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Significant Fluctuations (significant + fluctuation)
Selected AbstractsMonitoring of protein profiles for the optimization of recombinant fermentation processes using public domain databasesELECTROPHORESIS, Issue 1-2 2003Karin Dürrschmid Abstract The expression of human superoxide dismutase in fed-batch fermentation of E. coli HMS174(DE3)(pET3ahSOD) was studied as model system. Due to the frequently used strong T7 promoter system a high metabolic load is exerted, which triggers stress response mechanisms and finally leads to the differentiation of the host cell. As a consequence, host cell metabolism is partly shifted from growth to survival accompanied by significant alterations of the protein pattern. In terms of process optimization two-dimensional electrophoresis deserves as a powerful tool to monitor these changes on protein level. For the analysis of samples derived from different states of recombinant protein production wide-range Immobiline Dry Strips pH 3,10 were used. In order to establish an efficient procedure for accelerated process optimization and to avoid costly and time-consuming analysis like mass spectrometry (MS), a database approach for the identification of significant changes of the protein pattern was evaluated. On average, 935 spots per gel were detected, whereby 50 are presumably stress-relevant. Out of these, 24 proteins could be identified by using the SWISS-2DPAGE database (www.expasy.ch/ch2d/). The identified proteins are involved in regulatory networks, energy metabolism, purine and pyrimidine nucleotide synthesis and translation. By this database approach, significant fluctuations of individual proteins in relation to recombinant protein production could be identified. Seven proteins show strong alterations (>100%) directly after induction and can therefore be stated as reliable marker proteins for the assessment of stress response. For distinctive interpretation of this highly specific information, a bioinformatic and statistic tool would be essential in order to perceive the role and contribution of individual proteins in stress response. [source] Are diatoms good integrators of temporal variability in stream water quality?FRESHWATER BIOLOGY, Issue 4 2008ISABELLE LAVOIE Summary 1. Although diatoms have been used for many decades for river monitoring around the world, studies showing evidence that diatoms integrate temporal variability in water chemistry are scarce. 2. The purpose of this study was to evaluate the response of the Eastern Canadian Diatom Index (IDEC: Indice Diatomées de l'Est du Canada) with respect to temporal water chemistry variability using three different spatio-temporal data sets. 3. Along a large phosphorus gradient, the IDEC was highly correlated with averaged water chemistry data. Along within-stream phosphorus gradients, the IDEC integrated phosphorus over various periods of time, depending on the trophic status of the site studied (Boyer, Nicolet or Ste. Anne river) and variability in nutrient concentration. 4. In the Ste. Anne River, where nutrient concentrations were low and generally stable, an input of phosphorus induced a rapid change in diatom community structure and IDEC value within the following week. In the mesotrophic Nicolet River, the observed integration period was approximately 2 weeks. Diatom communities in the eutrophic Boyer River appeared to be adapted to frequent and significant fluctuations in nutrient concentrations. In this system, the IDEC therefore showed a slower response to short term fluctuations and integrated nutrient concentrations over a period of 5 weeks. 5. Our results suggest that the integration period varies as a function of trophic status and nutrient concentration variability in the streams. Oligotrophic streams are more sensitive to nutrient variations and their diatom communities are directly altered by nutrient increase, while diatom communities of eutrophic rivers are less sensitive to nutrient fluctuations and major variations take a longer time to be integrated into index values. 6. The longer integration period in the eutrophic environment may be attributed to the complexity of the diatom community. The results from this study showed that the diversity and evenness of the communities increased with trophic status. [source] Seismicity in a model governed by competing frictional weakening and healing mechanismsGEOPHYSICAL JOURNAL INTERNATIONAL, Issue 3 2009G. Hillers SUMMARY Observations from laboratory, field and numerical work spanning a wide range of space and time scales suggest a strain dependent progressive evolution of material properties that control the stability of earthquake faults. The associated weakening mechanisms are counterbalanced by a variety of restrengthening mechanisms. The efficiency of the healing processes depends on local material properties and on rheologic, temperature, and hydraulic conditions. We investigate the relative effects of these competing non-linear feedbacks on seismogenesis in the context of evolving frictional properties, using a mechanical earthquake model that is governed by slip weakening friction. Weakening and strengthening mechanisms are parametrized by the evolution of the frictional control variable,the slip weakening rate R,using empirical relationships obtained from laboratory experiments. In our model, weakening depends on the slip of an earthquake and tends to increase R, following the behaviour of real and simulated frictional interfaces. Healing causes R to decrease and depends on the time passed since the last slip. Results from models with these competing feedbacks are compared with simulations using non-evolving friction. Compared to fixed R conditions, evolving properties result in a significantly increased variability in the system dynamics. We find that for a given set of weakening parameters the resulting seismicity patterns are sensitive to details of the restrengthening process, such as the healing rate b and a lower cutoff time, tc, up to which no significant change in the friction parameter is observed. For relatively large and small cutoff times, the statistics are typical of fixed large and small R values, respectively. However, a wide range of intermediate values leads to significant fluctuations in the internal energy levels. The frequency-size statistics of earthquake occurrence show corresponding non-stationary characteristics on time scales over which negligible fluctuations are observed in the fixed- R case. The progressive evolution implies that,except for extreme weakening and healing rates,faults and fault networks possibly are not well characterized by steady states on typical catalogue time scales, thus highlighting the essential role of memory and history dependence in seismogenesis. The results suggest that an extrapolation to future seismicity occurrence based on temporally limited data may be misleading due to variability in seismicity patterns associated with competing mechanisms that affect fault stability. [source] Frequency response analysis of slot coatingAICHE JOURNAL, Issue 9 2010Takeaki Tsuda Abstract Frequency responses to the slot die coating process is analyzed using empirical modal analysis to predict the effects of periodic process disturbances such as gap oscillation and variations in vacuum pressure, web velocity, and flow rate. A type of empirical modal analysis known as an experimental modal approach was used, and an oscillator basis model was assumed by using a linearized governing equation, and the coefficient of the basis model was determined by curve-fitting. By completing the process, we were able to decompose each mode, during which process it was found that the modes are of two types: a squeeze mode related to viscous characteristics and sinuous modes that are identical to capillary waves. Observation of the meniscus shapes of each mode revealed, in the third mode near the lip edge, significant fluctuations that can induce other coating defects. © 2010 American Institute of Chemical Engineers AIChE J, 2010 [source] PERMEABILITY ANISOTROPY DISTRIBUTIONS IN AN UPPER JURASSIC CARBONATE RESERVOIR, EASTERN SAUDI ARABIAJOURNAL OF PETROLEUM GEOLOGY, Issue 2 2007A. Sahin Most classical reservoir engineering concepts are based on homogeneous reservoirs despite the fact that homogeneous reservoirs are the exception rather than the rule. This is especially true of carbonate reservoirs in the Middle East which are known to be highly heterogeneous. The realistic petrophysical characterization of these kinds of reservoirs is not an easy task and must include the study of directional variations of permeability. Such variation can be incorporated into engineering calculations as the square root of the ratio of horizontal to vertical permeability, a parameter known as the anisotropy ratio. This paper addresses the distribution of anisotropy ratio values in an Upper Jurassic carbonate reservoir in the Eastern Province of Saudi Arabia. Based on whole core data from a number of vertical wells, statistical distributions of horizontal and vertical permeability measurements as well as anisotropy ratios were determined. The distributions of both permeability measurements and anisotropy ratios have similar patterns characterized by considerable positive skewness. The coefficients of variation for these distributions are relatively high, indicating their very heterogeneous nature. Comparison of plots of anisotropy ratios against depth for the wells and the corresponding core permeability values indicate that reservoir intervals with lower vertical permeability yield consistently higher ratios with considerable fluctuations. These intervals are represented by lower porosity mud-rich and/or mud-rich/granular facies. Granular facies, on the other hand, yielded considerably lower ratios without significant fluctuations. [source] Compatibility of Automatic Threshold Tracking Pacemakers with Previously Implanted Pacing Leads in ChildrenPACING AND CLINICAL ELECTROPHYSIOLOGY, Issue 11 2002OSMAN KUCUKOSMANOGLU KUCUKOSMANOGLU, O., et al.: Compatibility of Automatic Threshold Tracking Pacemakers with Previously Implanted Pacing Leads in Children. The Autocapture function controls and optimizes the amplitude of the pacing pulse and saves energy. The manufacturer recommends using a special low polarization, low threshold bipolar Pacesetter lead for the Autocapture function. The purpose of this study was to evaluate the compatibility of Autocapture with previously implanted pacing leads. The study included 15 patients (mean age 13.6 ± 3.4 years) who needed pulse generator replacement and received the VVIR pacemaker Regency SR+ or the DDDR pacemakers Affinity DR or Integrity DR with the Autocapture function. The new pulse generators connected to previously implanted ventricular leads. At the time of implantation the pacing threshold was 1.0 ± 0.35 V at 0.5 ms, the lead impedance was 580 ± 80 ,, and the spontaneous R wave amplitude was 7.89 ± 4.89 mV. The polarization signal (PS) was 3.8 ± 3.04 mV, and evoked response (ER) was 8.15 ± 4.57 mV at the predischarge testing. Follow-up telemetry was done at months 1, 3, 6, 12, and 18. The follow-up duration was 9.4 ± 5 months (range 1,18 months). If the results of PS and ER measurements were acceptable for Autocapture, it turned on at the 1-month visit. In six (40%) patients the results were found acceptable for Autocapture function. Age, lead impedance, pacing threshold, intrinsic R wave measurement, lead age, fixation mechanism, and ER measurements were not statistically different in Autocapture suitable and not suitable groups. The main reason not to activate Autocapture had been increased PS. Any significant fluctuations were not observed in pacing threshold, lead impedance, ER, and PS during follow-up. In conclusion, previously implanted pacing leads may be compatible with the Autocapture function. [source] Microsecond Protein Dynamics Measured by 13C, Rotating-Frame Spin RelaxationCHEMBIOCHEM, Issue 9 2005Patrik Lundström Abstract NMR spin relaxation in the rotating frame (R1,) is a unique method for atomic-resolution characterization of conformational (chemical) exchange processes occurring on the microsecond timescale. We present a rotating-frame13C,relaxation dispersion experiment for measuring conformational dynamics in uniformly13C-labeled proteins. The experiment was validated by using the E140Q mutant of the C-terminal fragment of calmodulin, which exhibits significant conformational exchange between two major conformations, as gauged from previous15N and1H relaxation studies. Consistent with previous work, the present13C, R1,experiment detects conformational-exchange dynamics throughout the protein. The average correlation time of ,,ex,=25±8 ,s is in excellent agreement with those determined previously from1H and15N R1,relaxation data: ,,ex,=19±7 and 21±3 ,s, respectively. The extracted chemical-shift differences between the exchanging states reveal significant fluctuations in dihedral angles within single regions of Ramachandran ,,, space, that were not identified from the1H and15N relaxation data. The present results underscore the advantage of using several types of nuclei to probe exchange dynamics in biomolecules. [source] | ||||||||||||||||