Home About us Contact
|
Home About us Contact | ||
|
|
||
Size Estimates (size + estimate)
Kinds of Size Estimates Selected AbstractsPopulation estimation methods to quantify temporal variation in fish accumulations downstream of a weirFISHERIES MANAGEMENT & ECOLOGY, Issue 6 2006L. J. BAUMGARTNER Abstract, Temporal changes in the population sizes of seven migratory species were assessed over a 2-year period prior to the construction of a fishway on the Murrumbidgee River, Australia. Mark-recapture (Chapman,Petersen) and Jackknife removal methods were used at 3-month intervals to determine the composition and sizes of migratory fish populations. No difference in population size estimate was detected between the two methods. However, the Jackknife removal estimator generally provided less variable estimates for a greater number of species. Population sizes were greatest during summer and autumn when bony herring, Nematalosa erebi Günther, and common carp, Cyprinus carpio L., dominated the migratory community. Both estimators provided data essential to further the development of an appropriate fish passage facility and could be applied to other sites where the size of migratory fish populations is of interest. [source] Sample Size Determination for Establishing Equivalence/Noninferiority via Ratio of Two Proportions in Matched,Pair DesignBIOMETRICS, Issue 4 2002Man-Lai Tang Summary. In this article, we propose approximate sample size formulas for establishing equivalence or noninferiority of two treatments in match-pairs design. Using the ratio of two proportions as the equivalence measure, we derive sample size formulas based on a score statistic for two types of analyses: hypothesis testing and confidence interval estimation. Depending on the purpose of a study, these formulas can be used to provide a sample size estimate that guarantees a prespecified power of a hypothesis test at a certain significance level or controls the width of a confidence interval with a certain confidence level. Our empirical results confirm that these score methods are reliable in terms of true size, coverage probability, and skewness. A liver scan detection study is used to illustrate the proposed methods. [source] Cenozoic environmental change in South America as indicated by mammalian body size distributions (cenograms)DIVERSITY AND DISTRIBUTIONS, Issue 6 2001Darin A. Croft Abstract. A cenogram is a rank-ordered body size distribution of non-predatory terrestrial mammal species within a community. Studies of cenograms for modern faunas have shown that certain quantifiable attributes of cenograms are correlated with environmental variables such as rainfall and vegetation structure. Based on these correlations, cenograms of fossil communities have been used to infer palaeoenvironments and palaeoenvironmental variables. The present study uses cenogram statistics to interpret palaeoenvironmental conditions for eight Cenozoic South American mammal faunas, ranging from Eocene to Pleistocene in age. Body sizes for fossil taxa were taken either from the literature or were estimated using regressions of body size on molar length (or femoral bicondylar width) for modern mammals. Cenogram statistics are calculated for the eight fossil faunas and compared to similar statistics calculated for 16 modern South American mammal faunas, allowing palaeoenvironmental interpretations to be made. The palaeoenvironmental interpretations based on cenogram analyses sometimes support and sometimes contradict interpretations based on herbivore craniodental morphology (e.g. levels of hypsodonty). Simulations of expected errors in body size estimates for fossil taxa suggest that the discrepancies do not result primarily from erroneous body size estimates. It is possible that some of the incongruity in interpretations results from certain non-analogue attributes of South American faunas during much of the Cenozoic (e.g. the relatively depauperate mammalian predator diversity prior to the Great American Biotic Interchange). [source] Fossils provide better estimates of ancestral body size than do extant taxa in fishesACTA ZOOLOGICA, Issue 2009James S. Albert Abstract The use of fossils in studies of character evolution is an active area of research. Characters from fossils have been viewed as less informative or more subjective than comparable information from extant taxa. However, fossils are often the only known representatives of many higher taxa, including some of the earliest forms, and have been important in determining character polarity and filling morphological gaps. Here we evaluate the influence of fossils on the interpretation of character evolution by comparing estimates of ancestral body size in fishes (non-tetrapod craniates) from two large and previously unpublished datasets; a palaeontological dataset representing all principal clades from throughout the Phanerozoic, and a macroecological dataset for all 515 families of living (Recent) fishes. Ancestral size was estimated from phylogenetically based (i.e. parsimony) optimization methods. Ancestral size estimates obtained from analysis of extant fish families are five to eight times larger than estimates using fossil members of the same higher taxa. These disparities arise from differential survival of large-bodied members of early branching lineages, and are not statistical or taphonomic artefacts. Estimates of ancestral size obtained from a limited but judicious selection of fossil fish taxa are more accurate than estimates from a complete dataset of extant fishes. [source] Measuring dispersal and detecting departures from a random walk model in a grasshopper hybrid zoneECOLOGICAL ENTOMOLOGY, Issue 2 2003R. I. Bailey Abstract. 1. The grasshopper species Chorthippus brunneus and C. jacobsi form a complex mosaic hybrid zone in northern Spain. Two mark,release,recapture studies were carried out near the centre of the zone in order to make direct estimates of lifetime dispersal. 2. A model framework based on a simple random walk in homogeneous habitat was extended to include the estimation of philopatry and flying propensity. Each model was compared with the real data, correcting for spatial and temporal biases in the data sets. 3. All four data sets (males and females at each site) deviated significantly from a random walk. Three of the data sets showed strong philopatry and three had a long dispersal tail, indicating a low propensity to move further than predicted by the random walk model. 4. Neighbourhood size estimates were 76 and 227 for the two sites. These estimates may underestimate effective population size, which could be increased by the long tail to the dispersal function. The random walk model overestimates lifetime dispersal and hence the minimum spatial scale of adaptation. 5. Best estimates of lifetime dispersal distance of 7,33 m per generation were considerably lower than a previous indirect estimate of 1344 m per generation. This discrepancy could be influenced by prezygotic isolation, an inherent by-product of mosaic hybrid zone structure. [source] Reproductive strategies in small populations: using Atlantic salmon as a case studyECOLOGY OF FRESHWATER FISH, Issue 4 2007F. Juanes Abstract,,, Wild salmonid populations with only a few breeding adults may not exhibit a significant reduction in genetic variability compared with larger populations. Such an observation suggests that effective population sizes are larger than population size estimates based on direct adult counts and/or the mating strategy maximises outbreeding, contributing to increased heterozygosity. In the case of wild Atlantic salmon Salmo salar populations, stratification by age classes and sexes on the spawning grounds avoids inbreeding and increases genetic variability. We studied the breeding composition of four Spanish salmon populations. Over a 7-year period we concluded that the probability of within-cohort mating is very low: females generally reproduce after two sea-winters whereas males reproduce mostly as one sea-winter (grilse) and/or mature parr. Considering different levels of contribution of mature parr to spawning derived from field surveys, we developed a simple model for estimating effective population sizes and found that they doubled with 65% parr contribution expected for rivers at this latitude (43°N), and ranged from 100,800 individuals. The effect of between-cohort mating was modelled considering different ranges of differences in allele frequencies between cohorts and resulted in 28,50% increases in heterozygosity when considering a 65% parr contribution. The complex mating strategy of Atlantic salmon contributes to explain the high levels of genetic variability found for small populations of this species. This model can probably be extended to other animal species with mating strategies involving different cohorts. [source] Mechanisms of change in motivational interviewing: a review and preliminary evaluation of the evidenceADDICTION, Issue 5 2009Timothy R. Apodaca ABSTRACT Aims Motivational interviewing (MI) is an efficacious treatment for substance use disorders. However, little is known about how MI exerts its therapeutic effects. This review is a first attempt to summarize and evaluate the evidence for purported within-session mechanisms of change. The primary question of interest was: which MI constructs and variables appear to be the most promising candidates for mechanisms of change? Methods Literature searches were conducted to identify studies delivering MI in an individual format for the treatment of substance use disorders. Our search identified a total of 152 studies for review; 19 studies met inclusion criteria by providing data on at least one link in the causal chain model under examination. Effect size estimates were calculated for every possible step in the causal model where sufficient data were provided by study authors. Results Four constructs of therapist behavior were evaluated: MI-Spirit, MI-Consistent behaviors, MI-Inconsistent behaviors and therapist use of specific techniques. Five constructs of client behavior were evaluated: change talk/intention, readiness to change, involvement/engagement, resistance and the client's experience of discrepancy. The absence of experimental and full mediation studies of mechanisms of change was notable. Effect sizes were generally mixed. Conclusions The most consistent evidence was found for three constructs: client change talk/intention (related to better outcomes); client experience of discrepancy (related to better outcomes); and therapist MI-Inconsistent behavior (related to worse outcomes). Regarding therapist use of specific techniques, use of a decisional balance exercise showed the strongest association to better outcomes. [source] Assessing the effect of elevated carbon dioxide on soil carbon: a comparison of four meta-analysesGLOBAL CHANGE BIOLOGY, Issue 8 2009BRUCE A. HUNGATE Abstract Soil is the largest reservoir of organic carbon (C) in the terrestrial biosphere and soil C has a relatively long mean residence time. Rising atmospheric carbon dioxide (CO2) concentrations generally increase plant growth and C input to soil, suggesting that soil might help mitigate atmospheric CO2 rise and global warming. But to what extent mitigation will occur is unclear. The large size of the soil C pool not only makes it a potential buffer against rising atmospheric CO2, but also makes it difficult to measure changes amid the existing background. Meta-analysis is one tool that can overcome the limited power of single studies. Four recent meta-analyses addressed this issue but reached somewhat different conclusions about the effect of elevated CO2 on soil C accumulation, especially regarding the role of nitrogen (N) inputs. Here, we assess the extent of differences between these conclusions and propose a new analysis of the data. The four meta-analyses included different studies, derived different effect size estimates from common studies, used different weighting functions and metrics of effect size, and used different approaches to address nonindependence of effect sizes. Although all factors influenced the mean effect size estimates and subsequent inferences, the approach to independence had the largest influence. We recommend that meta-analysts critically assess and report choices about effect size metrics and weighting functions, and criteria for study selection and independence. Such decisions need to be justified carefully because they affect the basis for inference. Our new analysis, with a combined data set, confirms that the effect of elevated CO2 on net soil C accumulation increases with the addition of N fertilizers. Although the effect at low N inputs was not significant, statistical power to detect biogeochemically important effect sizes at low N is limited, even with meta-analysis, suggesting the continued need for long-term experiments. [source] Weighted Stair Climbing in Mobility-Limited Older People: A Pilot StudyJOURNAL OF AMERICAN GERIATRICS SOCIETY, Issue 4 2002MD Jonathan Bean MS OBJECTIVES: To evaluate weighted stair climbing exercise (SCE) as a means of increasing lower extremity muscle power in mobility-limited older people. DESIGN: Single-blinded, randomized controlled pilot study INTERVENTIONS: Subjects were randomized into one of two 12-week exercise programs. The intervention group (SCE) (n = 23) ascended and descended stairs, at a set pace, while wearing a weighted vest. The control group (WALK) (n = 22) participated in a standardized walking program. MEASUREMENTS: Primary and secondary outcomes included measures of muscle power and strength, submaximal aerobic capacity, and physical performance. RESULTS: SCE produced 17% improvement in double leg press peak power in comparison with WALK (P = .013) and significant improvement in stair climbing power from baseline (12%). Improvement in submaximal aerobic performance was equivalent for both groups. Although not statistically significant, effect size estimates suggest that SCE can potentially influence knee extension power and strength. Stair climb time was improved in both groups, whereas SCE produced significant improvements from baseline SPPB score in a subcohort of participants. CONCLUSIONS: These findings suggest that SCE may be a useful component of a home exercise program designed to enhance lower extremity muscle power, aerobic capacity, and functional performance. Further investigation is needed involving larger sample sizes and direct comparisons with other forms of resistance training. [source] Amitriptyline treatment of chronic pain in patients with temporomandibular disordersJOURNAL OF ORAL REHABILITATION, Issue 10 2000O. Plesh Randomized clinical trials of amitriptyline will require data from pilot studies to be used for sample size estimates, but such data are lacking. This study investigated the 6-week and 1-year effectiveness of low dose amitriptyline (10,30 mg) for the treatment of patients with chronic temporomandibular disorder (TMD) pain. Based on clinical examination, patients were divided into two groups: myofascial and mixed (myofascial and temporomandibular joint disorders). Baseline pain was assessed by a Visual Analogue Scale (VAS) for pain intensity and by the McGill Pain Questionnaire (MPQ). Depression was assessed by the Beck Depression Inventory (BDI) short form. Patient assessment of global treatment effectiveness was obtained after 6 weeks and 1 year of treatment by using a five-point ordinal scale: (1) worse, (2) unchanged, (3) minimally improved, (4) moderately improved, (5) markedly improved. The results showed a significant reduction for all pain scores after 6 weeks and 1 year post-treatment. The depression scores changed in depressed but not in non-depressed patients. Global treatment effectiveness showed significant improvement 6 weeks and 1 year post-treatment. However, pain and global treatment effectiveness were less improved at 1 year than at 6 weeks. [source] Potential outcome measures and trial design issues for multiple system atrophy,MOVEMENT DISORDERS, Issue 16 2007Susanne May PhD Abstract Multiple system atrophy (MSA) is a neurodegenerative disorder exhibiting a combination of parkinsonism, cerebellar ataxia, and autonomic failure. A disease-specific scale, the Unified Multiple System Atrophy Rating Scale (UMSARS), has been developed and validated to measure progression of MSA, but its use as an outcome measure for therapeutic trials has not been evaluated. On the basis of twelve months of follow-up from an observational study of 67 patients with probable MSA, we evaluated three disease-specific scores: Activities of Daily Living, Motor Examination, and a combined score from the UMSARS and two general health scores, the Physical Health and Mental Health scores of the SF-36 health survey, for their use as outcome measures in a therapeutic trial. We discuss related design issues and provide sample size estimates. Scores based on the disease-specific UMSARS seemed to be equal or superior to scores based on the SF-36 health survey. They appeared to capture disease progression, were well correlated and required the smallest sample size. The UMSARS Motor Examination score exhibited the most favorable characteristics as an outcome measure for a therapeutic trial in MSA with 1 year of follow-up. © 2007 Movement Disorder Society [source] Spatial variation in density and total size estimates in fragmented primate populations: the golden-crowned sifaka (Propithecus tattersalli)AMERICAN JOURNAL OF PRIMATOLOGY, Issue 1 2010Erwan Quéméré Abstract The golden-crowned sifaka (Propithecus tattersalli) is an endangered lemur species found only in the Daraina region, a very restricted area in north-eastern Madagascar. Its forest habitat is highly fragmented and expected to suffer from significant changes in the near future. The species is poorly known and only one census study, carried out in 2000, has ever been published. It is thus crucial to update the conservation status of the golden-crowned sifaka before major anthropogenic environmental changes take place. Using the line-transect approach, we estimated the species density in the main forest fragments located in both the peripheral and central parts of the distribution range, including both protected and unprotected areas. In parallel, we tried to determine whether an edge effect could be detected by comparing densities at different distances from the forest edges. We found important variation of sifaka densities among forest fragments. The total species abundance is thus difficult to determine, but we estimated that it is likely to be over 18,000, two to three times higher than previously thought. However, our data also suggested that most P. tattersalli live in forests located in the central part of the distribution range and that the estimated densities in the central part were high (>80 individuals/km2). Two forest fragments, found to host a large part of the total population, are currently outside the managed area and their incorporation to the managed area is strongly recommended. Lastly, as expected for a folivorous and not heavily hunted species, our results are consistent with the hypothesis that this species does not experience a clear edge effect, at least during the first half of the dry season. This could be due to a high resiliency to habitat fragmentation or to the fact that fragmentation has been going on for some time. Am. J. Primatol. 72:72,80, 2010. © 2009 Wiley-Liss, Inc. [source] Phylogeny and Nucleomorph Karyotype Diversity of Chlorarachniophyte AlgaeTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 5 2007TIA D. SILVER ABSTRACT. Chlorarachniophytes are flagellated and/or reticulopod-forming marine algae with chlorophyll a - and b -containing plastids of secondary endosymbiotic origin. They are one of only two algal groups known to possess a "nucleomorph" (i.e. the remnant nucleus of the eukaryotic endosymbiont that donated the plastid). Apart from the recently sequenced nucleomorph genome of Bigelowiella natans, little is known about the size, structure, and composition of chlorarachniophyte nucleomorph genomes. Toward the goal of better understanding nucleomorph genome diversity, as well as establishing a phylogenetic framework with which to interpret variation in chlorarachniophyte morphology, ultrastructure, and life cycle, we are studying a wide range of chlorarachniophyte strains from public culture collections and natural habitats. We have obtained 22 new chlorarachniophyte nuclear and nucleomorph 18S rRNA gene (18S rDNA) sequences and nucleomorph genome size estimates for 14 different strains. Consistent with previous studies, all of the chlorarachniophytes examined appear to possess three nucleomorph chromosomes. However, our results suggest considerable variation in nucleomorph genome size and structure, with individual chromosome sizes ranging from ,90 to ,210 kbp, and total genome sizes between ,330 kbp in Lotharella amoebiformis and ,610 kbp in unidentified chlorarachniophyte strain CCMP622. The significance of these phylogenetic and nucleomorph karyotype data is discussed. [source] Gene flow and melanism in garter snakes revisited: a comparison of molecular markers and island vs. coalescent modelsBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2003TONYA D. BITTNER Within populations, the stochastic effect of genetic drift and deterministic effect of natural selection are potentially weakened or altered by gene flow among populations. The influence of gene flow on Lake Erie populations of the common garter snake has been of particular interest because of a discontinuous colour pattern polymorphism (striped vs. melanistic) that is a target of natural selection. We reassessed the relative contributions of gene flow and genetic drift using genetic data and population size estimates. We compared all combinations of two marker systems and two analytical approaches to the estimation of gene flow rates: allozymes (data previously published), microsatellite DNA (new data), the island model (FST -based approach), and a coalescence-based approach. For the coalescence approach, mutation rates and sampling effects were also investigated. While the two markers produced similar results, gene flow based on FST was considerably higher (Nm > 4) than that from the coalescence-based method (Nm < 1). Estimates of gene flow are likely to be inflated by lack of migration-drift equilibrium and changing population size. Potentially low rates of gene flow (Nm < 1), small population size at some sites, and positive correlations of number of microsatellite DNA alleles and island size and between M, mean ratio of number of alleles to range in allele size, and island size suggest that in addition to selection, random genetic drift may influence colour pattern frequencies. © 2003 The Linnean Society of London, Biological Journal of the Linnean Society, 2003, 79, 389,399. [source] Population Ecology of the Riparian Frog Eleutherodactylus cuneatus in CubaBIOTROPICA, Issue 3 2010Ansel Fong G. ABSTRACT A population of the poorly known riparian frog Eleutherodactylus cuneatus was studied for 1 yr along a mountain stream in eastern Cuba. We examined population structure, seasonal and daily activity, growth, and habitat use using mark-recapture and call-point counts. Juveniles were observed during all survey periods with a spike in March. Higher numbers of adults were present in May,July, associated with longer day length, warmer temperatures, and the onset of the rainy season. This was coincident with higher calling activity away from the stream, suggesting an increase in both reproductive and nonreproductive activity in the warmer months between May and September. The number of individuals peaked at 2000,2200 h, but high numbers of individuals were visible throughout the night. Lower activity levels were observed throughout the day. Population size estimates were 84,131 adults and 124,304 juveniles, with averages of 110 and 236 individuals, survival rates were high but capture probabilities were low for a 5-d period in March 2004. Growth rate was negatively related to the size of recaptured individuals, although decreases in growth rate were slight. Frogs were found either in the water (49.7%), or in the banks and on the ground adjacent to the stream where most individuals were found on the ground under the cover of rocks, leaf litter, or large palm fronds. These results provide baseline knowledge of E. cuneatus population dynamics and ecology needed for a rapid detection of any decline this population may undergo in the future. Abstract in Spanish is available at http://www.blackwell-synergy.com/loi/btp [source] | |||||||||||||