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Soil Microbial Biomass (soil + microbial_biomass)
Selected AbstractsFlux and turnover of fixed carbon in soil microbial biomass of limed and unlimed plots of an upland grassland ecosystemENVIRONMENTAL MICROBIOLOGY, Issue 4 2005J. Ignacio Rangel-Castro Summary The influence of liming on rhizosphere microbial biomass C and incorporation of root exudates was studied in the field by in situ pulse labelling of temperate grassland vegetation with 13CO2 for a 3-day period. In plots that had been limed (CaCO3 amended) annually for 3 years, incorporation into shoots and roots was, respectively, greater and lower than in unlimed plots. Analysis of chloroform-labile C demonstrated lower levels of 13C incorporation into microbial biomass in limed soils compared to unlimed soils. The turnover of the recently assimilated 13C compounds was faster in microbial biomass from limed than that from unlimed soils, suggesting that liming increases incorporation by microbial communities of root exudates. An exponential decay model of 13C in total microbial biomass in limed soils indicated that the half-life of the tracer within this carbon pool was 4.7 days. Results are presented and discussed in relation to the absolute values of 13C fixed and allocated within the plant,soil system. [source] Calibration model of microbial biomass carbon and nitrogen concentrations in soils using ultraviolet absorbance and soil organic matterEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 4 2008X. Xu Summary There is a need for a rapid, simple and reliable method of determining soil microbial biomass (SMB) for all soils because traditional methods are laborious. Earlier studies have reported that SMB-C and -N concentrations in grassland and arable soils can be estimated by measurement of UV absorbance in soil extracts. However, these previous studies focused on soils with small soil organic matter (SOM) contents, and there was no consideration of SOM content as a covariate to improve the estimation. In this study, using tropical and temperate forest soils with a wide range of total C (5,204 mg C g,1 soil) and N (1,12 mg N g,1 soil) contents and pH values (4.1,5.9), it was found that increase in UV absorbance of soil extracts at 280 nm (UV280) after fumigation could account for 92,96% of the variance in estimates of the SMB-C and -N concentrations measured by chloroform fumigation and extraction (P < 0.001). The data were combined with those of earlier workers to calibrate UV-based regression models for all the soils, by taking into account their varying SOM content. The validation analysis of the calibration models indicated that the SMB-C and -N concentrations in the 0,5 cm forest soils simulated by using the increase in UV280 and SOM could account for 86,93% of the variance in concentrations determined by chloroform fumigation and extraction (P < 0.001). The slope values of linear regression equations between measured and simulated values were 0.94 ± 0.03 and 0.94 ± 0.04, respectively, for the SMB-C and -N. However, simulation using the regression equations obtained by using only the data for forest profile soils gave less good agreement with measured values. Hence, the calibration models obtained by using the increase in UV280 and SOM can give a rapid, simple and reliable method of determining SMB for all soils. [source] Reversible transition between active and dormant microbial states in soilFEMS MICROBIOLOGY ECOLOGY, Issue 2-3 2001John Stenström Abstract The rate of respiration obtained in the substrate-induced respiration (SIR) method can be divided into the respiration rate of growing (r) and non-growing (K) microorganisms. The fraction of r is generally small (5,20%) in soils with no recent addition of substrates, but can be 100% in soils with high substrate availability. This suggests that substrate availability determines the proportion of biomass between these groups, and implies that transitions between them can take place reversibly. These hypotheses were tested by adding three different amounts of glucose which induced first-order, zero-order, and growth-associated respiration kinetics to three soils at four pre-incubation times (4, 12, 27, and 46 days) before the SIR measurement. An abiotic flush of CO2 in the SIR measurement was detected and corrected for before data analysis. Accumulated CO2 -C over 4 days after glucose addition, corrected for the respiration in unamended controls, corresponded to 41,50% mineralization of the glucose-C, and the relative amount mineralized by each soil was independent of the glucose amount added. The high glucose concentration gave an increased SIR, which reverted to the initial value within 27,46 days. In a specific sample, the maximum respiration rate induced during the pre-incubation, and the amount of organisms transformed from the K to the r state, as quantified in respiration rate units in the SIR measurement, were identical to each other, and these parameters were also highly correlated to the initial glucose concentration. The K,r transition was very fast, probably concurrent with the instantaneous increase in the respiration rate obtained by the glucose amendment. Thereafter, a slow first-order back-transition from the r to the K state ensued, with half-lives of 12, 23, and 70 days for the three soils. The results suggest the existence of community-level controls by which growth within or of the whole biomass is inhibited until it has been completely transformed into the r state. The data also suggest that the microbial specific activity is not related to the availability of exogenous substrate in a continuous fashion, rather it responds as a sharp transition between dormant and fully active. Furthermore, the inherent physiological state of the microbial biomass is strongly related to its history. It is proposed that the normal dynamics of the soil microbial biomass is an oscillation between active and dormant physiological states, while significant growth occurs only at substantial substrate amendment. [source] The influence of below-ground herbivory and defoliation of a legume on nitrogen transfer to neighbouring plantsFUNCTIONAL ECOLOGY, Issue 2 2007E. AYRES Summary 1Both foliar and root herbivory can alter the exudation of carbon from plant roots, which in turn can affect nitrogen availability in the soil. However, few studies have investigated the effects of herbivory on N fluxes from roots, which can directly increase N availability in the soil and uptake by neighbouring plants. Moreover, the combined effects of foliar and root herbivory on N fluxes remains unexplored. 2We subjected the legume white clover (Trifolium repens L.) to defoliation (through clipping) and root herbivory (by an obligate root-feeding nematode, Heterodera trifolii Goggart) to examine how these stresses individually, and simultaneously, affected the transfer of T. repens -derived N to neighbouring perennial ryegrass (Lolium perenne L.) plants using 15N stable-isotope techniques. We also examined the effects of defoliation and root herbivory on the size of the soil microbial community and the growth response of L. perenne. 3Neither defoliation nor root herbivory negatively affected T. repens biomass. On the contrary, defoliation increased root biomass (34%) and total shoot production by T. repens (100%). Furthermore, defoliation resulted in a fivefold increase in T. repens -derived 15N recovered in L. perenne roots, and increased the size of the soil microbial biomass (77%). In contrast, root herbivory by H. trifolii slightly reduced 15N transfer from T. repens to L. perenne when T. repens root 15N concentration was included as a covariate, and root herbivory did not affect microbial biomass. Growth of L. perenne was not affected by any of the treatments. 4Our findings demonstrate that defoliation of a common grassland legume can substantially increase the transfer of its N to neighbouring plants by directly affecting below-ground N fluxes. These finding require further examination under field conditions but, given the prevalence of N-limitation of plant productivity in terrestrial ecosystems, increased transfer of N from legumes to non-N-fixing species could alter competitive interactions, with implications for plant community structure. [source] Soil animals influence microbial abundance, but not plant,microbial competition for soil organic nitrogenFUNCTIONAL ECOLOGY, Issue 5 2004L. COLE Summary 1In a microcosm experiment we examined the effects of individual species of microarthropods, and variations in microarthropod diversity of up to eight species, on soil microbial properties and the short-term partitioning of a dual-labelled organic nitrogen source (glycine-2- 13C- 15N) between a grassland plant, Agrostis capillaris, and the soil microbial biomass, to determine how soil fauna and their diversity influence plant,microbial competition for organic N. 2We hypothesized that variations in the diversity of animals would influence the partitioning of 15N inputs between plants and the microbial biomass, due to the effect of animal grazing on the microbial biomass, and hence its ability to sequester N. 3Certain individual species of Collembola influenced the microbial community of the soil. Folsomia quadrioculata reduced microbial biomass, whereas Mesaphorura macrochaeta enhanced arbuscular mycorrhizal (AM) colonization of A. capillaris roots. Effects of increasing species richness of microarthropods on microbial biomass and AM colonization were detected, but these effects could be interpreted in relation to the presence or absence of individual species. 4Microbial uptake of added 15N was not affected by the presence of any of the individual species of animal in the monoculture treatments. Similarly, increasing diversity of microarthropods had no detectable effect on microbial 15N. 5Root and shoot uptake of 15N was also largely unaffected by both single species and variations in diversity of microarthropods. However, one collembolan species, Ceratophysella denticulata, reduced root 15N capture when present in monoculture. We did not detect 13C in plant tissue under any experimental treatments, indicating that all N was taken up by plants after mineralization. 6Our data suggest that, while single species and variations in diversity of microarthropods influence microbial abundance in soil, there is no effect on microbial or plant uptake of N. Overall, these data provide little support for the notion that microbial-feeding soil animals are regulators of microbial,plant competition for N. [source] Vertical distribution of soil properties under short-rotation forestry in Northern GermanyJOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, Issue 5 2010Petra Kahle Abstract Short-rotation forestry (SRF) on arable soils has high potentials for biomass production and leads to long-term no-tillage management. In the present study, the vertical distributions of soil chemical and microbial properties after 15 y of SRF with willows and poplar (Salix and Populus spp.) in 3- and 6-year rotations on an arable soil were measured and compared to a pertinent tilled arable site. Two transects at different positions in the relief (upper and lower slope; transect 1 and 2) were investigated. Short-rotation forestry caused significant changes in the vertical distribution of all investigated soil properties (organic and microbial C, total and microbial N, soil enzyme activities), however, the dimension and location (horizons) of significant effects varied. The rotation periods affected the vertical distribution of the soil properties within the SRF significantly. In transect 1, SRF had higher organic-C concentrations in the subsoil (Bv horizon), whereas in transect 2, the organic-C concentrations were increased predominantly in the topsoil (Ah horizon). Sufficient plant supply of P and K in combination with decreased concentrations of these elements in the subsoil under SRF pointed to an effective nutrient mobilization and transfer from the deeper soil horizons even in the long term. In transect 1, the microbial-C concentrations were higher in the B and C horizons and in transect 2 in the A horizons under SRF than under arable use. The activities of ,-glucosidases and acid phosphatases in the soil were predominantly lower under SRF than under arable use in the topsoil and subsoil. We conclude, that long-term SRF on arable sites can contribute to increased C sequestration and changes in the vertical distribution of soil microbial biomass and soil enzyme activities in the topsoil and also in the subsoil. [source] Methods for evaluating human impact on soil microorganisms based on their activity, biomass, and diversity in agricultural soilsJOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, Issue 3 2006Rainer Georg Joergensen Abstract The present review is focused on microbiological methods used in agricultural soils accustomed to human disturbance. Recent developments in soil biology are analyzed with the aim of highlighting gaps in knowledge, unsolved research questions, and controversial results. Activity rates (basal respiration, N mineralization) and biomass are used as overall indices for assessing microbial functions in soil and can be supplemented by biomass ratios (C : N, C : P, and C : S) and eco-physiological ratios (soil organic C : microbial-biomass C, qCO2, qNmin). The community structure can be characterized by functional groups of the soil microbial biomass such as fungi and bacteria, Gram-negative and Gram-positive bacteria, or by biotic diversity. Methodological aspects of soil microbial indices are assessed, such as sampling, pretreatment of samples, and conversion factors of data into biomass values. Microbial-biomass C (µg (g soil),1) can be estimated by multiplying total PLFA (nmol (g soil),1) by the FPLFA -factor of 5.8 and DNA (µg (g soil),1) by the FDNA -factor of 6.0. In addition, the turnover of the soil microbial biomass is appreciated as a key process for maintaining nutrient cycles in soil. Examples are briefly presented that show the direction of human impact on soil microorganisms by the methods evaluated. These examples are taken from research on organic farming, reduced tillage, de-intensification of land-use management, degradation of peatland, slurry application, salinization, heavy-metal contamination, lignite deposition, pesticide application, antibiotics, TNT, and genetically modified plants. [source] Tebuconazole dissipation and metabolism in Tifton loamy sand during laboratory incubation,PEST MANAGEMENT SCIENCE (FORMERLY: PESTICIDE SCIENCE), Issue 7 2004Timothy C Strickland Abstract The fungicide tebuconazole is widely used to control soil-borne and foliar diseases in peanuts and other crops. No published data are currently available on the extent and rate at which this compound degrades in soil. Unpublished data summarized in registration documents suggest that the compound is persistent, with 300,600 days half-life. We conducted a 63-day laboratory incubation to evaluate tebuconazole's dissipation kinetics and impact on soil microbial activity in Tifton loamy sand. Tifton soils support extensive peanut production in the Atlantic Coastal Plain region of Georgia and Alabama. Products containing tebuconazole are applied to an estimated 50% of the peanut acreage in the region. At the end of the incubation, 43 (±42)% of the parent compound was recovered in soil extracts. The first-order kinetic model, which gave a good fit to the dissipation data (r2 = 0.857), yielded a soil half-life (t1/2) of 49 days. This is 6,12 times more rapid than t1/2 values described in unpublished tebuconazole registration documents. Four degradates were identified. Tentative structural assignments indicated that degradates were derived from hydroxylation of the parent compound and/or chlorophenyl ring cleavage. Cleavage products showed a steady increase during the incubation, and on a molar basis were equal to 63% of the time zero tebuconazole concentration. No significant effect on soil microbial biomass was observed, indicating that when the compound is applied at normal agronomic rate it does not impact soil metabolic activity. Use of the soil-half life data derived in this study should improve the accuracy of tebuconazole fate assessments for Coastal Plain peanut production. The study also indicated that environmental assessment of selected degradates may be needed to fully evaluate risks of tebuconazole use. Published in 2004 for SCI by John Wiley & Sons, Ltd. [source] Monitoring of atrazine treatment on soil bacterial, fungal and atrazine-degrading communities by quantitative competitive PCRPEST MANAGEMENT SCIENCE (FORMERLY: PESTICIDE SCIENCE), Issue 3 2003Fabrice Martin-Laurent Abstract We report the development of quantitative competitive (QC) PCR assays for quantifying the 16S, 18S ribosomal and atzC genes in nucleic acids directly extracted from soil. QC-PCR assays were standardised, calibrated and evaluated with an experimental study aiming to evaluate the impact of atrazine application on soil microflora. Comparison of QC-PCR 16S and 18S results with those of soil microbial biomass showed that, following atrazine application, the microbial biomass was not affected and that the amount of 16S rDNA gene representing ,bacteria' increased transitorily, while the amount of 18S rDNA gene representing fungi decreased in soil. In addition, comparison of atzC QC-PCR results with those of atrazine mineralisation revealed that, in response to atrazine treatment, the amount of atzC gene increased transitorily in soil pre-treated with atrazine, suggesting that accelerated atrazine biodegradation in soil could be due to a transient increase in the size of the atrazine mineralising community. © 2003 Society of Chemical Industry [source] ,15N of soil N and plants in a N-saturated, subtropical forest of southern ChinaRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 17 2010K. Koba We investigated the ,15N profile of N (extractable NH, NO, and organic N (EON)) in the soil of a N-saturated subtropical forest. The order of ,15N in the soil was EON,>,NH,>,NO. Although the ,15N of EON had been expected to be similar to that of bulk soil N, it was higher than that of bulk soil N by 5,. The difference in ,15N between bulk soil N and EON (,15Nbulk-EON) was correlated significantly with the soil C/N ratio. This correlation implies that carbon availability, which determines the balance between N assimilation and dissimilation of soil microbes, is responsible for the high ,15N of EON, as in the case of soil microbial biomass ,15N. A thorough ,15N survey of available N (NH, NO, and EON) in the soil profiles from the organic layer to 100,cm depth revealed that the ,15N of the available N forms did not fully overlap with the ,15N of plants. This mismatch in ,15N between that of available N and that of plants reflects apparent isotopic fractionation during N uptake by plants, emphasizing the high N availability in this N-saturated forest. Copyright © 2010 John Wiley & Sons, Ltd. [source] Growth and yield of winter wheat (Triticum aestivum L.) and corn (Zea mays L.) near a high voltage transmission lineBIOELECTROMAGNETICS, Issue 2 2003G. Soja Abstract The objective of this study was to determine the effects of an electromagnetic field from a high voltage transmission line on the yield of agricultural crops cultivated underneath and near the transmission line. For 5 years, experiments with winter wheat and corn were carried out near the 380 kV transmission line Dürnrohr (Austria),Slavetice (Czech Republic). Different field strengths were tested by planting the crops at different distances from the transmission line. The plants were grown in experimental plots (1.77 m2), aligned to equal electric field strengths, and were cultivated according to standard agricultural practice. The soil for all plots was homogenized layer-specifically to a depth of 0.5 m to guarantee uniform soil conditions in the plant root environment. The soil was sampled annually for determinations of carbon content and the behavior of microbial biomass. During development of the vegetation, samples were collected at regular intervals for growth rate analyses. At physiological maturity, the plots (n,=,8) were harvested for grain and straw yield determinations. The average electric and magnetic field strengths at four distances from the transmission line (nominal distances: 40, 14, 8, and 2 m) were between 0.2 and 4.0 kV/m and between 0.4 and 4.5 µT, respectively. No effect of the field exposures on soil microbial biomass could be detected. The wheat grain yields were 7% higher (average of 5 years) in the plots with the lowest field exposure than in the plots nearer to the transmission line (P,<,.10). The responses of the plants were more pronounced in years with drought episodes during grain filling than in humid years. No significant yield differences were found for corn yields. The extent of the yield variations attributed to the distance from the transmission line was small compared to the observed annual variations in climatic or soil specific site characteristics. Bioelectromagnetics 24:91,102, 2003. © 2003 Wiley-Liss, Inc. [source] | ||||||||||||||||