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Single Tree (single + tree)
Selected AbstractsDiversity of endophytic fungi of single Norway spruce needles and their role as pioneer decomposersMOLECULAR ECOLOGY, Issue 7 2001Michael M. Müller Abstract The diversity of endophytic fungi within single symptomless Norway spruce needles is described and their possible role as pioneer decomposers after needle detachment is investigated. The majority (90%) of all 182 isolates from green intact needles were identified as Lophodermium piceae. Up to 34 isolates were obtained from single needles. Generally, all isolates within single needles had distinct randomly amplified microsatellite (RAMS) patterns. Single trees may thus contain a higher number of L. piceae individuals than the number of their needles. To investigate the ability of needle endophytes to act as pioneer decomposers, surface-sterilized needles were incubated on sterile sand inoculated with autoclaved or live spruce forest humus layer. The dry weight loss of 13,17% found in needles after a 20-week incubation did not significantly differ between the sterilized and live treatments. Hence, fungi surviving the surface sterilization of needles can act as pioneer decomposers. A considerable portion of the needles remained green during the incubation. Brown and black needles, in which the weight loss had presumably taken place, were invaded throughout by single haplotypes different from L. piceae. Instead, Tiarasporella parca, a less common needle endophyte, occurred among these invaders of brown needles. Needle endophytes of Norway spruce seem thus to have different abilities to decompose host tissues after needle cast. L. piceae is obviously not an important pioneer decomposer of Norway spruce needles. The diversity of fungal individuals drops sharply when needles start to decompose. Thus, in single needles the decomposing mycota is considerably less diverse than the endophytic mycota. [source] Ontogenetically stable hydraulic design in woody plantsFUNCTIONAL ECOLOGY, Issue 2 2006J. S. WEITZ Summary 1An important component of plant water transport is the design of the vascular network, including the size and shape of water-conducting elements or xylem conduits. 2For over 100 years, foresters and plant physiologists have recognized that these conduits are consistently smaller near branch tips compared with major branches and the main stem. Empirical data, however, have rarely been assembled to assess the whole-plant hydraulic architecture of woody plants as they age and grow. 3In this paper, we analyse vessels of Fraxinus americana (White Ash) within a single tree. Vessels are measured from cross-sections that span 12 m in height and 18 years' growth. 4We show that vessel radii are determined by distance from the top of the tree, as well as by stem size, independently of tree height or age. 5The qualitative form for the scaling of vessel radii agrees remarkably well with simple power laws, suggesting the existence of an ontogenetically stable hydraulic design that scales in the same manner as a tree grows in height and diameter. 6We discuss the implications of the present findings for optimal theories of hydraulic design. [source] Discrete-time survival treesTHE CANADIAN JOURNAL OF STATISTICS, Issue 1 2009Imad Bou-hamad MSC 2000: Primary 62N99; secondary 62G08 Abstract Tree-based methods are frequently used in studies with censored survival time. Their structure and ease of interpretability make them useful to identify prognostic factors and to predict conditional survival probabilities given an individual's covariates. The existing methods are tailor-made to deal with a survival time variable that is measured continuously. However, survival variables measured on a discrete scale are often encountered in practice. The authors propose a new tree construction method specifically adapted to such discrete-time survival variables. The splitting procedure can be seen as an extension, to the case of right-censored data, of the entropy criterion for a categorical outcome. The selection of the final tree is made through a pruning algorithm combined with a bootstrap correction. The authors also present a simple way of potentially improving the predictive performance of a single tree through bagging. A simulation study shows that single trees and bagged-trees perform well compared to a parametric model. A real data example investigating the usefulness of personality dimensions in predicting early onset of cigarette smoking is presented. The Canadian Journal of Statistics 37: 17-32; 2009 © 2009 Statistical Society of Canada Arbres de survie à temps discret Les méthodes d'arbres sont fréquemment utilisées lors d'études impliquant des données censurées. La structure d'un arbre ainsi que la facilité avec laquelle il peut être interprété font de lui un outil utile afin d'identifier des facteurs de pronostique et de prédire les probabilités de survie conditionnelles d'un individu étant donné ses covariables. Les méthodes existantes ont été développées pour traiter une variable temporelle continue. En pratique, il arrive fréquemment que la variable mesurant le temps de survie soit mesurée selon une échelle discrète. Les auteurs proposent une nouvelle méthode pour construire un arbre qui est spécialement adaptée aux variables de survie à temps discret. Le critère de division peut être vu comme étant une extension, au cas de censure à droite, du critère d'entropie pour une variable catégorielle. La sélection de l'arbre final est basée sur une méthode d'élagage combinée avec une correction bootstrap. Les auteurs présentent également une méthode simple pour améliorer, potentiellement, la performance d'un seul arbre avec le bagging. Une étude par simulation montre que des arbres seuls et des arbres "baggés" performent bien comparativement à un modèle paramétrique. Les auteurs présentent aussi une illustration de la nouvelle méthode avec des vraies données qui investiguent l'utilité d'utiliser des dimensions de la personnalité afin de prévoir le début de l'utilisation de la cigarette. La revue canadienne de statistique 37: 17-32; 2009 © 2009 Société statistique du Canada [source] Higher-level phylogeny of the Ithomiinae (Lepidoptera: Nymphalidae): classification, patterns of larval hostplant colonization and diversificationCLADISTICS, Issue 4 2006Keith R. Willmott We present a higher-level phylogenetic hypothesis for the diverse neotropical butterfly subfamily Ithomiinae, inferred from one of the largest non-molecular Lepidoptera data sets to date, including 106 species (105 ingroup) and 353 characters (306 informative) from adult and immature stage morphology and ecology. Initial analyses resulted in 1716 most parsimonious trees, which were reduced to a single tree after successive approximations character weighting. The inferred phylogeny was broadly consistent with other past and current work. Although some deeper relationships are uncertain, tribal-level clades were generally strongly supported, with two changes required to existing classification. The tribe Melinaeini is polyphyletic and Athesis + Patricia require a new tribe. Methona should be removed from Mechanitini into the restored tribe Methonini. Dircennini was paraphyletic in analyses of all data but monophyletic based on adult morphology alone, and its status remains to be confirmed. Hypothyris, Episcada, Godyris, Hypoleria and Greta are paraphyletic. A simulation analysis showed that relatively basal branches tended to have higher partitioned Bremer support for immature stage characters. Larval hostplant records were optimized on to a reduced, generic-level phylogeny and indicate that ithomiines moved from Apocynaceae to Solanaceae twice, or that Tithoreini re-colonized Apocynaceae after a basal shift to Solanaceae. Ithomiine clades have specialized on particular plant clades suggesting repeated colonization of novel hostplant niches consistent with adaptive radiation. The shift to Solanum, comprising 70% of neotropical Solanaceae, occurs at the base of a clade containing 89% of all ithomiines, and is interpreted as the major event in the evolution of ithomiine larval hostplant relationships. © The Willi Hennig Society 2006. [source] Phylogeny of the Pantomorus,Naupactus complex based on morphological and molecular data (Coleoptera: Curculionidae)CLADISTICS, Issue 2 2005María A. Scataglini The Pantomorus,Naupactus complex is a Neotropical group of broad-nosed weevils (Coleoptera: Curculionidae) including several parthenogenetic species usually assigned to the genera Naupactus Dejean, Pantomorus Schoenherr, Asynonychus Crotch, Aramigus Horn, Eurymetopus Schoenherr and Graphognathus Buchanan. Sixteen species were studied to test hypotheses on the monophyly of these genera, and on the origin of the parthenogenetic lineages. A matrix of 30 morphological characters and 999 positions of the Cytochrome Oxidase I gene, was analyzed with separate partitions and simultaneously, under equal and implied weights, and with different transversion/transitions costs. The ILD test indicates that the incongruence between the molecular and morphological data is not significant. Under equal weights, the molecular data resulted in a single tree and morphology in 34 trees; under implied weights morphology gave a different tree, and under TV:TS ,,4:1 molecular and combined analyses resulted in the same optimal tree. According to the latter, Naupactus includes Graphognathus, and is thus paraphyletic and basal regarding remaining genera, Pantomorus is polyphyletic and includes Aramigus and Asynonychus, and Eurymetopus is monophyletic. The species in which apomictic parthenogenesis has been verified (Aramigus tessellatus, Asynonychus cervinus and Graphognathus lecuoloma), belong to different clades of the Pantomorus-Naupactus complex, with basal sexual relatives. © The Willi Hennig Society 2005. [source] Single host trees in a closed forest canopy matrix: a highly fragmented landscape?JOURNAL OF APPLIED ENTOMOLOGY, Issue 9-10 2007J. Müller Abstract:, Whether trees represent habitat islands and therefore are influenced by similar biogeographic processes as ,real' islands is controversial. For trees in highly fragmented landscapes the impacts of spatial isolation on arthropod communities have already been demonstrated. However, we have almost no evidence that in large forests the arthropod communities on single trees in a closed canopy matrix are influenced by similar processes. In the present study the influence of spatial isolation on the specialized oak crown fauna was analysed in a large broadleaved forest area in northern Bavaria, Germany. The dependence of specialists on the proportion of oaks in the surrounding forest was investigated by using flight interception traps (67 on oak, 19 on beech). As target species, saproxylic and herbivorous Coleoptera and Heteroptera were sampled. The following two hypotheses were tested: (1) The proportion of oak specialists differs for oaks in beech forests and oaks in oak forests. (2) The proportion of oak specialists increases with the proportion of oaks in the surrounding forest. For all species groups, the proportion of oak specialists was higher in oak crowns than in beech crowns. Herbivorous beetles and true bugs showed a higher proportion of specialists in oak forests than on single oaks in beech forests. The proportion of herbivorous oak specialists increased significantly with increasing numbers of adjacent oak trees, while saproxylic Coleoptera showed no relationship to oak density. For herbivorous Coleoptera a threshold of higher proportion occurred where >30% oak was present, and for Heteroptera a first threshold was identified at values >70% and a second at >30%. This indicates that larger habitat patches within a closed forest canopy matrix support larger populations of herbivorous oak specialists. Hence, similar effects of spatial isolation might occur in a closed forest as have already been shown for highly fragmented open landscapes. [source] Discrete-time survival treesTHE CANADIAN JOURNAL OF STATISTICS, Issue 1 2009Imad Bou-hamad MSC 2000: Primary 62N99; secondary 62G08 Abstract Tree-based methods are frequently used in studies with censored survival time. Their structure and ease of interpretability make them useful to identify prognostic factors and to predict conditional survival probabilities given an individual's covariates. The existing methods are tailor-made to deal with a survival time variable that is measured continuously. However, survival variables measured on a discrete scale are often encountered in practice. The authors propose a new tree construction method specifically adapted to such discrete-time survival variables. The splitting procedure can be seen as an extension, to the case of right-censored data, of the entropy criterion for a categorical outcome. The selection of the final tree is made through a pruning algorithm combined with a bootstrap correction. The authors also present a simple way of potentially improving the predictive performance of a single tree through bagging. A simulation study shows that single trees and bagged-trees perform well compared to a parametric model. A real data example investigating the usefulness of personality dimensions in predicting early onset of cigarette smoking is presented. The Canadian Journal of Statistics 37: 17-32; 2009 © 2009 Statistical Society of Canada Arbres de survie à temps discret Les méthodes d'arbres sont fréquemment utilisées lors d'études impliquant des données censurées. La structure d'un arbre ainsi que la facilité avec laquelle il peut être interprété font de lui un outil utile afin d'identifier des facteurs de pronostique et de prédire les probabilités de survie conditionnelles d'un individu étant donné ses covariables. Les méthodes existantes ont été développées pour traiter une variable temporelle continue. En pratique, il arrive fréquemment que la variable mesurant le temps de survie soit mesurée selon une échelle discrète. Les auteurs proposent une nouvelle méthode pour construire un arbre qui est spécialement adaptée aux variables de survie à temps discret. Le critère de division peut être vu comme étant une extension, au cas de censure à droite, du critère d'entropie pour une variable catégorielle. La sélection de l'arbre final est basée sur une méthode d'élagage combinée avec une correction bootstrap. Les auteurs présentent également une méthode simple pour améliorer, potentiellement, la performance d'un seul arbre avec le bagging. Une étude par simulation montre que des arbres seuls et des arbres "baggés" performent bien comparativement à un modèle paramétrique. Les auteurs présentent aussi une illustration de la nouvelle méthode avec des vraies données qui investiguent l'utilité d'utiliser des dimensions de la personnalité afin de prévoir le début de l'utilisation de la cigarette. La revue canadienne de statistique 37: 17-32; 2009 © 2009 Société statistique du Canada [source] Key tree species for the golden-headed lion tamarin and implications for shade-cocoa management in southern Bahia, BrazilANIMAL CONSERVATION, Issue 1 2010L. C. Oliveira Abstract The golden-headed lion tamarin Leontopithecus chrysomelas occurs in the Atlantic forest of southern Bahia, Brazil, where shade-cocoa agroforestry (known as cabruca) predominates. The economic decline of the cocoa industry has caused many landowners to convert cabruca into cattle pasture or diversify their plantations with other crops. These and prior anthropogenic disturbances such as habitat fragmentation are threatening lion tamarin persistence. For some lion tamarin groups, cabruca comprises a large part of their home range. Considering these factors, the maintenance of the biological diversity in cabruca favorable to golden-headed lion tamarins is of considerable interest to their long-term survival. Here we identify plant species that provide food and sleeping sites for the lion tamarins and examine their occurrence in cabruca plantations, in order to investigate alternatives for conservation management practices that benefit both lion tamarins and cabruca. We determined the total number of trees and the frequency of individuals and species used for food and sleeping sites by lion tamarins in Una Biological Reserve, Bahia, from 1998 to 2006. We used this information to compare the richness and frequency of use across habitats (cabruca, mature and secondary) and to create a ranking index considering various components of a tree species' utility to the lion tamarins. Lion tamarins used 155 tree species, 93 for food and 93 for sleeping sites. Fifty-five species were ranked as ,Extremely Valuable,' eight as ,Valuable' and 92 as ,Of Interest.' Of 48 families, Myrtaceae and Sapotaceae were used the most. Cabruca contained fewer individual trees used by lion tamarins, but the highest frequency of use per tree compared with other habitats, indicating the large influence of single trees in these plantations. Using the key tree species identified in our study in the management of cabruca would be of considerable benefit to the long-term survival of lion tamarins [source] | ||||||||||