop the destructive chain reaction of free radical formation by being transformed into unreactive, stable free radicals. The biodegradation of food involves oxidation by free radicals, and is retarded by antioxidants. Similarly, the biodegradation of plant residues in soils involves free radicals; so the questions arise: (i) do soils have antioxidants, and (ii) what function might they have? The evidence suggests that they probably do have antioxidants. First, plant and animal remains added to soils will contain antioxidants. These are likely to persist for a time, particularly tannins, which are polyphenolic compounds with known antioxidant properties and which are relatively resistant to degradation. Second, studies using electron spin resonance spectroscopy have shown that humic materials contain stable semiquinone free radicals, and that their concentration increases as humification progresses. These semiquinone species are most likely to be derived from the reaction of phenolic compounds with reactive radicals. If this is the case, the phenolics are acting as antioxidants, because they are scavenging the reactive free radicals and terminating the oxidative chain reaction responsible for soil organic matter (SOM) degradation. Thus the soil's antioxidant capacity could control the rate of breakdown of organic matter in the more labile pools and could provide a chemical mechanism for the recalcitrance of SOM. Current available evidence for the nature of the recalcitrant pool in SOM is discussed in the light of this hypothesis, and the experimental approaches necessary for testing it are outlined. [source] Poorly crystalline mineral phases protect organic matter in acid subsoil horizonsEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 6 2005M. Kleber Summary Soil minerals are known to influence the biological stability of soil organic matter (SOM). Our study aimed to relate properties of the mineral matrix to its ability to protect organic C against decomposition in acid soils. We used the amount of hydroxyl ions released after exposure to NaF solution to establish a reactivity gradient spanning 12 subsoil horizons collected from 10 different locations. The subsoil horizons represent six soil orders and diverse geological parent materials. Phyllosilicates were characterized by X-ray diffraction and pedogenic oxides by selective dissolution procedures. The organic carbon (C) remaining after chemical removal of an oxidizable fraction of SOM with NaOCl solution was taken to represent a stable organic carbon pool. Stable organic carbon was confirmed as older than bulk organic carbon by a smaller radiocarbon (14C) content after oxidation in all 12 soils. The amount of stable organic C did not depend on clay content or the content of dithionite,citrate-extractable Fe. The combination of oxalate-extractable Fe and Al explained the greatest amount of variation in stable organic C (R2 = 0.78). Our results suggest that in acid soils, organic matter is preferentially protected by interaction with poorly crystalline minerals represented by the oxalate-soluble Fe and Al fraction. This evidence suggests that ligand exchange between mineral surface hydroxyl groups and negatively charged organic functional groups is a quantitatively important mechanism in the stabilization of SOM in acid soils. The results imply a finite stabilization capacity of soil minerals for organic matter, limited by the area density of reactive surface sites. [source] Mineral surfaces and soil organic matterEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2003K. Kaiser Summary The organic carbon content of soil is positively related to the specific surface area (SSA), but large amounts of organic matter in soil result in reduced SSA as determined by applying the Brunauer,Emmett,Teller (BET) equation to the adsorption of N2. To elucidate some of the controlling mechanisms of this relation, we determined the SSA and the enthalpy of N2 adsorption of separates with a density > 1.6 g cm,3 from 196 mineral horizons of forest soils before and after removal of organic matter with NaOCl. Likewise, we investigated these characteristics before and after sorption of increasing amounts of organic matter to four mineral soil samples, oxides (amorphous Al(OH)3, gibbsite, ferrihydrite, goethite, haematite), and phyllosilicates (kaolinite, illite). Sorption of organic matter reduced the SSA, depending on the amount sorbed and the type of mineral. The reduction in SSA decreased at larger organic matter loadings. The SSA of the mineral soils was positively related to the content of Fe oxyhydroxides and negatively related to the content of organic C. The strong reduction in SSA at small loadings was due primarily to the decrease in the micropores to which N2 was accessible. This suggests preferential sorption of organic matter at reactive sites in or at the mouths of micropores during the initial sorption and attachment to less reactive sites at increasing loadings. The exponential decrease of the heat of gas adsorption with the surface loading points also to a filling or clogging of micropores at early stages of organic matter accumulation. Desorption induced a small recovery of the total SSA but not of the micropore surface area. Destruction of organic matter increased the SSA of all soil samples. The SSA of the uncovered mineral matrix related strongly to the amounts of Fe oxyhydroxides and the clay. Normalized to C removed, the increase in SSA was small in topsoils and illuvial horizons of Podzols rich in C and large for the subsoils containing little C. This suggests that micropores preferentially associate with organic matter, especially at small loadings. The coverage of the surface of the soil mineral matrix as calculated from the SSA before and after destruction of organic matter was correlated only with depth, and the relation appeared to be linear. We conclude that mineralogy is the primary control of the relation between surface area and sorption of organic matter within same soil compartments (i.e. horizons). But at the scale of complete profiles, the surface accumulation and stabilization of organic matter is additionally determined by its input. [source] Accumulation of heterocyclic nitrogen in humified organic matter: a 15N-NMR study of lowland rice soilsEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 3 2000N. Mahieu Summary Recent intensification of cropping and the attendant longer submergence of the soil for lowland rice in tropical Asia appear to have altered the nature of the soil organic matter, and perhaps also nutrient cycling. To identify the dominant forms of organic nitrogen in the soils we extracted the labile mobile humic acid (MHA) and the more recalcitrant calcium humate (CaHA) fractions from soils under several long-term field experiments in the Philippines and analysed them by 15N-nuclear magnetic resonance spectroscopy. Amide N dominated the spectra of all humic acid (HA) samples (60,80% of total peak area). Its proportion of total spectral area increased with increasing intensity of cropping and length of time during which the soil was flooded and was greater in the MHA fraction than in the CaHA fraction. Simultaneously the spectral proportion of free amino N and other chemical shift regions decreased slightly with increasing length of submergence. Heterocyclic N was detected at modest proportions (7,22%) and was more prevalent in more humified samples, especially in the CaHA of aerated soils. Correlations of spectral proportions of heterocyclic N with other properties of the HA, reported elsewhere, were highly significant. Correlations were positive with visible light absorption (r=,0.86) and concentration of free radicals (r=,0.85), both of which are indices of humification, and negative with concentration of H (r=,,0.86), a negative index of humification. Correlations of spectral proportions of amide N with these properties were also highly significant but in each case of opposite sign to that of heterocyclic N. Proportions of heterocyclic N declined with increasing duration of submergence. The results suggest that (i) 15N-NMR can reproducibly measure some portion of heterocyclic N, (ii) formation of heterocyclic N is associated solely with gradual humification occurring over many years, and (iii) the abundant phenols in the submerged rice soils did not promote formation of heterocyclic N, and hence some other process is responsible for a substantial decrease in the availability of native N associated with intensive rice cropping. [source] Nutrient cycling efficiency explains the long-term effect of ecosystem engineers on primary productionFUNCTIONAL ECOLOGY, Issue 1 2007SÉBASTIEN BAROT Summary 1Soil organisms, such as earthworms, accelerate mineralization of soil organic matter and are thought to be beneficial for plant growth. This has been shown in short-term microcosm experiments. It is thus legitimate to ask whether these increases in plant growth are due to brief pulses of mineralization or whether these increases are long-lasting. 2This question was addressed using a system of differential equations modelling the effects of decomposers on nutrient cycling via trophic (nutrient assimilation) and nontrophic effects (through their ecosystem engineering activities). 3The analytical study of this model showed that these processes increase primary production in the long term when they recycle nutrients efficiently, allowing a small fraction of the recycled nutrients to be leached out of the ecosystem. 4Mineralization by the ecosystem engineering activities of decomposers seems to deprive them of a resource. However, it was shown that a decomposer may increase its own biomass, through its ecosystem engineering activities, provided the created recycling loop is efficient enough. 5Mechanisms through which earthworms may modify the efficiency of nutrient cycling are discussed. The necessity of measuring the effect of earthworms on the nutrient input,output balance of ecosystems under field conditions is emphasized. [source] Carbon sequestration under Miscanthus: a study of 13C distribution in soil aggregatesGCB BIOENERGY, Issue 5 2009MARTA DONDINI Abstract The growing of bioenergy crops has been widely suggested as a key strategy in mitigating anthropogenic CO2 emissions. However, the full mitigation potential of these crops cannot be assessed without taking into account their effect on soil carbon (C) dynamics. Therefore, we analyzed the C dynamics through four soil depths under a 14-year-old Miscanthus plantation, established on former arable land. An adjacent arable field was used as a reference site. Combining soil organic matter (SOM) fractionation with 13C natural abundance analyses, we were able to trace the fate of Miscanthus -derived C in various physically protected soil fractions. Integrated through the whole soil profile, the total amount of soil organic carbon (SOC) was higher under Miscanthus than under arable crop, this difference was largely due to the input of new C. The C stock of the macroaggregates (M) under Miscanthus was significantly higher than those in the arable land. Additionally, the C content of the micro-within macroaggregates (mM) were higher in the Miscanthus soil as compared with the arable soil. Analysis of the intramicroaggregates particulate organic matter (POM) suggested that the increase C storage in mM under Miscanthus was caused by a decrease in disturbance of M. Thus, the difference in C content between the two land use systems is largely caused by soil C storage in physically protected SOM fractions. We conclude that when Miscanthus is planted on former arable land, the resulting increase in soil C storage contributes considerably to its CO2 mitigation potential. [source] Stable carbon isotope signature of ancient maize agriculture in the soils of Motul de San José, GuatemalaGEOARCHAEOLOGY: AN INTERNATIONAL JOURNAL, Issue 3 2007Elizabeth A. Webb Soil profiles collected from a 2.5-km transect radiating from the Maya center of Motul de San José were analyzed for the stable carbon-isotope composition of their soil organic matter. The residues of maize (Zea mays), the only C4 plant known to have been cultivated in this area by the ancient Maya, impart a carbon-isotope signature to the underlying soil organic matter reservoir that is distinct from that produced by the native C3 forest vegetation. The varying turnover rates of the humic acid and humin fractions of the soil organic matter allowed us to distinguish between the presence of modern and ancient maize residues in these soils, and to delineate the lateral extent of maize cultivation at this ancient Maya site. The strongest isotopic evidence of maize residues is preserved in the soils surrounding the peripheral settlement of Chäkokot and at one locality within the urban center of Motul de San José. © 2007 Wiley Periodicals, Inc. [source] Application of carbon isotope analysis to ancient maize agriculture in the Petexbatún region of GuatemalaGEOARCHAEOLOGY: AN INTERNATIONAL JOURNAL, Issue 3 2007Kristofer D. Johnson The ancient Maya subsisted in an environment limited by shallow soils and unpredictable weather patterns until their collapse ,A.D. 800,900. Ancient subsistence can be a difficult subject, with little physical evidence of agricultural artifacts and structures. This study characterized soil profiles and utilized changes in stable carbon isotope ratios of soil organic matter (SOM) to locate and interpret areas of ancient C4 plant growth and maize (Zea mays) cultivation among the Maya. The investigation indicated some of the challenges the Maya faced, including shallow and sloped soils in some areas. The C4 plant signature was found in seasonal wetland soils on the opposite side of the Laguneta Aguateca from the ruins of Aguateca, but not in the perennial wetlands on the immediate side. No C4 plant signature was detected in the shoulder and backslope soils. Based on these findings, the ancient Maya of Aguateca probably adapted to their environment by farming rich toeslope soils. It is possible that maize was also grown in the seasonal wetlands adjacent to the site. If the steep backslope soils around Aguateca were used in ancient agriculture, the evidence has probably eroded away. © 2007 Wiley Periodicals, Inc. [source] Paleoindian environmental change and landscape response in Barger Gulch, Middle Park, ColoradoGEOARCHAEOLOGY: AN INTERNATIONAL JOURNAL, Issue 6 2005James H. Mayer Middle Park, a high-altitude basin in the Southern Rocky Mountains of north-central Colorado, contains at least 59 known Paleoindian localities. At Barger Gulch Locality B, an extensive Folsom assemblage (,10,500 14C yr B.P.) occurs within a buried soil. Radiocarbon ages of charcoal and soil organic matter, as well as stratigraphic positions of artifacts, indicate the soil is a composite of a truncated, latest-Pleistocene soil and a younger mollic epipedon formed between ,6000 and 5200 14C yr B.P. and partially welded onto the older soil following erosion and truncation. Radiocarbon ages from an alluvial terrace adjacent to the excavation area indicate that erosion followed by aggradation occurred between ,10,200 and 9700 14C yr B.P., and that the erosion is likely related to truncation of the latest-Pleistocene soil. Erosion along the main axis of Barger Gulch occurring between ,10,000 and 9700 14C yr B.P. was followed by rapid aggradation between ,9700 and 9550 14C yr B.P., which, along with the erosion at Locality B, coincides with the abrupt onset of monsoonal precipitation following cooling in the region ,11,000,10,000 14C yr B.P. during the Younger Dryas oscillation. Buried soils dated between ,9500 and 8000 14C yr B.P. indicate relative landscape stability and soil formation throughout Middle Park. Morphological characteristics displayed by early Holocene soils suggest pedogenesis under parkland vegetation in areas currently characterized by sagebrush steppe. The expansion of forest cover into lower elevations during the early Holocene may have resulted in lower productivity in regards to mammalian fauna, and may partly explain the abundance of early Paleoindian sites (,11,000,10,000 14C yr B.P., 76%) relative to late Paleoindian sites (,10,000,8000 14C yr B.P., 24%) documented in Middle Park. © 2005 Wiley Periodicals, Inc. [source] Experimental evidence for the attenuating effect of SOM protection on temperature sensitivity of SOM decompositionGLOBAL CHANGE BIOLOGY, Issue 10 2010JEROEN GILLABEL Abstract The ability to predict C cycle responses to temperature changes depends on the accurate representation of temperature sensitivity (Q10) of soil organic matter (SOM) decomposition in C models for different C pools and soil depths. Theoretically, Q10 of SOM decomposition is determined by SOM quality and availability (referred to here as SOM protection). Here, we focus on the role of SOM protection in attenuating the intrinsic, SOM quality dependent Q10. To assess the separate effects of SOM quality and protection, we incubated topsoil and subsoil samples characterized by differences in SOM protection under optimum moisture conditions at 25 °C and 35 °C. Although lower SOM quality in the subsoil should lead to a higher Q10 according to kinetic theory, we observed a much lower overall temperature response in subsoil compared with the topsoil. Q10 values determined for respired SOM fractions of decreasing lability within the topsoil increased from 1.9 for the most labile to 3.8 for the least labile respired SOM, whereas corresponding Q10 values for the subsoil did not show this trend (Q10 between 1.4 and 0.9). These results indicate the existence of a limiting factor that attenuates the intrinsic effect of SOM quality on Q10 in the subsoil. A parallel incubation experiment of 13C-labeled plant material added to top- and subsoil showed that decomposition of an unprotected C substrate of equal quality responds similarly to temperature changes in top- and subsoil. This further confirms that the attenuating effect on Q10 in the subsoil originates from SOM protection rather than from microbial properties or other nutrient limitations. In conclusion, we found experimental evidence that SOM protection can attenuate the intrinsic Q10 of SOM decomposition. [source] Shrub expansion stimulates soil C and N storage along a coastal soil chronosequenceGLOBAL CHANGE BIOLOGY, Issue 7 2010STEVEN T. BRANTLEY Abstract Expansion of woody vegetation in grasslands is a worldwide phenomenon with implications for C and N cycling at local, regional and global scales. Although woody encroachment is often accompanied by increased annual net primary production (ANPP) and increased inputs of litter, mesic ecosystems may become sources for C after woody encroachment because stimulation of soil CO2 efflux releases stored soil carbon. Our objective was to determine if young, sandy soils on a barrier island became a sink for C after encroachment of the nitrogen-fixing shrub Morella cerifera, or if associated stimulation of soil CO2 efflux mitigated increased litterfall. We monitored variations in litterfall in shrub thickets across a chronosequence of shrub expansion and compared those data to previous measurements of ANPP in adjacent grasslands. In the final year, we quantified standing litter C and N pools in shrub thickets and soil organic matter (SOM), soil organic carbon (SOC), soil total nitrogen (TN) and soil CO2 efflux in shrub thickets and adjacent grasslands. Heavy litterfall resulted in a dense litter layer storing an average of 809 g C m,2 and 36 g N m,2. Although soil CO2 efflux was stimulated by shrub encroachment in younger soils, soil CO2 efflux did not vary between shrub thickets and grasslands in the oldest soils and increases in CO2 efflux in shrub thickets did not offset contributions of increased litterfall to SOC. SOC was 3.6,9.8 times higher beneath shrub thickets than in grassland soils and soil TN was 2.5,7.7 times higher under shrub thickets. Accumulation rates of soil and litter C were highest in the youngest thicket at 101 g m,2 yr,1 and declined with increasing thicket age. Expansion of shrubs on barrier islands, which have low levels of soil carbon and high potential for ANPP, has the potential to significantly increase ecosystem C sequestration. [source] Temperature sensitivity and substrate quality in soil organic matter decomposition: results of an incubation study with three substratesGLOBAL CHANGE BIOLOGY, Issue 6 2010J. Å. MARTIN WETTERSTEDT Abstract Kinetic theory suggests that the temperature sensitivity of decomposition of soil organic matter should increase with increasing recalcitrance. This ,temperature,quality hypothesis' was tested in a laboratory experiment. Microcosms with wheat straw, spruce needle litter and mor humus were initially placed at 5, 15 and 25 °C until the same cumulative amount of CO2 had been respired. Thereafter, microcosms from each single temperature were moved to a final set of incubation temperatures of 5, 15 and 25 °C. Straw decomposed faster than needle litter at 25 and 15 °C, but slower than needle litter at 5 °C, and showed a higher temperature sensitivity (expressed as Q10) than needle litter at low temperatures. When moved to the same temperature, needle litter initially incubated at 5 and 15 °C had significantly higher respiration rates in the final incubation than litters initially placed at 25 °C. Mor humus placed at equal temperatures during the initial and final incubations had higher cumulative respiration during the final incubation than humus experiencing a shift in temperature, both up- and downwards. These results indicate that other factors than substrate quality are needed to fully explain the temperature dependence. In agreement with the hypothesis, Q10 was always higher for the temperature step between 5 and 15 °C than between 15 and 25 °C. Also in agreement with the temperature,quality hypothesis, Q10 significantly increased with increasing degree of decomposition in five out of the six constant temperature treatments with needle litter and mor humus. Q10s for substrates moved between temperatures tended to be higher than for substrates remaining at the initial temperature and an upward shift in temperature increased Q10 more than a downward shift. This study largely supports the temperature,quality hypothesis. However, other factors like acclimation and synthesis of recalcitrant compounds can modify the temperature response. [source] | ||||||||||||||||||||||||||||||||||