Home About us Contact
|
Home About us Contact | ||
|
|
||
Setup
Kinds of Setup Terms modified by Setup Selected AbstractsExperimental Setup to Evaluate the Performance of Percutaneous Pulmonary Valved Stent in Different Outflow Tract MorphologiesARTIFICIAL ORGANS, Issue 1 2009Riccardo Vismara Abstract Percutaneous pulmonary valve implantation is a potential treatment for right ventricular outflow tract (RVOT) dysfunction. However, RVOT implantation site varies among subjects and the success of the procedure depends on RVOT morphology selection. The aim of this study was to use in vitro testing to establish percutaneous valve competency in different previously defined RVOT morphologies. Five simplified RVOT geometries (stenotic, enlarged, straight, convergent, and divergent) were manufactured by silicone dipping. A mock bench was developed to test the percutaneous valve in the five different RVOTs. The bench consists of a volumetric pulsatile pump and of a hydraulic afterload. The pump is made of a piston driven by a low inertia programmable motor. The hydraulic afterload mimics the pulmonary input impedance and its design is based on a three element model of the pulmonary circulation. The mock bench can replicate different physiological and pathological hemodynamic conditions of the pulmonary circulation. The mock bench is here used to test the five RVOTs under physiological-like conditions: stroke volume range 40,70 mL, frequency range 60,80 bpm. The valved stent was implanted into the five different RVOT geometries. Pressures upstream and downstream of the valved stent were monitored. Flow rates were measured with and without the valved stent in the five mock RVOTs, and regurgitant fraction compared between the different valved stent RVOTs. The percutaneous valved stent drastically reduced regurgitant flow if compared with the RVOT without the valve. RVOT geometry did not significantly influence the flow rate curves. Mean regurgitant fractions varied from 5% in the stenotic RVOT to 7.3% in the straight RVOT, highlighting the influence of the RVOT geometry on valve competency. The mock bench presented in this study showed the ability to investigate the influence of RVOT geometry on the competence of valved stent used for percutaneous pulmonary valve treatment. [source] Dosimetric evaluation and comparison of different RF exposure apparatuses used in human volunteer studiesBIOELECTROMAGNETICS, Issue 1 2008Clémentine M. Boutry Abstract The aim of this study was to provide the information necessary to enable the comparison of exposure conditions in different human volunteer studies published by the research groups at the Universities of Turku, Swinburne, and Zurich. The latter applied a setup optimized for human volunteer studies in the context of risk assessment while the first two applied a modified commercial mobile phone for which detailed dosimetric data were lacking. While the Zurich Setup exposed the entire cortex of the target hemisphere, the other two setups resulted in only very localized exposure of the upper cheek, and concentrated on a limited area of the middle temporal gyrus just above the ear. The resulting peak spatial SAR averaged over 1 g of the cortex was 0.19 W/kg of the Swinburne Setup, and 0.31 W/kg for the Turku Setup, compared to 1 W/kg for the Zurich Setup. The average exposure of the thalamus was 5% and 9% of the Zurich Setup results for the Swinburne and Turku Setups, respectively. In general, the phone-based setup results in only reasonably defined exposures in a very limited area around the maximum exposure; the exposure of the rest of the cortex was low, and may vary greatly as a function of the setup, position, and local anatomy. The analysis confirms the need for a carefully designed exposure setup that exposes the relevant brain areas to a well-defined level in human volunteer studies, and shows that studies can only be properly compared and replicated if sufficiently detailed dosimetric information is available. Bioelectromagnetics 29:11,19, 2008. © 2007 Wiley-Liss, Inc. [source] Extended spatial keyframing for complex character animationCOMPUTER ANIMATION AND VIRTUAL WORLDS (PREV: JNL OF VISUALISATION & COMPUTER ANIMATION), Issue 3-4 2008Byungkuk Choi Abstract As 3D computer animation becomes more accessible to novice users, it makes it possible for these users to create high-quality animations. This paper introduces a more powerful system to create highly articulated character animations with an intuitive setup then the previous research, Spatial Keyframing (SK). As the main purpose of SK was the rapid generation of primitive animation over quality animation, we propose Extended Spatial Keyframing (ESK) that exploits a global control structure coupled with multiple sets of spatial keyframes, and hierarchical relationship between controllers. The generated structure can be flexibly embedded into the given rigged character, and the system enables the given character to be animated delicately by user performance. During the performance, the movement of the highest ranking controllers across the control hierarchy is recorded in layered style to increase the level of detail for final motions. Copyright © 2008 John Wiley & Sons, Ltd. [source] Ptex: Per-Face Texture Mapping for Production RenderingCOMPUTER GRAPHICS FORUM, Issue 4 2008Brent Burley Explicit parameterization of subdivision surfaces for texture mapping adds significant cost and complexity to film production. Most parameterization methods currently in use require setup effort, and none are completely general. We propose a new texture mapping method for Catmull-Clark subdivision surfaces that requires no explicit parameterization. Our method, Ptex, stores a separate texture per quad face of the subdivision control mesh, along with a novel per-face adjacency map, in a single texture file per surface. Ptex uses the adjacency data to perform seamless anisotropic filtering of multi-resolution textures across surfaces of arbitrary topology. Just as importantly, Ptex requires no manual setup and scales to models of arbitrary mesh complexity and texture detail. Ptex has been successfully used to texture all of the models in an animated theatrical short and is currently being applied to an entire animated feature. Ptex has eliminated UV assignment from our studio and significantly increased the efficiency of our pipeline. [source] GPU-Based Nonlinear Ray TracingCOMPUTER GRAPHICS FORUM, Issue 3 2004Daniel Weiskopf In this paper, we present a mapping of nonlinear ray tracing to the GPU which avoids any data transfer back to main memory. The rendering process consists of the following parts: ray setup according to the camera parameters, ray integration, ray-object intersection, and local illumination. Bent rays are approximated by polygonal lines that are represented by textures. Ray integration is based on an iterative numerical solution of ordinary differential equations whose initial values are determined during ray setup. To improve the rendering performance, we propose acceleration techniques such as early ray termination and adaptive ray integration. Finally, we discuss a variety of applications that range from the visualization of dynamical systems to the general relativistic visualization in astrophysics and the rendering of the continuous refraction in media with varying density. Categories and Subject Descriptors (according to ACM CCS): I.3.3 [Computer Graphics]: Picture/Image Generation I.3.7 [Computer Graphics]: Three-Dimensional Graphics and Realism [source] High-throughput screening of chemical exchange saturation transfer MR contrast agentsCONTRAST MEDIA & MOLECULAR IMAGING, Issue 3 2010Guanshu Liu Abstract A new high-throughput MRI method for screening chemical exchange saturation transfer (CEST) agents is demonstrated, allowing simultaneous testing of multiple samples with minimal attention to sample configuration and shimming of the main magnetic field (B0). This approach, which is applicable to diamagnetic, paramagnetic and liposome CEST agents, employs a set of inexpensive glass or plastic capillary tubes containing CEST agents put together in a cheap plastic tube holder, without the need for liquid between the tubes to reduce magnetic susceptibility effects. In this setup, a reference image of direct water saturation spectra is acquired in order to map the absolute water frequency for each volume element (voxel) in the sample image, followed by an image of saturation transfer spectra to determine the CEST properties. Even though the field over the total sample is very inhomogeneous due to air,tube interfaces, the shape of the direct saturation spectra is not affected, allowing removal of susceptibility shift effects from the CEST data by using the absolute water frequencies from the reference map. As a result, quantitative information such as the mean CEST intensity for each sample can be extracted for multiple CEST agents at once. As an initial application, we demonstrate rapid screening of a library of 16 polypeptides for their CEST properties, but in principle the number of tubes is limited only by the available signal-noise-ratio, field of view and gradient strength for imaging. Copyright © 2010 John Wiley & Sons, Ltd. [source] Experimental Study and Modelling of Formation and Decay of Active Species in an Oxygen DischargeCONTRIBUTIONS TO PLASMA PHYSICS, Issue 1 2005A.-M. Diamy Abstract A microwave (2.45 GHz) oxygen discharge (3 hPa, 150 W, 50 mL.min,1) is studied by optical emission spectroscopy of O(5P) (line 777.4 nm) and of the atmospheric system of O2(head-line 759.4 nm). Calibration of the spectral response of the optical setup is used to determine the concentrations of O(5P) and O2(b). The concentration of the O(5P) atoms is in the range 108,109 cm,3 and the concentration of the O2(b) molecules is in the range 1014 , 2 × 1014 cm,3 along the discharge tube. An attempt is made to simulate the experimental results by using coupling the Boltzmann equation, homogeneous energy transfer V-V and V-T, heterogeneous reactions on the walls (energy transfer and recombination of atoms) and a kinetic scheme (electronic transfer and chemical reactions). The Boltzmann equation includes momentum transfer, inelastic and superelastic processes and e-e collisions. V-V and V-T transfer equations are obtained from the SSH theory and the kinetic scheme includes 65 reactions with 17 species [electrons e, ions O, and O2,, fundamental electronic neutral species O(3P), O2, O2(X,v), O3 and excited neutral species O2(a), O2(b), O2(A), O(1D), O(1S), O(5P), O(4d 5Do), O(5s 5So), O(3d 5Do) and O(4s 5So)]. A fair agreement between experimental results and modelling is obtained with the following set of fitting values: , heterogeneous deactivation coefficient for O2(b) , = 2.6 × 10,2; , rate constant of reaction [O(1D) + O(3P) , 2 O(3P)] k34 = 1.4 × 10,11 cm3.s,1; , electron concentration in the range 1010 , 1011 cm,3. Modelling shows that the recombination coefficient for oxygen atoms on the silica wall (range 1.4 × 10,3 , 0.2 × 10,3) is of the same order as the values obtained in a previous paper and that the ratio ([O] / 2 [O2]initial) is about 33,50%. (© 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] High Density Cascaded Arc Produced Plasma Expanding in a Low Pressure RegionCONTRIBUTIONS TO PLASMA PHYSICS, Issue 5-6 2004R. P. Dahiya Abstract Experimental measurements made in thermal expanding argon, nitrogen and hydrogen plasmas with particular reference to molecular kinetics, surface nitriding and intense flux in magnetic field are discussed. The plasma is generated in a cascaded arc source. In the presence of molecular species (H2 / N2) dissociative recombination reactions involving rovibrationally excited molecules contribute to a rapid decay of the plasma species, especially for hydrogen system. A combination of nitrogen and hydrogen plasma gives an efficient plasma nitriding process, which has been applied for case hardening of machinery components. In another setup a strong axial magnetic field (0.4 - 1.6 T) contains and substantially prolongs the plasma beam in the chamber. In the presence of the magnetic field, an additional current drawn through the plasma beam using a biased substrate and a ring creates dense low temperature plasma giving a new unexplored plasma regime. The plasma kinetics are modified in this regime from the recombining to the ionising mode. When the additional current in the argon plasma beam exceeds 30 A, its light emission is predominantly in the blue region. With the additional current and magnetic field, the emission intensity of H, and other lines arising from higher energy levels in the hydrogen Balmer series is enhanced. (© 2004 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Analysis of epitaxial laterally overgrown silicon structures by high resolution x-ray rocking curve imagingCRYSTAL RESEARCH AND TECHNOLOGY, Issue 5 2009B. Heimbrodt Abstract Spatially resolved rocking curve imaging has been used to analyze laterally overgrown silicon layers grown by liquid phase epitaxy. We were able to study both the overgrown layer as well as the strain fluctuations of the Si substrate underneath by means of a tabletop x-ray topographic setup. The strain-field analysis reveals relative changes of the lattice parameter up to 3.5×10 -6 in the silicon substrate underneath the overgrown layer in particular regions and a down bending of both wings of the epitaxial overgrown layers. (© 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Near-infrared dyes for six-color immunophenotyping by laser scanning cytometryCYTOMETRY, Issue 3 2002Andreas O.H. Gerstner Abstract Background To adequately analyze the complexity of the immune system and reduce the required sample volume for immunophenotyping in general, more measurable colors for the discrimination of leukocyte subsets are necessary. Immunophenotyping by the laser scanning cytometer (LSC), a slide-based cytometric technology, combines cell detection based on multiple colors with their subsequent visualization without the need for physical cell sorting. In the present study, the filter setting of the LSC was adapted for the measurement of the far-red emitting dye cyanine 7 (Cy7), thereby increasing the number of measurable commercially available fluorochromes. Methods The optical filters of the LSC were replaced,photomultiplier (PMT) 3/allophycocyanin (APC): 740-nm dichroic long pass, and 670-/55-nm bandpass; PMT 4/Cy7: 810-/90-nm bandpass. Peripheral blood leukocytes were stained directly by fluorochrome-labeled antibodies or by indirect staining. The tandem dyes of Cy7 (phycoerythrin [PE]-Cy7, APC-Cy7) and the fluorochromes fluorescein isothiocyanate (FITC), PE, PE-Cy5, and APC were tested alone and in different combinations. Results With the new filter combination and tandem fluorochromes, Cy7 was measurable at 488-nm (argon laser) or 633-nm (helium-neon laser) excitation. Resolution was in the range of FITC for PE-Cy7 but approximately 30% lower for APC-Cy7; spillover into the respective donor fluorochrome channel for both tandem dyes was prominent. A six-color panel for leukocyte subtyping was designed. Conclusions With this adaptation, it is possible to measure the tandem conjugates PE-Cy7 and APC-Cy7. This new setup opens the way for six-color immunophenotyping by LSC. Cytometry 48:115,123, 2002. © 2002 Wiley-Liss, Inc. [source] Economic Production Lot Sizing with Periodic Costs and Overtime,DECISION SCIENCES, Issue 3 2001E. Powell Robinson Jr Abstract Traditional approaches for modeling economic production lot-sizing problems assume that a single, fixed equipment setup cost is incurred each time a product is run, regardless of the quantity manufactured. This permits multiple days of production from one production setup. In this paper, we extend the model to consider additional fixed charges, such as cleanup or inspection costs, that are associated with each time period's production. This manufacturing cost structure is common in the food, chemical, and pharmaceutical industries, where process equipment must be sanitized between item changeovers and at the end of each day's production. We propose two mathematical problem formulations and optimization algorithms. The models' unique features include regular time production constraints, a fixed charge for each time period's production, and the availability of overtime production capacity. Experimental results indicate the conditions under which our algorithms' performance is superior to traditional approaches. We also test the procedures on a set of lot-sizing problems facing a national food processor and document their potential economic benefit. [source] Ergonomics in Office-Based Surgery: A Survey-Guided Observational StudyDERMATOLOGIC SURGERY, Issue 11 2007ADAM C. ESSER MD BACKGROUND The practice of office-based surgery is increasing in many specialties. OBJECTIVE Using Mohs surgery as a model, we investigated the role of ergonomics in office-based surgery to limit work-related musculoskeletal disorders. METHODS All Mayo Clinic surgeons currently performing Mohs surgery and Mohs surgeons trained at Mayo Clinic between 1990 and 2004 received a questionnaire survey between May 2003 and September 2004. A sample of respondents were videotaped during surgery. The main outcome measures were survey responses and an ergonomist's identification of potential causes of musculoskeletal disorders. RESULTS All 17 surgeons surveyed responded. Those surveyed spend a mean of 24 hours per week in surgery. Sixteen said they had symptoms caused by or made worse by performing surgery. Symptom onset occurred on average at age 35.4 years. The most common complaints were pain and stiffness in the neck, shoulders, and lower back and headaches. Videotapes of 6 surgeons revealed problems with operating room setup, awkward posture, forceful exertion, poor positioning, lighting, and duration of procedures. CONCLUSION Symptoms of musculoskeletal injuries are common and may begin early in a physician's career. Modifying footwear, flooring, table height, operating position, lighting, and surgical instruments may improve the ergonomics of office-based surgery. [source] Aortic Valve Closure: Relation to Tissue Velocities by Doppler and Speckle Tracking in Patients with Infarction and at High Heart RatesECHOCARDIOGRAPHY, Issue 4 2010Ph.D., Svein A. Aase M.Sc. Aim: To resolve the event in tissue Doppler (TDI)- and speckle tracking-based velocity/time curves that most accurately represent aortic valve closure (AVC) in infarcted ventricles and at high heart rates. Methods: We studied the timing of AVC in 13 patients with myocardial infarction and in 8 patients at peak dobutamine stress echo. An acquisition setup for recording alternating B-mode and TDI image frames was used to achieve the same frame rate in both cases (mean 136.7 frames per second [FPS] for infarcted ventricles, mean 136.9 FPS for high heart rates). The reference method was visual assessment of AVC in the high frame rate narrow sector B-mode images of the aortic valve. Results: The initial negative velocities after ejection in the velocity/time curves occurred before AVC, 44.9 ± 21.0 msec before the reference in the high heart rate material, and 25.2 ± 15.2 msec before the reference in the infarction material. Using this time point as a marker for AVC may cause inaccuracies when estimating end-systolic strain. A more accurate but still a practical marker for AVC was the time point of zero crossing after the initial negative velocities after ejection, 5.4 ± 15.3 msec before the reference in high heart rates and 8.2 ± 12.9 msec after the reference in the infarction material. Conclusion: The suggested marker of AVC at high heart rate and in infarcted ventricles was the time point of zero crossing after the initial negative velocities after ejection in velocity/time curves. (Echocardiography 2010;27:363-369) [source] Does morphological variation between young-of-the-year perch from two Swedish lakes depend on genetic differences?ECOLOGY OF FRESHWATER FISH, Issue 2 2010M. Heynen Heynen M, Hellström G, Magnhagen C, Borcherding J. Does morphological variation between young-of-the-year perch from two Swedish lakes depend on genetic differences? Ecology of Freshwater Fish 2010: 19: 163,169. © 2009 John Wiley & Sons A/S Abstract,,, Different local environmental conditions have often been found to generate phenotypic diversity. In the present study we examined morphological differences between young-of-the-year perch from two lake populations with differences in size-specific predation risk. A common garden setup was used to examine the genetic and environmental components of the morphological variation. We found differences in head and jaw length and slight differences in body depth between the wild young-of-the-year perch from Lake Ängersjön and Lake Fisksjön. The differences found between the wild fish from the two lakes were not maintained under common garden rearing. The observed morphological divergence between the wild young-of-the-year perch from Lake Ängersjön and Lake Fisksjön seems to stem mainly from a plastic response to different environmental conditions in the two lakes. It is clear that the morphological traits are not influenced by direct reaction to the size-specific risk of cannibalism, but probably stem from a combination of different environment characteristics, including resource and habitat use, and the density of other piscivores, such as pike. [source] The Co-initial Swap Market ModelECONOMIC NOTES, Issue 2 2004Stefano Galluccio In this paper, we introduce a novel approach to the pricing and the risk management of generic European style interest-rate derivatives. This new model has great flexibility and has the advantage of avoiding complex model calibration techniques typical of standard short-rate models. Dynamics is assigned on a set of co-initial forward swap rates, and arbitrage-free restrictions are determined in a normal and lognormal setup. Model implementation and calibration are discussed, and details of two example applications are also presented. (J.E.L.: G12, G13). [source] Preparation of Nanogapped Gold Nanoparticle Array for DNA DetectionELECTROANALYSIS, Issue 4 2008Shiho Tokonami Abstract A novel DNA detection technique using a gold nanoparticle array film electrode has been reported here. The gold nanoparticles molecularly linked with binder molecule (1,10-decanedithiol) were separated 1.3,nm from each other, and the DNA conductivity change from single to double strand was measured by monitoring a voltage drop across the particles, between which a probe of a 12-mer oligonucleotide was immobilized. In adding a complementary oligonucleotide on the nanoparticle film chip, an immediate decrease in the film resistance (ca. 1.4 ,) due to a hybridization event occurred in a reproducible manner with this simple setup. In the paper, we have an interest in the primary sensing properties; effect of the film resistance on the sensor response, dependence of the resistance change on the DNA concentration, and the performance of the system for DNA detection including single nucleotide polymorphisms were described. [source] CE-ESI-MS/MS as a rapid screening tool for the comparison of protein,ligand interactionsELECTROPHORESIS, Issue 7 2010Thomas Hoffmann Abstract In drug development, the combinatorial synthesis of drug libraries is common use, therefore efficient tools for the characterization of drug candidates and the extent of interaction between a drug and its target protein is a central question of analytical interest. While biological activity is tested today by enzyme assays, MS techniques attract more and more attention as an alternative for a rapid comparison of drug,target interactions. CE enables the separation of proteins and drug,enzyme complexes preserving their physiological activity in aqueous media. By hyphenating CE with ESI-MS/MS, the binding strength of enzyme inhibitors can be deduced from MS/MS experiments, which selectively release the inhibitor from the drug,target complex after CID. In this study, ,-chymotrypsin (CT), a serine protease, was chosen as a model compound. Chymostatin is a naturally occurring peptide aldehyde binding to CT through a hemiacetal bond and electrostatic interaction. First, a CE separation was developed, which allows the analysis of ,-CT and a chymotrypsin,chymostatin complex under MS-compatible conditions. The use of neutral-coated CE capillaries was mandatory to reduce analyte,wall interactions. ESI-quadrupole ion trap-MS was worked out to demonstrate the selective drug release after CID. Fragmentation of the drug,enzyme complex was monitored in dependence from the excitation energy in the ion trap, leading to the V50 voltage that enables 50% complex fragmentation as a reference value for chymotrypsin,chymostatin complex. A stable CE-ESI-MS/MS setup was established, which preserves the drug,enzyme complexes during ionization,desolvation processes. With this optimized setup, different CT inhibitors could be investigated and compared. [source] Use of quasi-isoelectric buffers as anolyte and catholyte to improve capillary isoelectric focusing performancesELECTROPHORESIS, Issue 8 2008Martine Poitevin Abstract The use of quasi-isoelectric anolytes and catholytes has been investigated to improve CIEF performances. Narrow pH cuts of carrier ampholytes (NC) have been compared to more conventional couples of anolytes/catholytes (phosphoric acid/sodium hydroxide and glutamic acid/lysine). First, a CIEF setup that consists in a bare silica capillary and 70:30 water/glycerol separation medium has been used. The experiments have shown that when using NC instead of more classical anolytes and catholytes, an increase in the protein detection time was observed and the resolutions obtained for neutral and acidic proteins were doubled. Moreover, according to the NC fraction used, the resolution was modified. In order to investigate further the mechanisms involved, a second setup using a capillary coated with hydroxypropylcellulose was used. With this setup no difference has been observed when changing anolyte and catholyte nature. A simple methodology has then been developed to evaluate EOF during focusing and mobilization steps of CIEF experiments. It highlighted the crucial role played by EOF when using a bare silica capillary. EOF indeed decreased by 33% during mobilization step when using NC instead of classical anolytes and catholytes. [source] A fully automated 2-D LC-MS method utilizing online continuous pH and RP gradients for global proteome analysisELECTROPHORESIS, Issue 23 2007Hu Zhou Abstract The conventional 2-D LC-MS/MS setup for global proteome analysis was based on online and offline salt gradients (step and continuous) using strong-cation-exchange chromatography in conjunction with RP chromatography and MS. The use of the online system with step salt elution had the possibility of resulting in peptide overlapping across fractions. The offline mode had the option to operate with continuous salt gradient to decrease peak overlap, but exhibited decreased robustness, lower reproducibility, and sample loss during the process. Due to the extensive washing requirement between the chromatography steps, online continuous gradient was not an option for salt elution. In this report, a fully automated, online, and continuous gradient (pH continuous online gradient, pCOG) 2-D LC-MS/MS system is introduced that provided excellent separation and identification power. The pH gradient-based elution provided more basic peptides than that of salt-based elution. Fraction overlap was significantly minimized by combining pH and continuous gradient elutions. This latter approach also increased sequence coverage and the concomitant confidence level in protein identification. The salt and pH elution-based 2-D LC-MS/MS approaches were compared by analyzing the mouse liver proteome. [source] Fast quantitative determination of diuretic drugs in tablets and human urine by microchip electrophoresis with native fluorescence detectionELECTROPHORESIS, Issue 16 2007Kamal Tolba Abstract Microchip electrophoresis (MCE) with native fluorescence detection has been applied for the fast quantitative analysis of pharmaceutical formulations. For this purpose, methods for fast separation and sensitive detection of the unlabeled diuretic drugs, amiloride, triamterene, bendroflumethiazide (BFMTZ), and bumetanide were developed. An epifluorescence setup was used enabling the coupling of different lasers into a commercial fluorescence microscope. The detection sensitivity of different excitation light sources was compared utilizing either a HeCd laser (,exc,=,325,nm), a frequency quadrupled Nd:YAG laser (,exc,=,266,nm), or a mercury lamp (,exc,=,330,380,nm). At optimal conditions using the HeCd laser, the drugs were separated within 15,s with LODs less than 1,,g/mL for the four compounds. A linear relationship between concentration and peak area was obtained in the concentration range of 0.05,20,,g/mL with a mean correlation coefficient of around 0.996 for all analytes. The method was successfully applied to the analysis of the respective drugs in commercial formulations and in human urine without interference from other constituents. These data show that MCE has a great potential for reliable drug analysis. [source] High MS-compatibility of silver nitrate-stained protein spots from 2-DE gels using ZipPlates and AnchorChips for successful protein identificationELECTROPHORESIS, Issue 10 2007Grit Nebrich Abstract The availability of easy-to-handle, sensitive, and cost-effective protein staining protocols for 2-DE, in conjunction with a high compatibility for subsequent MS analysis, is still a prerequisite for successful proteome research. In this article we describe a quick and easy-to-use methodological protocol based on sensitive, homogeneous, and MS-compatible silver nitrate protein staining, in combination with an in-gel digestion, employing the Millipore 96-well ZipPlate system for peptide preparation. The improved quality and MS compatibility of the generated protein digests, as compared to the otherwise weakly MS-compatible silver nitrate staining, were evaluated on real tissue samples by analyzing 192 Coomassie-stained protein spots against their counterparts from a silver-stained 2-DE gel. Furthermore, the applicability of the experimental setup was evaluated and demonstrated by the analysis of a large-scale MALDI-TOF MS experiment, in which we analyzed an additional ,1000 protein spots from 2-DE gels from mouse liver and mouse brain tissue. [source] CE frontal analysis based on simultaneous UV and contactless conductivity detection: A general setup for studying noncovalent interactionsELECTROPHORESIS, Issue 3 2007Henrik Jensen Dr. Abstract CE frontal analysis (CE-FA) has been established as a powerful tool to study noncovalent interactions between macromolecules and small molecules such as drug substances or pharmaceutical excipients. However, when using traditional commercial CE instrumentation, a serious drawback is related to the fact that only UV-active compounds can be studied. In recent years, contactless conductivity detection has become an attractive alternative to UV detection in CE due to its high versatility. In this study, we combine contactless conductivity detection and UV detection in a highly versatile setup for profiling noncovalent interactions between low-molecular-weight molecules and macromolecules. In the case of molecules having a chromophore the setup allows determination of binding constants using two independent detectors. The new contactless conductivity detection cell is compatible with commercial CE instrumentation and is therefore easily implemented in any analysis laboratory with CE expertise. [source] SDS-CGE of proteins in microchannels made of SU-8 filmsELECTROPHORESIS, Issue 18 2006Maria Agirregabiria Abstract This work describes the SDS-CGE of proteins carried out in microchannels made of the negative photoresist EPON SU-8. Embedded electrophoretic microchannels have been fabricated with a multilayer technology based on bonding and releasing steps of stacked SU-8 films. This technology allows the monolithic integration of the electrodes in the device. A high wafer fabrication yield and mass production compatibility guarantees low costs and high reliability. A poly(methyl methacrylate) (PMMA) packaging allows an easy setup and replacement of the device for electrophoresis experiments. In addition, the wire-bonding step is avoided. The electrophoretic mobilities of four proteins have been measured in microchannels filled with polyacrylamide. Different pore sizes have been tested obtaining their Ferguson plots. Finally, a separation of two proteins (20 and 36,kDa) has been carried out confirming that this novel device is suitable for protein separation. A resolution of 2.75 is obtained. This is the first time that this SU-8 microfluidic technology has been validated for SDS-CGE of proteins. This technology offers better separation performance than glass channels, at lower costs and with an easy packaging procedure. [source] Internal electrolyte temperatures for polymer and fused-silica capillaries used in capillary electrophoresisELECTROPHORESIS, Issue 22 2005Christopher J. Evenhuis Abstract Polymers are important as materials for manufacturing microfluidic devices for electrodriven separations, in which Joule heating is an unavoidable phenomenon. Heating effects were investigated in polymer capillaries using a CE setup. This study is the first step toward the longer-term objective of the study of heating effects occurring in polymeric microfluidic devices. The thermal conductivity of polymers is much smaller than that of fused silica (FS), resulting in less efficient dissipation of heat in polymeric capillaries. This study used conductance measurements as a temperature probe to determine the mean electrolyte temperatures in CE capillaries of different materials. Values for mean electrolyte temperatures in capillaries made of New Generation FluoroPolymer (NGFP), poly-(methylmethacrylate) (PMMA), and poly(ether ether ketone) (PEEK) capillaries were compared with those obtained for FS capillaries. Extrapolation of plots of conductance versus power per unit length (P/L) to zero power was used to obtain conductance values free of Joule heating effects. The ratio of the measured conductance values at different power levels to the conductance at zero power was used to determine the mean temperature of the electrolyte. For each type of capillary material, it was found that the average increase in the mean temperature of the electrolyte (,TMean) was directly proportional to P/L and inversely proportional to the thermal conductivity (,) of the capillary material. At 7.5,W/m, values for ,TMean for NGFP, PMMA, and PEEK were determined to be 36.6, 33.8, and 30.7°C, respectively. Under identical conditions, ,TMean for FS capillaries was 20.4°C. [source] Electrophoretically mediated microanalysis with partial filling technique and indirect or direct detection as a tool for inhibition studies of enzymatic reactionELECTROPHORESIS, Issue 7-8 2004Magdaléna Telnarová Abstract The inhibition of the model enzyme, haloalkane dehalogenase from Sphingomonas paucimobilis, was investigated by a combination of electrophoretically mediated microanalysis with a partial filling technique, followed by indirect or direct detection. In this setup, part of the capillary is filled with a buffer suitable for the enzymatic reaction (20 mM glycine buffer, pH 8.6) whereas the rest of the capillary is filled with the background electrolyte optimal for separation of substrates and products. Two different background electrolytes and corresponding detection approaches were used to show the versatility of the developed method. The inhibition effect of 1,2-dichloroethane on the dehalogenation of brominated substrate 1-bromobutane was studied by means of 10 mM chromate , 0.1 mM cetyltrimethylammonium bromide (pH 9.2) in combination with indirect detection or 20 mM ,-alanine , hydrochloric acid (pH 3.5) in combination with direct detection. The method was used to estimate the inhibition constant KI (0.44 mM by indirect detection and 0.63 mM by of direct detection) and to determine the inhibition type. Compared to spectrophotometric and other discontinuous assays, the method is rapid, can be automated, and requires only small amount of reagents that is especially important in the case of enzymes and inhibitors. [source] Development of Live Cell Chips to Monitor Cell Differentiation ProcessesENGINEERING IN LIFE SCIENCES (ELECTRONIC), Issue 1 2008C. Maercker Abstract A big demand exists for high-throughput functional in vitro assays which can measure cellular phenotypes by molecular methods and therefore improve the resources of primary cells for cell therapy, tissue engineering and high-content screenings in drug development. This approach focuses on cellular adhesion which is an important differentiation process during homing of stem cells. Moreover, it is a promising method especially for adherent cells which are not accessible by classical cell sorting methods. The chip design includes a housing with electrodes to measure electric field densities and impedance, respectively. Moreover, specific coatings of the wells permit a perfect growth of the selected cell types. In parallel, protein biomarkers can be followed by light microscopy. So far, experiments have been started to discriminate between different cell densities and cell types. In addition, after stimulating human cardiac fibroblasts and human umbilical vein endothelial cells, concentrations of proteins involved in adhesion had been increased, and proteins were translocated within the cells. In ongoing experiments, different human cell lines and fibroblastoid mesenchymal stem cells isolated from fat tissue, umbilical cord, or bone marrow are tested in the chip. To optimize the adhesion conditions, the surfaces within the vials of the chip were specifically activated. Microscopy was adjusted to be able to measure cellular morphology in parallel. This concept allows to identify the behavior of mesenchymal stem cells, which cannot be described so far by standard biomarkers. In addition, simulation of the homing process of the cells within its stem cell niche in an in vitro assay is a promising setup for large-scale gain-of-function or loss-of-function screenings in functional genomics as well as for generating precursor cells relevant for the therapy of various diseases. [source] Macroinvertebrate community response to pulse exposure with the insecticide lambda-cyhalothrin using in-stream mesocosmsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 3 2005Lars-Henrik Heckmann Abstract esticides are constantly beingapplied to agricultural catchments, but little is known abouttheir impact onaquatic biota during natural exposure. In the present study, the impact of the pyrethroid lambda-cyhalothrin was studied in an in-stream mesocosm setup. Twice during the summer of 2002, the natural macroinvertebrate community was exposed in situ to a 30-min pulse of lambda-cyhalothrin. Pyrethroid doses were released through a modified drip set with nominal concentrations of 0.10, 1.00, and 10.0 ,g L,1 during the first exposure and 0.05, 0.50, and 5.00 ,g L,1 in the second exposure. Before, during, and after exposure, drifting macroinvertebrates were caught in nets. Quantitative benthic samples were taken both before and on two occasions after exposure. Macroinvertebrate drift increased immediately after the pulse exposure, with total drift being significantly higher at all concentrations. Gammarus pulex, various Ephemeroptera, Leuctra sp., and Simuliidae were some of the taxa showing the most pronounced drift response. Structural change in the community was found only at 5.00 and 10.0 ,g L,1, and recovery occurred within approximately two weeks. The present study may be valuable in assessing extrapolations based on laboratory results as well as in evaluating pyrethroid impact on natural freshwater environments. [source] Mechanisms affecting the dissolution of nonaqueous phase liquids into the aqueous phase in slow-stirring batch systemsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 3 2001Mathias Schluep Abstract Understanding the kinetics of the exchange processes between nonaqueous phase liquids (NALs) and water is important in predicting the fate of anthropogenic compounds such as petroleum hydrocarbons, i.e., benzene, toluene, ethylbenzene, and xylene (BTEX) as well as polynuclear aromatic hydrocarbons (PAHs). Exchange processes occurring in the environment resemble the experimental setup of the slow-stirring method (SSM) designed to determine solubilities and octanol-water partition coefficients. Data obtained from SSM experiments for diesel fuel compounds are interpreted by a linear transfer model that is characterized by an aqueous molecular boundary layer and the water/NAPL equilibrium partition coefficient. For the chosen experimental setup, the boundary layer thickness is 2.42 × 10,2 cm. Typical equilibration times lie between 1 and 2 d. Due to the temperature dependence of the aqueous diffusivity, this time increases with decreasing temperature. Transport within the NAPL phase can slow down the exchange process for the more water-soluble compounds (e.g., benzene) provided that the stirring rate exceeds a critical value. [source] TK/TD dose,response modeling of toxicityENVIRONMETRICS, Issue 5 2007Munni Begum Abstract In environmental cancer risk assessment of a toxic chemical, the main focus is in understanding induced target organ toxicity that may in turn lead to carcinogenicity. Mathematical models based on systems of ordinary differential equations with biologically relevant parameters are tenable methods for describing the disposition of chemicals in target organs. In evaluation of a toxic chemical, dose,response assessment often addresses only toxicodynamics (TD) of the chemical, while its toxicokinetics (TK) do not enter into consideration. The primary objective of this research is to integrate both TK and TD in evaluation of toxic chemicals while performing dose,response assessment. Population models, with hierarchical setup and nonlinear predictors, for TK concentration and TD effect measures are considered. A one-compartment model with biologically relevant parameters, such as organ volume, uptake rate and excretion rate, or clearance, is used to derive the TK predictor while a two parameter Emax model is used as a predictor for TD measures. Inference of the model parameters with nonnegative and assay's Limit of Detection (LOD) constraints was carried out by Bayesian approaches using Markov Chain Monte Carlo (MCMC) techniques. Copyright © 2006 John Wiley & Sons, Ltd. [source] Recrystallization Modeling of AA8XXX Alloys with Cellular Automata Considering Recovering Kinetics,ADVANCED ENGINEERING MATERIALS, Issue 3 2010Carmen Schäfer A through-process modeling scheme for the prediction of recrystallization textures and microstructures after final annealing, subsequent to cold rolling is proposed and applied to a commercial AlFeSi alloy. The heart of the setup is a cellular automaton for modeling of recrystallization which considers changes in dislocation density by recovery and changes in Zener and solute drag due to microchemistry evolution. However, recrystallization is the crucial point in the whole setup, since it leads to significant changes in microstructure and texture. The simulated results are compared to experiments. [source] | |||||||||||||||||||||||||||||||||||||||||||||||||