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Shallow
Kinds of Shallow Terms modified by Shallow Selected AbstractsSHALLOW, DEEPER, DEEP: A FEW THOUGHTS ON A SMALL PIECE OF WALTER SINNOTT-ARMSTRONG'S MORAL SKEPTICISMSANALYTIC PHILOSOPHY, Issue 3 2008Jamie Dreier First page of article [source] Seasonal response of nutrients to reduced phosphorus loading in 12 Danish lakesFRESHWATER BIOLOGY, Issue 10 2005MARTIN SØNDERGAARD Summary 1.,Concentrations of phosphorus, nitrogen and silica and alkalinity were monitored in eight shallow and four deep Danish lakes for 13 years following a phosphorus loading reduction. The aim was to elucidate the seasonal changes in nutrient concentrations during recovery. Samples were taken biweekly during summer and monthly during winter. 2.,Overall, the most substantive changes in lake water concentrations were seen in the early phase of recovery. However, phosphorus continued to decline during summer as long as 10 years after the loading reduction, indicating a significant, albeit slow, decline in internal loading. 3.,Shallow and deep lakes responded differently to reduced loading. In shallow lakes the internal phosphorus release declined significantly in spring, early summer and autumn, and only non-significantly so in July and August. In contrast, in deep lakes the largest reduction occurred from May to August. This difference may reflect the much stronger benthic pelagic-coupling and the lack of stratification in shallow lakes. 4.,Nitrogen only showed minor changes during the recovery period, while alkalinity increased in late summer, probably conditioned by the reduced primary production, as also indicated by the lower pH. Silica tended to decline in winter and spring during the study period, probably reflecting a reduced release of silica from the sediment because of enhanced uptake by benthic diatoms following the improved water transparency. 5.,These results clearly indicate that internal loading of phosphorus can delay lake recovery for many years after phosphorus loading reduction, and that lake morphometry (i.e. deep versus shallow basins) influences the patterns of change in nutrient concentrations on both a seasonal and interannual basis. [source] An Analytical Method of Analyzing Oscillatory Slug Test Pressure Heads from Shallow or Deep Pressure TransducersGROUND WATER, Issue 1 2007Article first published online: 28 JUL 200 No abstract is available for this article. [source] Modified passive capillary samplers for collecting samples of snowmelt infiltration for stable isotope analysis in remote, seasonally inaccessible watersheds 2: field evaluationHYDROLOGICAL PROCESSES, Issue 7 2010Marty D. Frisbee Abstract Twelve modified passive capillary samplers (M-PCAPS) were installed in remote locations within a large, alpine watershed located in the southern Rocky Mountains of Colorado to collect samples of infiltration during the snowmelt and summer rainfall seasons. These samples were collected in order to provide better constraints on the isotopic composition of soil-water endmembers in the watershed. The seasonally integrated stable isotope composition (,18O and ,2H) of soil-meltwater collected with M-PCAPS installed at shallow soil depths < 10 cm was similar to the seasonally integrated isotopic composition of bulk snow taken at the soil surface. However, meltwater which infiltrated to depths > 20 cm evolved along an isotopic enrichment line similar to the trendline described by the evolution of fresh snow to surface runoff from snowmelt in the watershed. Coincident changes in geochemistry were also observed at depth suggesting that the isotopic and geochemical composition of deep infiltration may be very different from that obtained by surface and/or shallow-subsurface measurements. The M-PCAPS design was also used to estimate downward fluxes of meltwater during the snowmelt season. Shallow and deep infiltration averaged 8·4 and 4·7 cm of event water or 54 and 33% of the measured snow water equivalent (SWE), respectively. Finally, dominant shallow-subsurface runoff processes occurring during snowmelt could be identified using geochemical data obtained with the M-PCAPS design. One soil regime was dominated by a combination of slow matrix flow in the shallow soil profile and fast preferential flow at depth through a layer of platy, volcanic rocks. The other soil regime lacked the rock layer and was dominated by slow matrix flow. Based on these results, the M-PCAPS design appears to be a useful, robust methodology to quantify soil-water fluxes during the snowmelt season and to sample the stable isotopic and geochemical composition of soil-meltwater endmembers in remote watersheds. Copyright © 2009 John Wiley & Sons, Ltd. [source] Seasonal changes of antioxidant and oxidative parameters in the coral Pocillopora capitata on the Pacific coast of MexicoMARINE ECOLOGY, Issue 3 2010Marco A. Liñán-Cabello Abstract The physiological responses of the coral Pocillopora capitata to environmental conditions common in winter and summer were studied in 2007 during February,March (winter) and June,July (summer) at La Boquita reef (Manzanillo, Colima, Mexico). Shallow and deep sampling stations were established at different distances from a small jetty built next to the Juluapan Lagoon. We analyzed superoxide radicals () and lipid peroxidants (TBARS); the activities of superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx), glutathione reductase (GR), and glutathione-S-transferase (GST); chlorophyll a (Chl a), zooxanthellae density (ZD); and mycosporine-like amino acids (MAAs). Our results showed that the , TBARS, CAT, GST, MAAs, and Chl a, levels were significantly higher in summer (P < 0.05); no seasonal difference was found for GPx, GR or ZD. We found significant differences (P < 0.05) in winter only for Chl a and ZD at shallow sites and, in contrast, for at deeper sites. The results of this study indicate that increasing temperature and radiation associated with seasonal changes (from winter to summer), the efficiency of the enzymes GST, CR and GPX, and the production of MAAs together form a powerful mechanism for P. capitata to offset the detrimental effects of environmental change. [source] Shallow and deep excited states of mesoscopic structure in AgI,,Al2O3 compositesPHYSICA STATUS SOLIDI (C) - CURRENT TOPICS IN SOLID STATE PHYSICS, Issue 2 2003Shosuke Mochizuki Abstract The photoluminescence (PL) and PL excitation (PLE) spectra of superionic conducting AgI,,Al2O3 composites have been measured at different temperatures between 7 K and room temperature. The X-ray diffraction patterns of these composites have also been measured at room temperature. The PL intensity peak observed at 426 nm is closely connected with radiative decay of free excitons in AgI, while other emission bands are connected with shallow excited states in AgI and deep excited states at the AgI/,Al2O3 interface. With increasing excitation light intensity, the PL efficiencies of several emission bands become saturated, except for the free exciton band. These results may give important information about the origins of the high ionic motion in these composites. [source] Shallow- and deep-luminescence centers in AgI-based superionic conductor glassPHYSICA STATUS SOLIDI (C) - CURRENT TOPICS IN SOLID STATE PHYSICS, Issue 2 2003Shosuke Mochizuki Abstract The photoluminescence (PL), time-resolved photoluminescence (TRPL) and PL-excitation (PLE) spectra of superionic conductor glass (AgI)0.85(Ag2WO4)0.15 have been measured at different temperatures between 8 K and room temperature. The PL intensity peak is observed at 426 nm which corresponds to free exciton wavelength of pristine AgI. There are also different PL bands well related to the internal and interface states of mesoscopic AgI particles in Ag2WO4 glass matrix. This may give important information about the origins of superionic conduction. With increasing excitation light intensity, the PL efficiencies of several emission bands become saturated, except for the free exciton band. [source] Deep Identity, Shallow Time: Sustaining a Future in Victorian Fishing CommunitiesTHE AUSTRALIAN JOURNAL OF ANTHROPOLOGY, Issue 1 2003Monica Minnegal Like commercial fishers everywhere, it seems, those living in coastal communities of Victoria perceive themselves to be under threat from recreational fishers, environmentalists, imposed management regimes, and modernisation and globalisation of the industry. In responding to these threats they appeal to conventional props of tradition,to continuity in genealogical time, affiliation with place and specialised knowledge and practice. This seems paradoxical, given that most established fishers in Victoria are first or second generation members of an industry that, through its 150-year history, has been characterised by innovation and mobility. That paradox, we argue, is more apparent than real. Fisher identity is grounded primarily in engagement with an environment that is not familiar to outsiders. The paradox arises because fishers, like others who seek to sustain a future in the face of threat from outsiders, reshape strongly felt identity as tradition. [source] From Shallow to Deep: Toward a Thorough Cultural Analysis of School Achievement PatternsANTHROPOLOGY & EDUCATION QUARTERLY, Issue 4 2008Mica Pollock What do anthropologists of education do? Many observers think that we provide quick glosses on what various "cultures",typically racialized, ethnic, and national-origin groups,"do" in schools. Hervé Varenne and I each name an alternative form of analysis that we think should be central to the subfield. Varenne argues that anthropologists of education should expand analysis of teaching and learning beyond (American) schools and classrooms and examine everyday life in various places as containing countless moments of teaching and learning that are worth understanding. Varenne reminds us that teaching and learning occur nonstop in everyday life, not just in classrooms. "Education" is about far more than what we typically call "achievement," which usually translates into grades, graduation, or test scores.1 This long-standing way of thinking anthropologically about "education" is essential to exploding simplistic notions of what, when, how, and from whom people "learn." In my essay, I contend that U.S. anthropologists of education also need to analyze thoroughly how U.S. school achievement patterns take shape in real time. I argue that it is our particular responsibility to counteract "shallow" analyses of "culture" in schools, which purport to explain "achievement gaps" by making quick claims about how parents and children from various racial, ethnic, national-origin, or class groups react to schools. Such shallow analyses dangerously oversimplify the social processes, interactions, and practices that create disparate outcomes for children. Shallow cultural analyses are common in both journalism and popular discourse,and in schools of education as well (see Ladson-Billings 2006 for a related critique). They are explanatory claims that name a group as having a "cultural" set of behaviors and then name that "cultural" behavior as the cause of the group's school achievement outcomes. (E.g., some argue that "group x"[e.g., "Asians"] employs a "group x behavior"[e.g., "push their children"] that causes "high" or "low" achievement.) Such claims allow people to explain achievement outcomes too simply as the production of parents and children without ever actually examining the real-life experiences of specific parents and children in specific opportunity contexts. Going deeper requires pressing for actual, accurate information about the everyday interactions among real-life parents, children, and other actors that add up to school achievement patterns (graduation rates, dropout rates, skill-test scores, suspension lists, and the like). When anthropologists of education say that we study culture, we mean that we are studying the organization of people's everyday interactions in concrete contexts. Shallow analyses of "culture" that purport to describe only how a "group's" parents train its children blame a reduced set of actors, behaviors, and processes for educational outcomes, and they include a reduced set of actors and actions in a reduced set of projects for educational improvement. Anthropologists of education should make clear that we examine children's experiences both in context and in appropriate detail; we study interactional processes that other observers might describe too quickly or with insufficient information.2 I think that if anthropologists of education explicitly, publicly, and colloquially name what counts as deep, thorough cultural analysis of American school achievement patterns, we will make ourselves far better prepared to respond to harmfully shallow claims made by journalists, colleagues, and educators alike. We will also support other stakeholders in children's lives (including teachers and teacher educators) to think more thoroughly about which actions, by whom, and in what situations produce children's achievement. This short essay suggests four key ways that anthropologists of education can, do, and should get "deep" in analyzing American achievement patterns. I invite colleagues to edit and extend this list in future editions of AEQ. [source] Manifold Homotopy via the Flow ComplexCOMPUTER GRAPHICS FORUM, Issue 5 2009Bardia Sadri Abstract It is known that the critical points of the distance function induced by a dense sample P of a submanifold , of ,n are distributed into two groups, one lying close to , itself, called the shallow, and the other close to medial axis of ,, called deep critical points. We prove that under (uniform) sampling assumption, the union of stable manifolds of the shallow critical points have the same homotopy type as , itself and the union of the stable manifolds of the deep critical points have the homotopy type of the complement of ,. The separation of critical points under uniform sampling entails a separation in terms of distance of critical points to the sample. This means that if a given sample is dense enough with respect to two or more submanifolds of ,n, the homotopy types of all such submanifolds together with those of their complements are captured as unions of stable manifolds of shallow versus those of deep critical points, in a filtration of the flow complex based on the distance of critical points to the sample. This results in an algorithm for homotopic manifold reconstruction when the target dimension is unknown. [source] Resurfacing of Different Types of Facial Acne Scar With Short-Pulsed, Variable-Pulsed, and Dual-Mode Er:YAG LaserDERMATOLOGIC SURGERY, Issue 4 2004Sang-Hyuk Woo MD Background. Laser skin resurfacing has become a popular therapeutic modality for the correction of acne scars, but it is not always effective in all types of acne scars. Objective. To evaluate the clinical effects of resurfacing with the short-pulsed Er:YAG laser, the variable-pulsed Er:YAG laser, and the dual-mode Er:YAG laser for each type of facial acne scars. Methods. One hundred fifty-eight patients with facial acne scars were included in this study. Eighty three patients (18 deep boxcar scars, 8 ice-pick scars, 11 rolling scars, and 46 shallow boxcars) were treated with the 350-,s short-pulsed Er:YAG laser at the setting of 12.5 to 15%/cm2. Thirty-five patients (8 deep boxcar scars, 4 ice-pick scars, 12 rolling scars, and 11 shallow boxcars) were treated with the variable-pulsed Er:YAG laser at the setting of 7.0 to 7.5%/cm2 and 7-ms pulse duration. Forty patients (8 deep boxcar scars, 4 ice-pick scars, 17 rolling scars, and 11 shallow boxcars) were treated with the dual-mode Er:YAG laser with 350-, ablation mode at 17.5%/cm2 and 8-ms coagulation mode at 3.15%/cm2. Facial photographs were obtained at baseline and at 2- to 4-week intervals postoperatively. Acne scars were classified into four types, and clinical improvements of facial acne scars were evaluated. Results. Resurfacing with the short-pulsed Er:YAG laser shows good to excellent results for ice-pick and shallow boxcar scars, fair to good for deep boxcar scars, and poor to fair for rolling scars. Resurfacing with the variable-pulsed laser shows good to excellent results for ice-pick and shallow boxcar scars, fair to good for deep boxcar scars, and good for rolling scars. Resurfacing with the dual-mode laser shows good to excellent results for ice-pick, shallow, and rolling scars and produced good results on deep boxcar scars. Conclusion. Shallow boxcar and ice-pick scars can be treated successfully using any types of Er:YAG laser. In cases of rolling and deep boxcar scars, however, Er:YAG laser with a long-pulse duration for a thermal effect is needed for successful treatment. [source] Change in action: how infants learn to walk down slopesDEVELOPMENTAL SCIENCE, Issue 6 2009Simone V. Gill A critical aspect of perception,action coupling is the ability to modify ongoing actions in accordance with variations in the environment. Infants' ability to modify their gait patterns to walk down shallow and steep slopes was examined at three nested time scales. Across sessions, a microgenetic training design showed rapid improvements after the first session in infants receiving concentrated practice walking down slopes and in infants in a control group who were tested only at the beginning and end of the study. Within sessions, analyses across easy and challenging slope angles showed that infants used a ,braking strategy' to curb increases in walking speed across increasingly steeper slopes. Within trials, comparisons of infants' gait modifications before and after stepping over the brink of the slopes showed that the braking strategy was planned prospectively. Findings illustrate how observing change in action provides important insights into the process of skill acquisition. [source] Stream geomorphology in a mountain lake district: hydraulic geometry, sediment sources and sinks, and downstream lake effectsEARTH SURFACE PROCESSES AND LANDFORMS, Issue 4 2007C. D. Arp Abstract Lakes are common in glaciated mountain regions and geomorphic principles suggest that lake modifications to water and sediment fluxes should affect downstream channels. Lakes in the Sawtooth Mountains, Idaho, USA, were created during glaciation and we sought to understand how and to what extent glacial morphology and lake disruption of fluxes control stream physical form and functions. First, we described downstream patterns in channel form including analyses of sediment entrainment and hydraulic geometry in one catchment with a lake. To expand on these observations and understand the role of glacial legacy, we collected data from 33 stream reaches throughout the region to compare channel form and functions among catchments with lakes, meadows (filled lakes), and no past or present lakes. Downstream hydraulic geometry relationships were weak for both the single catchment and regionally. Our data show that downstream patterns in sediment size, channel shape, sediment entrainment and channel hydraulic adjustment are explained by locations of sediment sources (hillslopes and tributaries) and sediment sinks (lakes). Stream reaches throughout the region are best differentiated by landscape position relative to lakes and meadows according to channel shape and sediment size, where outlets are wide and shallow with coarse sediment, and inlets are narrow and deep with finer sediment. Meadow outlets and lake outlets show similarities in the coarse-sediment fraction and channel capacity, but meadow outlets have a smaller fine-sediment fraction and nearly mobile sediment. Estimates of downstream recovery from lake effects on streams suggest 50 per cent recovery within 2,4 km downstream, but full recovery may not be reached within 20 km downstream. These results suggest that sediment sinks, such as lakes, in addition to sources, such as tributaries, are important local controls on mountain drainage networks. Copyright © 2006 John Wiley & Sons, Ltd. [source] Wind effects on sediment transport by raindrop-impacted shallow flow: a wind-tunnel studyEARTH SURFACE PROCESSES AND LANDFORMS, Issue 8 2004G. Erpul Abstract In wind-driven rains, wind velocity and direction are expected to affect not only energy input of rains but also shallow ,ow hydraulics by changing roughness induced by raindrop impacts with an angle on ,ow and the unidirectional splashes in the wind direction. A wind-tunnel study under wind-driven rains was conducted to determine the effects of horizontal wind velocity and direction on sediment transport by the raindrop-impacted shallow ,ow. Windless rains and the rains driven by horizontal wind velocities of 6 m s,1, 10 m s,1, and 14 m s,1 were applied to three agricultural soils packed into a 20 by 55 cm soil pan placed on both windward and leeward slopes of 7 per cent, 15 per cent, and 20 per cent. During each rainfall application, sediment and runoff samples were collected at 5-min intervals at the bottom edge of the soil pan with wide-mouth bottles and were determined gravimetrically. Based on the interrill erosion mechanics, kinetic energy ,ux (Ern) as a rainfall parameter and product of unit discharge and slope in the form of qbSco as a ,ow parameter were used to explain the interactions between impact and ,ow parameters and sediment transport (qs). The differential sediment transport rates occurred depending on the variation in raindrop trajectory and rain intensity with the wind velocity and direction. Flux of rain energy computed by combining the effects of wind on the velocity, frequency, and angle of raindrop impact reasonably explained the characteristics of wind-driven rains and acceptably accounted for the differences in sediment delivery rates to the shallow ,ow transport (R2 , 0·78). Further analysis of the Pearson correlation coef,cients between Ern and qSo and qs also showed that wind velocity and direction signi,cantly affected the hydraulics of the shallow ,ow. Ern had a smaller correlation coef,cient with the qs in windward slopes where not only reverse splashes but also reverse lateral raindrop stress with respect to the shallow ,ow direction occurred. However, Ern was as much effective as qSo in the sediment transport in the leeward slopes where advance splashes and advance lateral raindrop stress on the ,ow occurred. Copyright © 2004 John Wiley & Sons, Ltd. [source] Flow reversal over a natural pool,riffle sequence: a computational studyEARTH SURFACE PROCESSES AND LANDFORMS, Issue 7 2003Zhixian Cao Abstract A computational study is presented on the hydraulics of a natural pool,rif,e sequence composed of mixed cobbles, pebbles and sand in the River Lune, northern England. A depth-averaged two-dimensional numerical model is employed, calibrated with observed data at the ,eld site. From the computational outputs, the occurrence of longitudinally double peak zones of bed shear stress and velocity is found. In particular, at low discharge there exists a primary peak zone of bed shear stress and velocity at the rif,e tail in line with the local maximum energy slope, in addition to a secondary peak at the pool head. As discharge increases, the primary peak at the rif,e tail at low ,ow moves toward the upstream side of the rif,e along with the maximum energy slope, showing progressive equalization to the surrounding hydraulic pro,les. Concurrently, the secondary peak, due to channel constriction, appears to stand at the pool head, with its value increasing with discharge and approaching or exceeding the primary peak over the rif,e. The existence of ,ow reversal is demonstrated for this speci,c case, which is attributable to channel constriction at the pool head. A dynamic equilibrium model is presented to reconstruct the pool,rif,e morphology. A series of numerical modelling exercises demonstrates that the pool,rif,e morphology is more likely produced by shallow ,ows concentrated with coarse sediments than deep ,ows laden with low concentrations of ,ne sediments. It is concluded that channel constriction can, but may not necessarily, lead to competence reversal, depending on channel geometry, ,ow discharge and sediment properties. Copyright © 2003 John Wiley & Sons, Ltd. [source] Woody plants modulate the temporal dynamics of soil moisture in a semi-arid mesquite savanna,ECOHYDROLOGY, Issue 1 2010Daniel L. Potts Abstract Climate variability and human activities interact to increase the abundance of woody plants in arid and semi-arid ecosystems worldwide. How woody plants interact with rainfall to influence patterns of soil moisture through time, at different depths in the soil profile and between neighboring landscape patches is poorly known. In a semi-arid mesquite savanna, we deployed a paired array of sensors beneath a mesquite canopy and in an adjacent open area to measure volumetric soil water content (,) every 30 min at several depths between 2004 and 2007. In addition, to quantify temporally dynamic variation in soil moisture between the two microsites and across soil depths we analysed , time-series using fast Fourier transforms (FFT). FFT analyses were consistent with the prediction that by reducing evaporative losses through shade and reducing rainfall inputs through canopy interception of small rainfall events, the mesquite canopy was associated with a decline in high-frequency (hour-to-hour and day-to-day) variation in shallow ,. Finally, we found that, in both microsites, high-frequency , variation declined with increasing soil depth as the influence of evaporative losses and inputs associated with smaller rainfall events declined. In this case, we argue that the buffering of shallow soil moisture against high-frequency variations can enhance nutrient cycling and alter the carbon cycle in dryland ecosystems. Copyright © 2009 John Wiley & Sons, Ltd. [source] Moisture controls on carbon dioxide dynamics of peat- Sphagnum monolithsECOHYDROLOGY, Issue 1 2009M. Strack Abstract Sphagnum moss is the major peat-forming vegetation component in boreal peatlands. The relationship between Sphagnum productivity and moss moisture content has been documented; however, the link between moss moisture content and conditions in the underlying peat column is less clear. We conducted a pilot study in which we monitored volumetric moisture content with depth and gravimetric water content of Sphagnum capitula and CO2 exchange for two peat monoliths with intact moss layer dominated by Sphagnum fuscum and S. magellanicum. Measurements were made under drying conditions and rewetting from below and following simulated precipitation events. Capitulum moisture content was related to water table position but varied between species. Both capitulum moisture content and water table position could be used to explain net CO2 exchange and respiration during drying and rewetting from below, although hysteresis was apparent where respiration was lower on rewetting than drying for the same water table position. Precipitation complicated these relationships because small events (<5 mm) rewetted the upper few centimeters of moss resulting in a change in capitulum moisture content equivalent to a rise in water table position of ,20 cm. This change in capitulum moisture content resulted in substantial shifts in both photosynthesis and respiration rates without affecting water table position or subsurface volumetric water contents as shallow as 5 cm below the surface. While these small events will be difficult to measure in the field, this study suggests they are essential to effectively track or model Sphagnum productivity because they may contribute significantly to seasonal carbon balance. Copyright © 2009 John Wiley & Sons, Ltd. [source] Trading off the ability to exploit rich versus poor food qualityECOLOGY LETTERS, Issue 5 2002Alan J. Tessier Abstract Lakes differ in the quality of food for planktonic grazers, but whether grazers adapt to this resource heterogeneity is poorly studied. We test for evidence of specialization to resource environment within a guild of suspension feeding daphniids inhabiting lakes that differ in food web structure. Using bioassays, we demonstrate that food quality for grazers increases from deep to shallow to temporary lakes, which also represents a gradient of increasing predation risk. We compare growth rates and reproductive performance of daphniid taxa specific to each of the three lake types and find they differ greatly in minimum resource requirements, and in sensitivity to the resource gradient. These differences express a trade-off in ability to exploit rich vs. poor resources. Taxa from deep lakes, poor in resources, have low minimal needs, but they do relatively poorly in rich resource environments. We conclude that grazer distribution is consistent with an adaptive match of exploitation ability to resource environments. [source] Habitat characteristics at bluegill spawning colonies in a South Dakota glacial lakeECOLOGY OF FRESHWATER FISH, Issue 4 2006N. J. C. Gosch Abstract,,, Bluegill (Lepomis macrochirus) primarily reproduce in spawning colonies. We assessed habitat characteristics at 15 bluegill spawning colonies in a South Dakota glacial lake. Nesting sites were visually identified and angling was used to verify the species of nesting fish. Habitat characteristics were measured at each nesting site and compared with those measured at 75 randomly selected sites. In Lake Cochrane, mean water depth of spawning colonies was 1.0 m. Of the 13 habitat characteristics measured, four (substrate type, substrate firmness, vegetation density and dissolved oxygen levels) were significantly different (P , 0.05) between nesting and random sites. Every bluegill nest site contained gravel substrate, despite the availability of muck, sand and rock. Substrate firmness was indexed at 0-cm penetration and vegetation density was low at all nesting sites. Additionally, bluegills selected nesting locations with relatively moderate dissolved oxygen levels. Lake Cochrane bluegill nest sites consisted of shallow, gravel areas with short, low-density, live submergent Chara vegetation. [source] Habitat use and population structure of four native minnows (family Cyprinidae) in the upper Missouri and lower Yellowstone rivers, North Dakota (USA)ECOLOGY OF FRESHWATER FISH, Issue 1 2004T. L. Welker Abstract,,, In 1997 and 1998, sampling was conducted on the Missouri and Yellowstone rivers, North Dakota, to obtain information on the distribution, abundance, and habitat use of the flathead chub (Platygobio gracilis Richardson), sicklefin chub (Macrhybopsis meeki Jordan & Evermann), sturgeon chub (Macrhybopsis gelida Girard), and western silvery minnow (Hybognathus argyritis Girard), four declining fish species (family Cyprinidae) native to the Missouri River basin, USA. The study area consisted of four distinct river segments near the confluence of the Missouri and Yellowstone rivers , three moderately altered segments that were influenced by a main-stem dam and one quasi-natural segment. One moderately altered segment was located at the confluence of the two rivers (mixing-zone segment (MZS)). The other two moderately altered segments were in the Missouri River adjacent to the MZS and extended up-river (above-confluence segment (ACS)) and down-river (below-confluence segment (BCS)) from this segment. The quasi-natural segment (Yellowstone River segment (YRS)) extended up-river from the MZS in the Yellowstone River. Catch rates with the trawl for sicklefin chub and sturgeon chub and catch rates with the bag seine for flathead chub and western silvery minnow were highest in the BCS and YRS. Most sicklefin and sturgeon chubs were captured in the deep, high-velocity main channel habitat with the trawl (sicklefin chub, 97%; sturgeon chub, 85%), whereas most flathead chub and western silvery minnow were captured in the shallow, low-velocity channel border habitat with the bag seine (flathead chub, 99%; western silvery minnow, 98%). Best-fit regression models correctly predicted the presence or absence of sicklefin chub, flathead chub, and western silvery minnow more than 80% of the time. Sturgeon chub presence and absence were predicted correctly 55% of the time. Best-fit regression models fit to fish number data for flathead chub, sicklefin chub, and sturgeon chub and fish catch-per-unit-effort (CPUE) data for flathead chub also provided good fits, with R2 values ranging from 0.32 to 0.55 (P < 0.0001). The higher density and catch of the four native minnows in the YRS and BCS suggest that these two segments are better habitat than the ACS and MZS. [source] Voltammetry as an Alternative Tool for Trace Metal Detection in Peloid Marine SedimentsELECTROANALYSIS, Issue 13 2007Irena Ciglene Abstract Here was demonstrated for the first time a possible application of abrasive stripping voltammetry in the direct measurement of trace metals in anoxic, sulfidic marine sediments (peloid mud) from a small and shallow (0.2,1,m) marine lagoon in Central Dalmatia, Croatia. Trace amounts of sample compounds are transferred to the graphite electrode surface and electrochemical reduction or oxidation processes are followed by the cyclic voltammetry in seawater or 0.55,M NaCl as electrolyte. After a preelectrolysis at potentials ranging from ,1.0 to ,1.5,V (vs. SCE) a well-defined anodic stripping peak corresponding to the oxidation of metal deposits generated at deposition potentials is obtained around ,0.74,V (vs. SCE). The same samples were studied by anodic stripping voltammetry at the Hg electrode and inductively coupled plasma-mass spectrometer (ICP-MS). ICP-MS showed higher concentrations of trace metals such as Al, Fe, Mo, Mn. A relatively high concentration of reduced sulfur species (RSS) (10,3 M) is determined electrochemically in porewater of the peloid mud, indicating that the magnitude of metal enrichment in the sediments is probably controlled by precipitation with sulfide. [source] Real-time monitoring of intracellular calcium dynamic mobilization of a single cardiomyocyte in a microfluidic chip pertaining to drug discoveryELECTROPHORESIS, Issue 24 2007Xiujun Li Abstract A microfluidic method for real-time quantitative measurement of cellular response pertaining to drug discovery is reported. This method is capable of multiple-step liquid delivery for measuring the drug response of a single cardiomyocyte, due to the improved cell retention by a newly designed chip. The chip, which consists of a cell-retention chamber with a weir structure, was fabricated just by a one-photomask microfabrication procedure followed by on-chip etching. This method differs from the conventional method, which uses two-mask photolithography to fabricate the microchannel (deep etch) and the weir structure (shallow etch). The dimensions of the weir structure have been predicted by a mathematical model, and confirmed by confocal microscopy. Using this microfluidic method, the dynamic [Ca2+]i mobilization in a single cardiomyocyte during its spontaneous contraction was quantified. Furthermore, we measured the cellular response of a cardiomyocyte on (i) a known cardiotonic agent (caffeine), (ii) a cardiotoxic chemotherapeutic drug (daunorubicin), and (iii) an herbal anticancer drug candidate , isoliquiritigenin (IQ) based on the fluorescent calcium measurement. It was found that IQ had produced a less pronounced effect on calcium mobilization of the cardiomyocytes whereas caffeine and daunorubicin had much stronger effects on the cells. These three experiments on cardiomyocytes pertaining to drug discovery were only possible after the improved cell retention provided by the new chip design (MV2) required for multiple-step real-time cellular analysis on a microchip, as compared with our old chip design (MV1). [source] Estrogenic effect of leachates and soil extracts from lysimeters spiked with sewage sludge and reference endocrine disruptersENVIRONMENTAL TOXICOLOGY, Issue 2 2002Halim Dizer Abstract Several experiments were conducted to evaluate the behavior and performance of some potential endocrine disrupters (ECDs). Two in vitro screening assays, one based on MCF7-cell proliferation (E-screen test) and the other on estrogenic receptor activity [enzyme-linked receptor assay (ELRA)], were used for the tests, which were done in lysimeters 80 cm in diameter with depths of 30 cm (shallow) or 90 cm (deep). A sandy soil was used to fill in all lysimeters, which were spiked on the surface with either: (a) a sewage sludge (SS) at a dose equivalent to 20 tons ha,1; (b) a mixture of reference ECDs, comprising 17,- and 17,-estradiol (E2), nonylphenol, octylphenol, and bisphenol A at doses 100 times higher than the maximum concentrations respectively found in the applied SS; or (c) a mixture of ECDs and SS. After percolation of the lysimeters with rain and/or artificial water, five leachates were sampled from each lysimeter during a period of 210 days. Immediately after the lysimeter percolation experiments, four and six soil fractions were dissected from, respectively, the 30-cm and 90-cm lysimeters and extracted by water. Both the leachate and soil extract samples were analyzed for their estrogenicity using the assays indicated above. The E-screen assay was highly sensitive only for some leachate and extract samples but gave no response for most leachates and soil extracts. The results of the ELRA assay suggests a significantly higher estrogenicity of leachate samples from shallow lysimeters compared with that of leachates from deep lysimeters. In contrast, the estrogenic effect measured for soil extracts of shallow lysimeters was lower than that measured for soil extracts of deep lysimeters. The results of the E-screen assay suggests the occurrence of a fast mobilization of applied ECDs and a moderate retardation effect of native ECDs contained in applied SS in the sandy soil used in the lysimeters. In lysimeters spiked with a mixture of SS and ECDs, the washing-out effect of ECDs in the first leachate fraction decreased, but the distribution of ECDs in the lysimeters increased. The relatively high estrogenic impact measured for soil water extracts suggests that the ECDs were mostly associated with water-soluble fractions of organic matter and/or water-suspended fractions of the mineral soil matrix. The application of SS to agricultural and forest fields may determine the immobilization of ECDs in soil or their movement to surface and/or groundwater. Therefore, an endocrine risk of exposure exists for the water and soil organisms. © 2002 Wiley Periodicals, Inc. Environ Toxicol 17: 105,112, 2002; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/tox.10038 [source] Total and soluble fluorine concentrations in relation to properties of soils in New ZealandEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 3 2006P. Loganathan Summary Soil fluorine (F) concentrations continue to increase in agricultural soils receiving regular applications of phosphatic fertilizer. Continued accumulation of soil F poses a risk to grazing ruminants and may pose a future risk to groundwater quality. This paper examines the range of total F (Ft) concentrations and forms of soluble F species and their relationship to selected soil properties in New Zealand agricultural soils. The Ft and soluble F (soil F extracted with water (Fwater) and 0.01 m KCl (FKCl)) concentrations in 27 soil samples (0,75 mm depth) taken from predominantly pasture sites in the North and South Islands of New Zealand were much less than those reported in the literature for sites contaminated with F from industry. The Ft concentrations ranged from 212 to 617 µg F g,1 soil. The F-toxicity risk to grazing animals in farms at these sites through soil ingestion is small at present, but farms with very large Ft concentrations (i.e. > 500 µg F g,1) need to adopt suitable grazing and fertilizer management practices to avoid future F-toxicity risk. The Ft concentration had very strong positive correlations with both total soil P and total soil Cd concentrations, reflecting the link between P fertilizer use and F accumulation in the soils. It also had significant positive correlations with organic matter and amorphous Al oxides contents, indicating that F is strongly bound to Al polymers adsorbed to organic matter and amorphous Al oxides. The Fwater and FKCl concentrations and free F, ion concentrations in water (F,water) and 0.01 m KCl (F,KCl) extracts were generally two and three orders of magnitude, respectively, less than the Ft concentrations and were much less than the concentrations considered phytotoxic. The Fwater and FKCl concentrations were positively related to soil organic matter content and negatively related to soil pH. Regression models relating Fwater and FKCl concentrations to soil organic matter content and soil pH suggest that F can be very soluble in extremely acidic soils (pH(water) < 4.9) with large organic matter contents and therefore F potentially may contaminate groundwater if these soils are also coarse-textured and the water table is shallow. [source] The inherent ,safety-net' of an Acrisol: measuring and modelling retarded leaching of mineral nitrogenEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2002D. Suprayogo Summary The inherent features of Acrisols with their increasing clay content with depth are conducive to reducing nutrient losses by nutrient adsorption on the matrix soil surfaces. Ammonium (NH4+) and nitrate (NO3,) adsorption by a Plinthic Acrisol from Lampung, Indonesia was studied in column experiments. The peak of the H218O breakthrough occurred at 1 pore volume, whereas the median pore volumes for NH4+ and NO3, ranged from 6.4 to 6.9 and 1.1 to 1.6, respectively. The adsorption coefficients (Ka in cm3 g,1) measured were 1.81, 1.51, 1.64 and 1.47 for NH4+ and 0.03, 0.09, 0.10 and 0.17 for NO3,, respectively, in the 0,0.2, 0.2,0.4, 0.4,0.6 and 0.6,0.8 m soil depth layers. The NH4+ and NO3, adsorption coefficients derived from this study were put in to the Water, Nutrient and Light Capture in Agroforestry Systems (WaNuLCAS) model to evaluate their effect on leaching in the context of several cropping systems in the humid tropics. The resulting simulations indicate that the inherent ,safety-net' (retardation mechanism) of a shallow (0.8,1 m) Plinthic Acrisol can reduce the leaching of mineral N by between 5 and 33% (or up to 2.1 g m,2), mainly due to the NH4+ retardation factor, and that the effectiveness in reducing N leaching increases with increasing depth. However, the inherent ,safety-net' is useful only if deep-rooted plants can recover the N subsequently. [source] A COMPARATIVE METHOD FOR STUDYING ADAPTATION TO A RANDOMLY EVOLVING ENVIRONMENTEVOLUTION, Issue 8 2008Thomas F. Hansen Most phylogenetic comparative methods used for testing adaptive hypotheses make evolutionary assumptions that are not compatible with evolution toward an optimal state. As a consequence they do not correct for maladaptation. The "evolutionary regression" that is returned is more shallow than the optimal relationship between the trait and environment. We show how both evolutionary and optimal regressions, as well as phylogenetic inertia, can be estimated jointly by a comparative method built around an Ornstein,Uhlenbeck model of adaptive evolution. The method considers a single trait adapting to an optimum that is influenced by one or more continuous, randomly changing predictor variables. [source] REPLICATED EVOLUTION OF INTEGRATED PLASTIC RESPONSES DURING EARLY ADAPTIVE DIVERGENCEEVOLUTION, Issue 4 2006Kevin J. Parsons Abstract Colonization of a novel environment is expected to result in adaptive divergence from the ancestral population when selection favors a new phenotypic optimum. Local adaptation in the new environment occurs through the accumulation and integration of character states that positively affect fitness. The role played by plastic traits in adaptation to a novel environment has generally been ignored, except for variable environments. We propose that if conditions in a relatively stable but novel environment induce phenotypically plastic responses in many traits, and if genetic variation exists in the form of those responses, then selection may initially favor the accumulation and integration of functionally useful plastic responses. Early divergence between ancestral and colonist forms will then occur with respect to their plastic responses across the gradient bounded by ancestral and novel environmental conditions. To test this, we compared the magnitude, integration, and pattern of plastic character responses in external body form induced by shallow versus open water conditions between two sunfish ecomorphs that coexist in four postglacial lakes. The novel sunfish ecomorph is present in the deeper open water habitat, whereas the ancestral ecomorph inhabits the shallow waters along the lake margin. Plastic responses by open water ecomorphs were more correlated than those of their local shallow water ecomorph in two of the populations, whereas equal levels of correlated plastic character responses occurred between ecomorphs in the other two populations. Small but persistent differences occurred between ecomorph pairs in the pattern of their character responses, suggesting a recent divergence. Open water ecomorphs shared some similarities in the covariance among plastic responses to rearing environment. Replication in the form of correlated plastic responses among populations of open water ecomorphs suggests that plastic character states may evolve under selection. Variation between ecomorphs and among lake populations in the covariance of plastic responses suggests the presence of genetic variation in plastic character responses. In three populations, open water ecomorphs also exhibited larger plastic responses to the environmental gradient than the local shallow water ecomorph. This could account for the greater integration of plastic responses in open water ecomorphs in two of the populations. This suggests that the plastic responses of local sunfish ecomorphs can diverge through changes in the magnitude and coordination of plastic responses. Although these results require further investigation, they suggest that early adaptive evolution in a novel environment can include changes to plastic character states. The genetic assimilation of coordinated plastic responses could result in the further, and possibly rapid, divergence of such populations and could also account for the evolution of genes of major effect that contribute to suites of phenotypic differences between divergent populations. [source] PERSPECTIVE: MODELS OF SPECIATION: WHAT HAVE WE LEARNED IN 40 YEARS?EVOLUTION, Issue 10 2003Sergey Gavrilets Abstract Theoretical studies of speciation have been dominated by numerical simulations aiming to demonstrate that speciation in a certain scenario may occur. What is needed now is a shift in focus to identifying more general rules and patterns in the dynamics of speciation. The crucial step in achieving this goal is the development of simple and general dynamical models that can be studied not only numerically but analytically as well. I review some of the existing analytical results on speciation. I first show why the classical theories of speciation by peak shifts across adaptive valleys driven by random genetic drift run into trouble (and into what kind of trouble). Then I describe the Bateson-Dobzhansky-Muller (BDM) model of speciation that does not require overcoming selection. I describe exactly how the probability of speciation, the average waiting time to speciation, and the average duration of speciation depend on the mutation and migration rates, population size, and selection for local adaptation. The BDM model postulates a rather specific genetic architecture of reproductive isolation. I then show exactly why the genetic architecture required by the BDM model should be common in general. Next I consider the multilocus generalizations of the BDM model again concentrating on the qualitative characteristics of speciation such as the average waiting time to speciation and the average duration of speciation. Finally, I consider two models of sympatric speciation in which the conditions for sympatric speciation were found analytically. A number of important conclusions have emerged from analytical studies. Unless the population size is small and the adaptive valley is shallow, the waiting time to a stochastic transition between the adaptive peaks is extremely long. However, if transition does happen, it is very quick. Speciation can occur by mutation and random drift alone with no contribution from selection as different populations accumulate incompatible genes. The importance of mutations and drift in speciation is augmented by the general structure of adaptive landscapes. Speciation can be understood as the divergence along nearly neutral networks and holey adaptive landscapes (driven by mutation, drift, and selection for adaptation to a local biotic and/or abiotic environment) accompanied by the accumulation of reproductive isolation as a by-product. The waiting time to speciation driven by mutation and drift is typically very long. Selection for local adaptation (either acting directly on the loci underlying reproductive isolation via their pleiotropic effects or acting indirectly via establishing a genetic barrier to gene flow) can significantly decrease the waiting time to speciation. In the parapatric case the average actual duration of speciation is much shorter than the average waiting time to speciation. Speciation is expected to be triggered by changes in the environment. Once genetic changes underlying speciation start, they go to completion very rapidly. Sympatric speciation is possible if disruptive selection and/or assortativeness in mating are strong enough. Sympatric speciation is promoted if costs of being choosy are small (or absent) and if linkage between the loci experiencing disruptive selection and those controlling assortative mating is strong. [source] Reducing sea turtle by-catch in pelagic longline fisheriesFISH AND FISHERIES, Issue 1 2006Eric Gilman Abstract Reducing by-catch of sea turtles in pelagic longline fisheries, in concert with activities to reduce other anthropogenic sources of mortality, may contribute to the recovery of marine turtle populations. Here, we review research on strategies to reduce sea turtle by-catch. Due to the state of management regimes in most longline fisheries, strategies to reduce turtle interactions must not only be effective but also must be commercially viable. Because most research has been initiated only recently, many results are not yet peer-reviewed, published or readily accessible. Moreover, most experiments have small sample sizes and have been conducted over only a few seasons in a small number of fisheries; many study designs preclude drawing conclusions about the independent effect of single factors on turtle by-catch and target catch rates; and few studies consider effects on other by-catch species. In the US North Atlantic longline swordfish fishery, 4.9-cm wide circle hooks with fish bait significantly reduced sea turtle by-catch rates and the proportion of hard-shell turtles that swallowed hooks vs. being hooked in the mouth compared to 4.0-cm wide J hooks with squid bait without compromising commercial viability for some target species. But these large circle hooks might not be effective or economically viable in other longline fisheries. The effectiveness and commercial viability of a turtle avoidance strategy may be fishery-specific, depending on the size and species of turtles and target fish and other differences between fleets. Testing of turtle avoidance methods in individual fleets may therefore be necessary. It is a priority to conduct trials in longline fleets that set gear shallow, those overlapping the most threatened turtle populations and fleets overlapping high densities of turtles such as those fishing near breeding colonies. In addition to trials using large 4.9-cm wide circle hooks in place of smaller J and Japan tuna hooks, other fishing strategies are under assessment. These include: (i) using small circle hooks (, 4.6-cm narrowest width) in place of smaller J and Japan tuna hooks; (ii) setting gear below turtle-abundant depths; (iii) single hooking fish bait vs. multiple hook threading; (iv) reducing gear soak time and retrieval during daytime; and (v) avoiding by-catch hotspots through fleet communication programmes and area and seasonal closures. [source] Seasonal variation in habitat use by salmon, Salmo salar, trout, Salmo trutta and grayling, Thymallus thymallus, in a chalk streamFISHERIES MANAGEMENT & ECOLOGY, Issue 4 2006W. D. RILEY Abstract, A portable multi-point decoder system deployed in a tributary of the River Itchen, a southern English chalk stream, recorded the habitats used by PIT-tagged juvenile salmon, Salmo salar L., trout, Salmo trutta L. and grayling, Thymallus thymallus L., with a high degree of spatial and temporal resolution. The fishes' use of habitat was monitored at 350 locations throughout the stream during September/October 2001 (feeding period) and January/February 2002 (over-wintering period). Salmon parr tended to occupy water 25,55 cm deep with a velocity between 0.4 and 1.0 m s,1. During both autumn and winter, first year salmon (0+ group) were associated with gravel substrate during the daytime and aquatic weed at night. In autumn, 1+ salmon were strongly associated with hard mud substrates during the day and with marginal tree roots at night. In winter, they were located on gravel substrate by day and gravel and mud at night. Trout were associated with a greater range of habitats than salmon, generally occupying deeper and faster water with increasing age. During the autumn, 0+ trout were located along shallow (5,10 cm) and slow (,0.1,0.4 m s,1) margins of the stream, amongst tree roots by day and on silty substrates at night. During winter the 0+ trout occupied silty substrates at all times. As age increased, trout increasingly used coarse substrates; hard mud, gravel and chalk, and weed at night. All age groups of grayling (0+, 1+ and 2+) tended to occupy hard gravel substrate at all times and used deeper and faster water with increasing age. The 1+ and 2+ groups were generally found in water 40,70 cm deep with a velocity between 0.3 and 0.5 ms,1, whilst the 0+ groups showed a preference for shallower water with reduced velocity at night, particularly in the winter. There were greater differences in the habitats used between species and age groups than between the autumn and winter periods, and the distribution of fish was more strongly influenced by substrate type than water depth or velocity. The results are discussed in relation to the habitat requirements of mixed salmonid populations and habitat management. [source] | |||||||||||||||||||||||||||||||||||||||||||