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Shape Fluctuations (shape + fluctuation)
Selected AbstractsSynchronization patterns in spaghetti-like nanoclustersINTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Issue 15 2008Acep Purqon Abstract Spaghetti-like nanoclusters concern disordered shapes and irregular shape fluctuations in few correlated biological lipids. We evaluate the shape fluctuations by introducing Symmetry- S as a physical parameter for measuring symmetry degrees and detecting shape transitions. From numerical simulation of few correlated lipids of POPC and POPE at 300 K and 340 K by using molecular dynamics, we investigate the symmetry dynamics for each individual cluster by analyzing both spatiotemporal and frequency. From spatiotemporal analysis, we find several jump motions in S -dynamics and non-Gaussian distributions in S -distribution. Interestingly, the jump motions likely contribute on the existence of transitions in the non-Gaussian distributions. Additionally, even number of lipids show more symmetric than the odd number of lipids and the symmetry distributions shift at higher temperature, while, from three dimension of actual position of symmetry dynamics, they are not easy to configure high symmetry as well as showing certain patterns. From power spectra density analysis, each individual cluster shows nearly random fluctuation. Besides individual clusters, we also investigate mutual clusters. Surprisingly, although individual clusters show fluctuations randomly, mutual clusters show certain direction correlations. Moreover, they show certain patterns in delayed time analysis such as mutual fluctuations periodically occur for same number of lipids. It indicates that an existence of synchronization patterns occur in shape fluctuations of spaghetti-like nanoclusters. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008 [source] Reciprocal-space mapping of epitaxic thin films with crystallite size and shape polydispersityACTA CRYSTALLOGRAPHICA SECTION A, Issue 1 2006A. Boulle A development is presented that allows the simulation of reciprocal-space maps (RSMs) of epitaxic thin films exhibiting fluctuations in the size and shape of the crystalline domains over which diffraction is coherent (crystallites). Three different crystallite shapes are studied, namely parallelepipeds, trigonal prisms and hexagonal prisms. For each shape, two cases are considered. Firstly, the overall size is allowed to vary but with a fixed thickness/width ratio. Secondly, the thickness and width are allowed to vary independently. The calculations are performed assuming three different size probability density functions: the normal distribution, the lognormal distribution and a general histogram distribution. In all cases considered, the computation of the RSM only requires a two-dimensional Fourier integral and the integrand has a simple analytical expression, i.e. there is no significant increase in computing times by taking size and shape fluctuations into account. The approach presented is compatible with most lattice disorder models (dislocations, inclusions, mosaicity, ,) and allows a straightforward account of the instrumental resolution. The applicability of the model is illustrated with the case of an yttria-stabilized zirconia film grown on sapphire. [source] DNA Condensation by Field-Induced Non-Equilibrium NoiseCHEMPHYSCHEM, Issue 16 2009Robijn F. Bruinsma Prof. Abstract DNA molecules under good solvent conditions condense when subjected to strong AC electrical fields. It is shown that AC electrical fields couple charge fluctuations to molecular shape fluctuations, which produces a non-equilibrium noise source that can dominate over equilibrium thermal noise in the long-wavelength limit. The field-induced excess charge fluctuations amplify the Asakura,Oosawa fluctuation attraction force between neighboring chains, providing a mechanism for field-induced DNA condensation. [source] | ||||||||||