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Shape Variation (shape + variation)
Selected AbstractsQUANTITATIVE ANALYSIS OF SHAPE VARIATION IN TYPE AND MODERN POPULATIONS OF MERIDION (BACILLARIOPHYCEAE)JOURNAL OF PHYCOLOGY, Issue 1 2001Kristina M. Rhode Subtle differences in valve morphology can indicate sexually isolated populations in diatoms (Bacillariophyceae). Shape descriptors, like Legendre coefficients, have been used to quantify differences in valve outline so that morphologically distinct groups can be recognized. Legendre coefficients were used as shape descriptors to quantify differences in valve outline among five populations in the genus Meridion Ag. Two novel populations of Meridion from North America, a North American population of M. constrictum Ralfs, type material for M. circulare (Greve.) Ag., and type material of M. constrictum were included in this analysis. Results of a principle components analysis and discriminate analyses on the shape descriptors of all five populations support the hypotheses that the two novel North American populations are undescribed taxa within Meridion and that the North American M. constrictum can be considered Meridion constrictum sensu stricto. A new taxon, Meridion hohii Rhode, is described. There appears to be greater diversity within the genus Meridion than is currently recognized. [source] QUANTITATIVE GENETICS OF PLASTRON SHAPE IN SLIDER TURTLES (TRACHEMYS SCRIPTA)EVOLUTION, Issue 3 2006Erin M. Myers Abstract Shape variation is widespread in nature and embodies both a response to and a source for evolution and natural selection. To detect patterns of shape evolution, one must assess the quantitative genetic underpinnings of shape variation as well as the selective environment that the organisms have experienced. Here we used geometric morphometrics to assess variation in plastron shell shape in 1314 neonatal slider turtles (Trachemys scripta) from 162 clutches of laboratory-incubated eggs from two nesting areas. Multivariate analysis of variance indicated that nesting area has a limited role in describing plastron shape variation among clutches, whereas differences between individual clutches were highly significant, suggesting a prominent clutch effect. The covariation between plastron shape and several possible maternal effect variables (yolk hormone levels and egg dimensions) was assessed for a subset of clutches and found to be negligible. We subsequently employed several recently proposed methods for estimating heritability from shape variables, and generalized a univariate approach to accommodate unequal sample sizes. Univariate estimates of shape heritability based on Procrustes distances yielded large values for both nesting populations (h2, 0.86), and multivariate estimates of maximal additive heritability were also large for both nesting populations (h2max, 0.57). We also estimated the dominant trend in heritable shape change for each nesting population and found that the direction of shape evolution was not the same for the two sites. Therefore, although the magnitude of shape evolution was similar between nesting populations, the manner in which plastron shape is evolving is not. We conclude that the univariate approach for assessing quantitative genetic parameters from geometric morphometric data has limited utility, because it is unable to accurately describe how shape is evolving. [source] Diatomaceous Lessons in Nanotechnology and Advanced MaterialsADVANCED MATERIALS, Issue 29 2009Dusan Losic Abstract Silicon, in its various forms, finds widespread use in electronic, optical, and structural materials. Research on uses of silicon and silica has been intense for decades, raising the question of how much diversity is left for innovation with this element. Shape variation is particularly well examined. Here, we review the principles revealed by diatom frustules, the porous silica shells of diatoms, microscopic, unicellular algae. The frustules have nanometer-scale detail, and the almost 100,000 species with unique frustule morphologies suggest nuanced structural and optical functions well beyond the current ranges used in advanced materials. The unique frustule morphologies have arisen through tens of millions of years of evolutionary selection, and so are likely to reflect optimized design and function. Performing the structural and optical equivalent of data mining, and understanding and adopting these designs, affords a new paradigm in materials science, an alternative to combinatorial materials synthesis approaches in spurring the development of new material and more nuanced materials. [source] Historical and ecological correlates of body shape in the brook stickleback, Culaea inconstansBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 4 2009JESSICA LYN WARD Using geometric morphometric methods, we evaluated the correlation between phenotypic variation and available historical and habitat information for two genetically differentiated, allopatric lineages of a widespread North American species, the brook stickleback (Culaea inconstans). The results obtained revealed strong patterns of structured phenotypic differentiation across the species range with extreme phenotypes occurring at the northwest and southeast range boundaries. Shape variation was broadly congruent with the distribution of two mitochondrial DNA lineages; a deep-bodied eastern form (Atlantic refugium) and a slim-bodied western form (Mississippian refugium); however, the two forms were not lineage-specific and phenotypic cladistic diversification is likely to be an artefact of underlying clinal variation associated with longitudinal and latitudinal gradients. In addition, we found little evidence of diagnosable lake and river forms across North America. Taken together, large-scale patterns of phenotypic diversity observed in C. inconstans suggest that relatively recent factors, such as continually varying natural selection across the range and/or potential local gene flow, may substantially mitigate the effects of historical separation or a generalized adaptive response to alternative habitats. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 96, 769,783. [source] Morphological variation of the five vole species of the genus Microtus (Mammalia, Rodentia, Arvicolinae) occurring in GreeceACTA ZOOLOGICA, Issue 3 2009Stella E. Fraguedakis-Tsolis Abstract Morphometric data for the five vole species of the genus Microtus living in Greece are old, sparse, poor and insufficiently analysed. This work aims to give the first comprehensive morphometric analysis of body and skull inter- and intraspecific variation for M. (M.) guentheri, M. (M.) rossiaemeridionalis, M. (Terricola) subterraneus, M. (T.) felteni and M. (T.) thomasi, applying multivariate statistics to 28 linear morphometric variables. It was based on ample material (202 adult individuals) using samples from localities that adequately cover the entire distributional range of each species in Greece. The five species and the two subgenera (Microtus and Terricola) were morphometrically clearly distinguished and discriminating variables were revealed. However, morphometrics did not provide robust criteria to infer phylogenetic relations among species. Furthermore, three species, M. (M.) guentheri, M. (M.) rossiaemeridionalis and M. (T.) thomasi, exhibited considerable intraspecific size or shape variation, which was mostly random and not associated with geographical proximity. Comparisons with data in the literature, mainly concerning populations of these species from adjacent areas, indicate that the Greek M. (M.) guentheri, M. (M.) rossiaemeridionalis and M. (T.) thomasi tend to be smaller than their conspecifics, while M. (T.) subterraneus and M. (T.) felteni are about equal in size to their Balkan relatives. [source] RELATIVE ROLE OF GENETIC DETERMINATION AND PLASTIC RESPONSE DURING ONTOGENY FOR SHELL-SHAPE TRAITS SUBJECTED TO DIVERSIFYING SELECTIONEVOLUTION, Issue 5 2009Paula Conde-Padín We studied the relative role of genetic determination versus plastic response for traits involved in ecological adaptation of two ecotypes of Littorina saxatilis living at different shore levels. To investigate the magnitude of the plastic response across ontogeny, we compared morphological data from individuals grown in the laboratory and taken from the wild at three developmental stages: shelled embryos, juveniles, and adults. The results indicate that most shell shape variation (72,99%) in adaptive traits (globosity and aperture of the shell) is explained by the ecotype irrespective of the growth environment, suggesting that direct genetic determination is the main factor responsible for the process of adaptation in the wild. There was a tendency for the contribution of plasticity to increase over ontogeny but, in general, the direction of the plastic response did not suggest that this was adaptive. [source] QUANTITATIVE GENETICS OF PLASTRON SHAPE IN SLIDER TURTLES (TRACHEMYS SCRIPTA)EVOLUTION, Issue 3 2006Erin M. Myers Abstract Shape variation is widespread in nature and embodies both a response to and a source for evolution and natural selection. To detect patterns of shape evolution, one must assess the quantitative genetic underpinnings of shape variation as well as the selective environment that the organisms have experienced. Here we used geometric morphometrics to assess variation in plastron shell shape in 1314 neonatal slider turtles (Trachemys scripta) from 162 clutches of laboratory-incubated eggs from two nesting areas. Multivariate analysis of variance indicated that nesting area has a limited role in describing plastron shape variation among clutches, whereas differences between individual clutches were highly significant, suggesting a prominent clutch effect. The covariation between plastron shape and several possible maternal effect variables (yolk hormone levels and egg dimensions) was assessed for a subset of clutches and found to be negligible. We subsequently employed several recently proposed methods for estimating heritability from shape variables, and generalized a univariate approach to accommodate unequal sample sizes. Univariate estimates of shape heritability based on Procrustes distances yielded large values for both nesting populations (h2, 0.86), and multivariate estimates of maximal additive heritability were also large for both nesting populations (h2max, 0.57). We also estimated the dominant trend in heritable shape change for each nesting population and found that the direction of shape evolution was not the same for the two sites. Therefore, although the magnitude of shape evolution was similar between nesting populations, the manner in which plastron shape is evolving is not. We conclude that the univariate approach for assessing quantitative genetic parameters from geometric morphometric data has limited utility, because it is unable to accurately describe how shape is evolving. [source] SHAPE ANALYSIS OF SYMMETRIC STRUCTURES: QUANTIFYING VARIATION AMONG INDIVIDUALS AND ASYMMETRYEVOLUTION, Issue 10 2002Christian Peter Klingenberg Abstract., Morphometric studies often consider parts with internal left-right symmetry, for instance, the vertebrate skull. This type of symmetry is called object symmetry and is distinguished from matching symmetry, in which two separate structures exist as mirror images of each other, one on each body side. We explain a method for partitioning the total shape variation of landmark configurations with object symmetry into components of symmetric variation among individuals and asymmetry. This method is based on the Procrustes superimposition of the original and a reflected copy of each landmark configuration and is compatible with the two-factor ANOVA model customary in studies of fluctuating asymmetry. We show a fully multivariate framework for testing the effects in the two-factor model with MANOVA statistics, which also applies to shapes with matching symmetry. We apply the new methods in a small case study of pharyngeal jaws of the Neotropical cichlid fish Amphilophus citrinellus. The analysis revealed that the symmetric component of variation in the pharyngeal jaws is dominated by the contrast between two alternative trophic morphs in this species and that there is subtle but statistically significant directional asymmetry. Finally, we provide some general recommendations for morphometric studies of symmetric shapes. [source] Morphological variation over ontogeny and environments in resource polymorphic arctic charr (Salvelinus alpinus)EVOLUTION AND DEVELOPMENT, Issue 3 2010Kevin J. Parsons SUMMARY Natural selection requires genetically based phenotypic variation to facilitate its action and cause adaptive evolution. It has become increasingly recognized that morphological development can become canalized likely as a result of selection. However, it is largely unknown how selection may influence canalization over ontogeny and differing environments. Changes in environments or colonization of a novel one is expected to result in adaptive divergence from the ancestral population when selection favors a new phenotypic optimum. In turn, a novel environment may also expose variation previously hidden from natural selection. We tested for changes in phenotypic variation over ontogeny and environments among ecomorphs of Arctic charr (Salvelinus alpinus) from two Icelandic lakes. Populations represented varying degrees of ecological specialization, with one lake population possessing highly specialized ecomorphs exhibiting a large degree of phenotypic divergence, whereas the other displayed more subtle divergence with more ecological overlap. Here we show that ecomorphs hypothesized to be the most specialized in each lake possess significant reductions in shape variation over ontogeny regardless of environmental treatment suggesting canalized development. However, environments did change the amount of shape variation expressed in these ecomorphs, with novel environments slowing the rate at which variation was reduced over ontogeny. Thus, environmental conditions may play an important role in determining the type and amount of genetically based phenotypic variation exposed to natural selection. [source] Modularity of the rodent mandible: Integrating bones, muscles, and teethEVOLUTION AND DEVELOPMENT, Issue 6 2008Miriam Leah Zelditch Summary Several models explain how a complex integrated system like the rodent mandible can arise from multiple developmental modules. The models propose various integrating mechanisms, including epigenetic effects of muscles on bones. We test five for their ability to predict correlations found in the individual (symmetric) and fluctuating asymmetric (FA) components of shape variation. We also use exploratory methods to discern patterns unanticipated by any model. Two models fit observed correlation matrices from both components: (1) parts originating in same mesenchymal condensation are integrated, (2) parts developmentally dependent on the same muscle form an integrated complex as do those dependent on teeth. Another fits the correlations observed in FA: each muscle insertion site is an integrated unit. However, no model fits well, and none predicts the complex structure found in the exploratory analyses, best described as a reticulated network. Furthermore, no model predicts the correlation between proximal parts of the condyloid and coronoid, which can exceed the correlations between proximal and distal parts of the same process. Additionally, no model predicts the correlation between molar alveolus and ramus and/or angular process, one of the highest correlations found in the FA component. That correlation contradicts the basic premise of all five developmental models, yet it should be anticipated from the epigenetic effects of mastication, possibly the primary morphogenetic process integrating the jaw coupling forces generated by muscle contraction with those experienced at teeth. [source] Geographical and taxonomic influences on cranial variation in red colobus monkeys (Primates, Colobinae): introducing a new approach to ,morph' monkeysGLOBAL ECOLOGY, Issue 2 2009Andrea Cardini ABSTRACT Aim, To provide accurate but parsimonious quantitative descriptions of clines in cranial form of red colobus, to partition morphological variance into geographical, taxonomic and structured taxonomic components, and to visually summarize clines in multivariate shape data using a method which produces results directly comparable to both univariate studies of geographical variation and standard geometric morphometric visualization of shape differences along vectors. Location, Equatorial Africa. Methods, Sixty-four three-dimensional cranial landmarks were measured on 276 adult red colobus monkeys sampled over their entire distribution. Geometric morphometric methods were applied, and size and shape variables regressed onto geographical coordinates using linear and curvilinear models. Model selection was done using the second-order Akaike information criterion. Components of variation related to geography, taxon or their combined effect were partitioned using partial regresssion. Multivariate trends in clinal shape were summarized using principal components of predictions from regressions, plotting vector scores on maps as for univariate size, and visualizing differences along main axes of clinal shape variation using surface rendering. Results, Significant clinal variation was found in size and shape. Clines were similar in females and males. Trend surface analysis tended to be more accurate and parsimonious than alternative models in predicting morphology based on geography. Cranial form was relatively paedomorphic in East Africa and peramorphic in central Africa. Most taxonomic variation was geographically structured. However, taxonomic differences alone accounted for a larger proportion of total explained variance in shape (up to 40%) than in size (, 20%). Main conclusions, A strong cline explained most of the observed size variation and a significant part of the shape differences of red colobus crania. The pattern of geographical variation was largely similar to that previously reported in vervets, despite different habitat preferences (arboreal versus terrestrial) and a long period since divergence (c. 14,15 Myr). This suggests that some aspects of morphological divergence in both groups may have been influenced by similar environmental, geographical and historical factors. Cranial size is likely to be evolutionarily more labile and thus better reflects the influence of recent environmental changes. Cranial shape could be more resilient to change and thus better reflects phylogenetically informative differences. [source] Plumage-based phylogenetic analyses of the Merops bee-eatersIBIS, Issue 3 2004D. BRENT BURT I review previous systematic work on the family Meropidae and present phylogenetic hypotheses derived from my analyses of colour, pattern and shape variation in 30 plumage regions among species and subspecies in this family. Consistent patterns are seen across shallow portions of the trees. Uncertainty remains concerning the placement of several deep branches within this group's phylogeny. In particular, the phylogenetic placement of Meropogon forsteni and Merops breweri, M. ornatus, M. hirundineus and M. boehmi remains uncertain. The biogeographical patterns in the resultant trees are similar with either a Southeast Asian or African origin for the family, with most of the early diversification occurring in Africa, and with multiple independent subsequent invasions of non-African areas. [source] Assessment of rampant genitalic variation in the spider genus Homalonychus (Araneae, Homalonychidae)INVERTEBRATE BIOLOGY, Issue 2 2009Sarah C. Crews Abstract. Animal genitalia are often complex and thought to vary little within species but differ between closely related species making them useful as primary characters in species diagnosis. Spiders are no exception, with nearly all of the 40,462 (at the time of this writing) described species differentiated by genitalic characteristics. However, in some cases, the genitalia of putative species are not uniform, but rather vary within species. When intraspecific variation overlaps interspecific variation, it can be difficult (if not impossible) to place a name on a specimen. The quantification of shape variation in genitalia has not often been attempted, probably because until recently it was not a methodologically and computationally simple process. In the two currently recognized species of the spider genus Homalonychus, genitalic variation is rampant in both male and female structures, with some parts of the genitalia (e.g., the retrolateral tibial apophysis) differing in each specimen examined. In this study, geometric morphometric analysis employing landmark data is used to quantify both intra- and interspecific variation in this genus. The large amount of variation is condensed into two or three groups depending on the structures examined, and these groups correspond to either the two species or to previously established mitochondrial DNA clades within one of the species. The results also show that analyses of female structures do not separate the groups as readily as the analyses of the male structures. The large amount of variation present in some structures is not correlated with geography or population genetic structure. [source] Feedbacks between community assembly and habitat selection shape variation in local colonizationJOURNAL OF ANIMAL ECOLOGY, Issue 4 2010Johanna M. Kraus Summary 1.,Non-consumptive effects of predators are increasingly recognized as important drivers of community assembly and structure. Specifically, habitat selection responses to top predators during colonization and oviposition can lead to large differences in aquatic community structure, composition and diversity. 2.,These differences among communities due to predators may develop as communities assemble, potentially altering the relative quality of predator vs. predator-free habitats through time. If so, community assembly would be expected to modify the subsequent behavioural responses of colonists to habitats containing top predators. Here, we test this hypothesis by manipulating community assembly and the presence of fish in experimental ponds and measuring their independent and combined effects on patterns of colonization by insects and amphibians. 3.,Assembly modified habitat selection of dytscid beetles and hylid frogs by decreasing or even reversing avoidance of pools containing blue-spotted sunfish (Enneacanthus gloriosus). However, not all habitat selection responses to fish depended on assembly history. Hydrophilid beetles and mosquitoes avoided fish while chironomids were attracted to fish pools, regardless of assembly history. 4.,Our results show that community assembly causes taxa-dependent feedbacks that can modify avoidance of habitats containing a top predator. Thus, non-consumptive effects of a top predator on community structure change as communities assemble and effects of competitors and other predators combine with the direct effects of top predators to shape colonization. 5.,This work reinforces the importance of habitat selection for community assembly in aquatic systems, while illustrating the range of factors that may influence colonization rates and resulting community structure. Directly manipulating communities both during colonization and post-colonization is critical for elucidating how sequential processes interact to shape communities. [source] Sexual dimorphism of head morphology in three-spined stickleback Gasterosteus aculeatusJOURNAL OF FISH BIOLOGY, Issue 4 2010W. E. Aguirre This study examined sexual dimorphism of head morphology in the ecologically diverse three-spined stickleback Gasterosteus aculeatus. Male G. aculeatus had longer heads than female G. aculeatus in all 10 anadromous, stream and lake populations examined, and head length growth rates were significantly higher in males in half of the populations sampled, indicating that differences in head size increased with body size in many populations. Despite consistently larger heads in males, there was significant variation in size-adjusted head length among populations, suggesting that the relationship between head length and body length was flexible. Inter-population differences in head length were correlated between sexes, thus population-level factors influenced head length in both sexes despite the sexual dimorphism present. Head shape variation between lake and anadromous populations was greater than that between sexes. The common divergence in head shape between sexes across populations was about twice as important as the sexual dimorphism unique to each population. Finally, much of the sexual dimorphism in head length was due to divergence in the anterior region of the head, where the primary trophic structures were found. It is unclear whether the sexual dimorphism was due to natural selection for niche divergence between sexes or sexual selection. This study improves knowledge of the magnitude, growth rate divergence, inter-population variation and location of sexual dimorphism in G. aculeatus head morphology. [source] Phenotypic variation among populations of Atherinops affinis(Atherinopsidae) with insights from a geometric morphometric analysisJOURNAL OF FISH BIOLOGY, Issue 4 2004K. M. O'Reilly Morphological character variation was examined in Atherinops affinis, a temperate marine silverside with a broad geographic range and presumed limited powers of dispersal. Populations of this species were sampled from three California mainland sites, one Channel Island site and one site in the upper Gulf of California. A geometric morphometric analysis yielded higher resolution in the assessment of phenotypic divergence among the four Pacific coast populations than either body measurement or meristic analysis, and it showed that most of the shape variation among these populations occurs in the head region and body depth of the fish. All three analyses supported the hypothesis that populations of A. affinis from central and southern California coastal waters and from Santa Catalina Island are morphologically distinct from each other; the Santa Catalina Island population was found to be the most divergent. On the basis of meristic characters alone, the population of A. affinis from the upper Gulf of California was different from A. affinis populations along the Pacific coast of California. The analyses revealed variation in several morphological characters, e.g. body depth and meristics, known to vary in association with environmental conditions. Given that A. affinis appears to have low among-population genetic variation, this species may be phenotypically plastic in response to the environmental conditions of the habitat of each population. [source] Chondrocranial development in larval Rana sylvatica (Anura: Ranidae): Morphometric analysis of cranial allometry and ontogenetic shape changeJOURNAL OF MORPHOLOGY, Issue 2 2002Peter M. Larson Abstract This study provides baseline quantitative data on the morphological development of the chondrocranium in a larval anuran. Both linear and geometric morphometric methods are used to quantitatively analyze size-related shape change in a complete developmental series of larvae of the wood frog, Rana sylvatica. The null hypothesis of isometry was rejected in all geometric morphometric and most linear morphometric analyses. Reduced major axis regressions of 11 linear chondrocranial measurements on size indicate a mixture of allometric and isometric scaling. Measurements in the otic and oral regions tend to scale with negative allometry and those associated with the palatoquadrate and muscular process scale with isometry or positive allometry. Geometric morphometric analyses, based on a set of 11 chondrocranial landmarks, include linear regression of relative warp scores and multivariate regression of partial warp scores and uniform components on log centroid size. Body size explains about one-quarter to one-third of the total shape variation found in the sample. Areas of regional shape transformation (e.g., palatoquadrate, otic region, trabecular horns) are identified by thin-plate spline deformation grids and are concordant with linear morphometric results. Thus, the anuran chondrocranium is not a static structure during premetamorphic stages and allometric patterns generally follow scaling predictions for tetrapod cranial development. Potential implications regarding larval functional morphology, cranial development, and chondrocranial evolution in anurans are discussed. J. Morphol. 252:131,144, 2002. © 2002 Wiley-Liss, Inc. [source] CURRENT VARIABILITY SHAPES MORPHOLOGICAL COMPLEXITY IN COLONIAL STREAM DIATOMSJOURNAL OF PHYCOLOGY, Issue 2001Article first published online: 24 SEP 200 Passy, S. I.1,2 & Freehafer, D.2 1Department of Biology, Rensselaer Polytechnic Institute, Troy, NY 12180; 2US Geological Survey, 425 Jordan Rd., Troy, NY 12180-8349 USA On August 27, 1999 diatoms were sampled, and current velocity was measured at 81 locations on a regular square sampling grid in an unshaded, cobble-bottom reach of White Creek, NY. The grid had an extent of 16 m2, interval, the distance between neighboring sampling points, of 0.5 m, and grain size, the size of the elementary sampling unit, of 0.01 m2. Six of the seven dominant benthic diatoms were colonial forms, including Diatoma vulgaris, Fragilaria capucina, F. crotonensis, Gomphoneis minuta, Melosira varians, and Synedra ulna. Their morphology and distribution were investigated from the perspective of fractal geometry and stream ecology, respectively. Fractal dimension of diatom colonies, indicative of their shape complexity, ranged from 1.06 to 1.54, demonstrating vast morphological variation from simple geometric shapes to complex outlines. The relative abundance of the six diatoms was regressed against current regime, which ranged from 0.03 to 0.66 m, s -1. All regression models were significant at P < 0.05 and explained between 55% and 94% of the variation in diatom distribution. The diatom niche breadth, i.e. the amount of environmental variability a species can tolerate, was defined from these models and showed substantial variation, from 5 to 14. The regression model of fractal dimension against niche breadth was significant and explained 76% of colonial shape variation, revealing a strong relationship between diatom colonial complexity and habitat variability. This finding suggests that environmental variability could create highly complex colonial morphologies in benthic diatoms as an evo-lutionary strategy for survival in unpredictable environments. [source] Principal component analysis of landmarks from reversible imagesJOURNAL OF THE ROYAL STATISTICAL SOCIETY: SERIES C (APPLIED STATISTICS), Issue 1 2004C. M. Theobald Summary., We consider the use of principal component analysis to summarize the variation in labelled landmark data for images which are reversible in the sense that a mirror image may be defined for each image and the original and mirror images may be regarded as equally representative of the population. We examine the effect of including the original and mirror images on a principal component analysis based on the landmark co-ordinates. The inclusion of mirror images is found to lead to a simplified interpretation in which some components measure asymmetry in the images and the remainder depend symmetrically on pairs of co-ordinates. This is illustrated on shape variation in carrots. A second application is to the segmentation of X-ray computed tomography images of sheep to locate the inner boundary of the carcass. It is found that image boundaries can be identified more accurately by modelling them with principal components, and that including mirror images can offer a further improvement in accuracy. Similar arguments apply when a population of images is thought to be invariant under a rotation and may also be relevant when a principal component analysis is applied to descriptive statistics such as Fourier sums. [source] A morphometric approach to the geographic variation of the terrestrial isopod species Armadillo tuberculatus (Isopoda: Oniscidea)JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 3 2009M. Kamilari Abstract The terrestrial isopod species Armadillo tuberculatus Vogl, 1876 (Crustacea, Isopoda, Oniscidea) is a widely polymorphic species distributed in the south-central Aegean region (Greece) with a different morph on each island. Variation consists in coloration, size of cuticular tubercules, shape of telson and the shape of the male first pleopod exopodite (secondary sexual character of taxonomic importance). We studied the allometric growth of a cuticular tubercule in 17 populations (for both male and female individuals) and the shape variation of the first male pleopod exopodite in 10 populations using Elliptic Fourier Analysis, in order to test for patterns of intraspecific variation and possible relationships between morphs. In addition, Thin Plate Spline analysis was used for the calculation of the minimum bending energy between different exopodite shapes, which was then used for estimating the minimum spanning network (MSN) connecting them. The different allometric growth rates of the tubercule among island groups were significantly related to island latitude and climatic factors. On the other hand, the clustering of islands and the MSN based on male exopodite shape differences were not related to the palaeogeography of the Aegean region or to the present geographic distances of islands. These results are interpreted as evidence for non-adaptive radiation of the morphs. Resumen El isópodo terrestre Armadillo tuberculatus Vogl, 1876 (Crustacea, Isopoda, Oniscidea) es una especie extensamente polimórfica distribuida por la región sur-central del piélago Egéo (Grecia), con una forma distinta en cada isla. Se trata de variaciones en la coloración, el tamaño de los tubérculos cuticulares y en la forma del primer exopodio masculino del pleopodo (carácter sexual secundario de importancia taxonómica). Estudiamos el crecimiento alométrico del tubérculo cuticular en 17 poblaciones (en individuos de ambos sexos) y la variación de la forma del primer exopodio masculino del pleopodo en 10 poblaciones según el análisis de Fourier elíptico (Elliptic Fourier Analysis) para detectar patrones de variación intraespecifica y relaciones posibles entre las formas de la especie. Además, el análisis Thin Plate Spline fue utilizado para el cálculo de la Energía de Flexión Mínima (Minimum Bending Energy) entre diversas formas del exopodio, que entonces fue utilizada para estimar la Mínima Red de Distancias (Minimum Spanning Network, MSN) que las conectaba. Detectamos una correlación significativa entre las diversas tasas de crecimiento alométrico del tubérculo entre los grupos de islas y la latitud de la isla. Por otro lado, la agrupación de las islas y la MSN, basada en las diferencias de la forma del exopodio, no fueron relacionados con la paleogeografía de la región del piélago Egéo ni con las actuales distancias geográficas de las islas. Estos resultados se interpretan como evidencia para la radiación non-adaptativa de las diversas formas de la especie. [source] A geometric morphometric analysis of the shape of the first upper molar in mice of the genus Mus (Muridae, Rodentia)JOURNAL OF ZOOLOGY, Issue 4 2006M. Macholán Abstract Phenotypic variation in the shape of the first upper molar among 595 mice, representing nine extant and three extinct taxa of the genus Mus, was studied with thin-plate spline analysis. The reliability of classification of individual specimens into known groups based on their molars varied from 75 to 100%, depending on group and method used. Including 13 sliding semilandmarks to the analysis improved the detection of different kinds of size and shape variation as well as visualization of shape differences between studied groups. Correlation between phylogenetic and morphometric distances suggested about 80% contribution of phylogenetic inertia to the molar shape variation; moreover, the importance of localized versus global shape changes was similar in the detection of phylogenetic signals. Finally, shape changes along individual evolutionary lineages were revealed, suggesting a few cases of reversals, convergence and/or retention of ancestral shape. The evolution of mouse molars has thus been driven by random effects of drift together with stabilizing selection and convergence. [source] XMM,Newton observations of UW CrB: detection of X-ray bursts and evidence for accretion disc evolutionMONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY, Issue 3 2005Pasi Hakala ABSTRACT UW CrB (MS 1603+2600) is a peculiar short-period X-ray binary that exhibits extraordinary optical behaviour. The shape of the optical light curve of the system changes drastically from night to night, without any changes in overall brightness. Here we report X-ray observations of UW CrB obtained with XMM,Newton. We find evidence for several X-ray bursts, confirming a neutron star primary. This considerably strengthens the case that UW CrB is an accretion disc corona system located at a distance of at least 5,7 kpc (3,5 kpc above the Galactic plane). The X-ray and Optical Monitor (ultraviolet,optical) light curves show remarkable shape variation from one observing run to another, which we suggest are due to large-scale variations in the accretion disc shape resulting from a warp that periodically obscures the optical and soft X-ray emission. This is also supported by the changes in phase-resolved X-ray spectra. [source] A method for quantifying rotational symmetryNEW PHYTOLOGIST, Issue 4 2007Frank M. Frey Summary ,,Here, a new approach for quantifying rotational symmetry based on vector analysis was described and compared with information obtained from a geometric morphometric analysis and a technique based on distance alone. ,,A new method was developed that generates a polygon from the length and angle data of a structure and then quantifies the minimum change necessary to convert that polygon into a regular polygon. This technique yielded an asymmetry score (s) that can range from 0 (perfect symmetry) to 1 (complete asymmetry). Using digital images of Geranium robertianum flowers, this new method was compared with a technique based on lengths alone and with established geometric morphometric methods used to quantify shape variation. ,,Asymmetry scores (s) more clearly described variation in symmetry and were more consistent with a visual assessment of the images than either comparative technique. ,,This procedure is the first to quantify the asymmetry of radial structures accurately, uses easily obtainable measures to calculate the asymmetry score and allows comparisons among individuals and species, even when the comparisons involve structures with different patterns of symmetry. This technique enables the rigorous analysis of polysymmetric structures and provides a foundation for a better understanding of symmetry in nature. [source] Pattern of geographical variation in petal shape in wild populations of Primula sieboldii E. MorrenPLANT SPECIES BIOLOGY, Issue 2 2007YOSUKE YOSHIOKA Abstract The petal shape of Primula sieboldii E. Morren (Primulaceae) is diverse in wild populations. In this study, we investigated population differentiation in the petal shape of P. sieboldii using image analysis. Flowers were sampled from 160 genets from eight wild populations in the western to north-eastern parts of the Japanese archipelago. Principal component (PC) analysis of 40 coefficients of elliptic Fourier descriptors (EFDs) detected three major characteristics of petal shape variation: the ratio of length to width (PC1), the depth of the head notch (PC2) and the position of the center of gravity (PC3). To test the association between divergence in petal shape and geographical and genetic distances, we calculated two types of pairwise population distances for petal shape: Mahalanobis distances for the 40 EFD coefficients and for the first three PCs. The existence of an association between neutral genetic markers and petal shape was revealed by the Mahalanobis distances based on the 40 EFD coefficients, suggesting that evolutionary forces, such as founder effect and isolation by distance effect, are probably the main causes of differentiation in petal shape. In contrast, we found no association between Mahalanobis distances for the first three PCs and geographical and genetic distances. The discrepancy between the two petal shape distances indicated that the population differentiation promoted by the founder effects and isolation by distance effect appears mainly as subtle changes in petal shape rather than in major characteristics of petal shape variation. [source] Spatial patterns and evolutionary processes in southern South America: A study of dental morphometric variationAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 1 2010Valeria Bernal Abstract The purpose of this article is to examine the patterns of evolutionary relationships between human populations from the later Late Holocene (1,500,100 years BP) of southern South America on the basis of dental morphometric data. We tested the hypotheses that the variation observed in this region would be explained by the existence of populations with different phylogenetic origin or differential action of gene flow and genetic drift. In this study, we analyzed permanent teeth from 17 samples of male and female adult individuals from throughout southern South America. We measured mesiodistal and buccolingual diameters at the base of the crown, along the cement,enamel junction. The results of multiple regression analysis and a mantel correlogram indicate the existence of spatial structure in dental shape variation, as the D2 Mahalanobis distance between samples increases with increasing geographical distance between them. In addition, the correlation test results show a trend toward reduction of the internal variation of samples with increasing latitude. The detected pattern of dental variation agrees with the one expected as an outcome of founder serial effects related to an expansion of range during the initial occupation of southern South America. Am J Phys Anthropol, 2010. © 2009 Wiley-Liss, Inc. [source] Intensity, repetitiveness, and directionality of habitual adolescent mobility patterns influence the tibial diaphysis morphology of athletesAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 1 2009Colin N. Shaw Abstract Mobility patterns affect the loads placed on the lower limbs during locomotion and may influence variation in lower limb diaphyseal robusticity and shape. This relationship commonly forms the basis for inferring mobility patterns from hominin fossil and skeletal remains. This study assesses the correspondence between athletic histories, varying by loading intensity, repetition and directionality, measured using a recall questionnaire, and peripheral quantitative computed tomography-derived measurements of tibial diaphysis rigidity and shape. Participants included male university varsity cross-country runners (n = 15), field hockey players (n = 15), and controls (n = 20) [mean age: 22.1 (SD +/, 2.6) years]. Measurements of tibial rigidity (including J, %CA, Imax, Imin, and average cortical thickness) of both runners and field hockey players were greater than controls (P , 0.05). Differences in tibial shape (Imax/Imin, P , 0.05) between runners and hockey players reflect pronounced maximum plane (Imax) rigidity in runners, and more symmetrical hypertrophy (Imax, Imin) among hockey players. This corresponds with the generally unidirectional locomotor patterns of runners, and the multidirectional patterns of hockey players. These results support the relationship between mobility and tibial diaphysis morphology as it is generally interpreted in the anthropological literature, with greater levels of mobility associated with increased diaphyseal robusticity and shape variation. Although exercise intensity may be the primary influence on these properties, the repetitiveness of the activity also deserves consideration. In conclusion, bone morphological patterns can reflect habitual behaviors, with adaptation to locomotor activities likely contributing to variation in tibial rigidity and shape properties in archaeological and fossil samples. Am J Phys Anthropol 2009. © 2009 Wiley-Liss, Inc. [source] The shape of the early hominin proximal femurAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 2 2009Elizabeth H. Harmon Abstract Postcranial skeletal variation among Plio-Pleistocene hominins has implications for taxonomy and locomotor adaptation. Although sample size constraints make interspecific comparisons difficult, postcranial differences between Australopithecus afarensis and Australopithecus africanus have been reported (McHenry and Berger: J Hum Evol 35 1998 1,22; Richmond et al.: J Hum Evol 43 [2002] 529,548; Green et al.: J Hum Evol 52 2007 187,200). Additional evidence indicates that the early members of the genus Homo show morphology like recent humans (e.g., Walker and Leakey: The Nariokotome Homo erectus skeleton. Cambridge: Harvard, 1993). Using a larger fossil sample than previous studies and novel methods, the early hominin proximal femur is newly examined to determine whether new data alter the current view of femoral evolution and inform the issue of interspecific morphological variation among australopiths. Two- and three-dimensional data are collected from large samples of recent humans, Pan, Gorilla, and Pongo and original fossil femora of Australopithecus, Paranthropus, and femora of African fossil Homo. The size-adjusted shape data are analyzed using principal components, thin plate spline analysis, and canonical variate analysis to assess shape variation. The results indicate that femora of fossil Homo are most similar to modern humans but share a low neck-shaft angle (NSA) with australopiths. Australopiths as a group have ape-like greater trochanter morphology. A. afarensis differs from P. robustus and A. africanus in attributes of the neck and NSA. However, interspecific femoral variation is low and australopiths are generally morphologically similar. Although the differences are not dramatic, when considered in combination with other postcranial evidence, the adaptive differences among australopiths in craniodental morphology may have parallels in the postcranium. Am J Phys Anthropol, 2009. © 2008 Wiley-Liss, Inc. [source] A comparison of the ontogeny of shape variation in the anthropoid scapula: Functional and phylogenetic signalAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 3 2008Nathan M. Young Abstract This article compares ontogenetic shape variation in the scapula of 17 anthropoid species using three-dimensional landmark-based geometric morphometrics. These data are used to investigate functional and phylogenetic signal in the major components of scapular variation and to evaluate the degree to which postnatal growth contributes to interspecific differences in shape. Results indicate that the shape of the infant and adult scapula is primarily associated with positional behavior (e.g., orthograde suspensory nonquadrupeds versus pronograde quadrupeds), but within this functional structure there is phylogenetic signal, particularly at infant stages. Growth most closely correlates with infant/adult shape and locomotor function. These results suggest that the shape of the infant scapula drives the pattern of postnatal scapular growth and adult morphology. As such, variation in postnatal growth is not the primary source of interspecific variation in adult shape. Instead, interspecific differences in scapular morphology are hypothesized to be the result of selection for variation in embryonic developmental processes that affect shape. Am J Phys Anthropol, 2008. © 2008 Wiley-Liss, Inc. [source] Comparative morphometrics of embryonic facial morphogenesis: Implications for cleft-lip etiologyTHE ANATOMICAL RECORD : ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY, Issue 1 2007Nathan M. Young Abstract Cleft lip (CL) with or without cleft palate (CL[P]) has a complex etiology but is thought to be due to either genetic or environmentally induced disruptions of developmental processes affecting the shape and size of the facial prominences (medial nasal, lateral nasal, and maxilla). Recent advances in landmark-based morphometrics enable a rigorous reanalysis of phenotypic shape variation associated with facial clefting. Here we use geometric morphometric (GM) tools to characterize embryonic shape variation in the midface and head of six strains of mice that are both cleft-liable (A, A/WySn, CL/Fr) and normal (BALB/cBy, C57BL, CD1). Data were comprised of two-dimensional landmarks taken from frontal and lateral photographs of embryos spanning the time period in which the facial prominences fuse (GD10-12). Results indicate that A/- strain mice, and particularly A/WySn, have overall smaller midfaces compared to other strains. The A/WySn strain also has significant differences in facial shape related to retarded development. Overall, CL/Fr strain mice are normal-sized, but tend to have undersized maxillary prominences that do not project anteriorly and have a small nasal contact area. These results suggest that the etiology of clefting differs in A/WySn and CL/Fr strains, with the former strain suffering disruptions to developmental processes affecting overall size (e.g., neural crest migration deficiencies and lower mitotic activity), while the latter strain has defects restricted to the shape and size of the maxilla. A combination of molecular experimentation and phenotypic analysis of shape is required to test these hypotheses further. Anat Rec, 290:123,139, 2007. © 2006 Wiley-Liss, Inc. [source] Cranial allometry, phylogeography, and systematics of large-bodied papionins (primates: Cercopithecinae) inferred from geometric morphometric analysis of landmark dataTHE ANATOMICAL RECORD : ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY, Issue 2 2003Stephen R. Frost Abstract The cranial morphology of the African Old World monkeys Mandrillus, Papio, and Theropithecus (i.e., baboons) has been the subject of a number of studies investigating their systematic relationships, patterns of scaling, and growth. In this study, we use landmark-based geometric morphometrics and multivariate analysis to assess the effects of size, sex, taxonomy, and geographic location on cranial shape. Forty-five landmarks were digitized in three dimensions on 452 baboon crania and subjected to generalized Procrustes analysis (GPA), which standardizes geometric size but leaves scaling-based shape differences in the data. The resulting shape coordinates were submitted to regression analysis, principal components analysis (PCA), partial least-squares (PLS) analysis, and various clustering techniques. Scaling (shape differences correlated with size) was the largest single factor explaining cranial shape variation. For instance, most (but not all) of the shape differences between the sexes were explained by size dimorphism. However, central tendencies of shape clearly varied by taxon (both specific and subspecific) even after variations in size and sex were adjusted out. Within Papio, about 60% of the size- and sex-adjusted shape variations were explained by the geographic coordinates of the specimen's provenance, revealing a stepped cline in cranial morphology, with the greatest separation between northern and southern populations. Based on evidence from genetic studies, and the presence of at least two major hybrid/interbreeding zones, we interpret the phylogeographic pattern of cranial variation as indicating that these populations are best ranked as subspecies of a single species, rather than as two or more distinct biological species. This objective approach can be applied to other vertebrate species or species groups to help determine the taxonomic rank of problematic taxa. Anat Rec Part A 275A:1048,1072, 2003. © 2003 Wiley-Liss, Inc. [source] | ||||||||||||||||||||||||||||||||||