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Sensitive Techniques (sensitive + techniques)
Selected AbstractsEnteroviruses and type 1 diabetesDIABETES/METABOLISM: RESEARCH AND REVIEWS, Issue 6 2003Ruben Varela-Calvino Abstract The development of type 1 diabetes mellitus (T1DM) has been linked to exposure to environmental triggers, with Enteroviruses (EV) historically considered the prime suspects. Early serological studies suggested a link between EV infections and the development of T1DM and, though controversial, have been bolstered by more recent studies using more sensitive techniques such as direct detection of the EV genome by RT-PCR in peripheral blood. In this review, we consider the weight of evidence that EV can be considered a candidate trigger of T1DM, using three major criteria: (1) is EV infection associated with clinical T1DM, (2) can EV trigger the development of autoimmunity and (3) what would explain the putative association? Copyright © 2003 John Wiley & Sons, Ltd. [source] LC-MS: a powerful tool in workplace drug testingDRUG TESTING AND ANALYSIS, Issue 3 2009E. Gallardo Abstract Workplace drug testing is a well-established application of forensic toxicology and it aims to reduce workplace accidents caused by affected workers. Several classes of abused substances may be involved, such as alcohol, amphetamines, cannabis, cocaine, opiates and also prescription drugs, such as benzodiazepines. The use of alternative biological specimens such as hair, oral fluid or sweat in workplace drug testing presents several advantages over urinalysis,mainly the fact that sample collection can be performed easily without infringing on the examinee's privacy, so the subject is more likely to perform the test. However, drugs are usually present in these alternative specimens at low concentrations and the amount of sample available for analysis is small. The use of highly sensitive techniques is therefore necessary. In fact, the successful interface of liquid chromatography with mass spectrometry (LC-MS) has brought a new light into bioanalytical and forensic sciences as it allows the detection of drugs and metabolites at concentrations that are difficult to analyse using the more commonly adopted GC-MS based techniques. This paper will discuss the importance of LC-MS in supporting workplace drug-testing programmes. The combination of LC-MS with innovative instrumentation such as triple quadrupoles, ion traps and time-of-flight mass spectrometers will also be focused. Copyright © 2009 John Wiley & Sons, Ltd. [source] Interpreting DNA Evidence: A ReviewINTERNATIONAL STATISTICAL REVIEW, Issue 3 2003L.A. Foreman Summary The paper provides a review of current issues relating to the use of DNA profiling in forensic science. A short historical section gives the main statistical milestones that occurred during a rapid development of DNA technology and operational uses. Greater detail is then provided for interpretation issues involving STR DNA profiles, including: , methods that take account of population substructure in DNA calculations; , parallel work carried out by the US National Research Council; , the move away from multiple independence testing in favour of experiments that demonstrate the robustness of casework procedures; , the questionable practice of source attribution ,with reasonable scientific certainty'; , the effect on the interpretation of profiles obtained under increasingly sensitive techniques, the LCN technique in particular; , the use of DNA profiles as an intelligence tool; , the interpretation of DNA mixtures. Experience of presenting DNA evidence within UK courts is also discussed. The paper then summarises a generic interpretation framework based on the concept of likelihood ratio within a hierarchy of propositions. Finally the use of Bayesian networks to interpret DNA evidence is reviewed. Résumé Cet article présente un inventaire des questions relativesá l'utilisation du profilage ADN dans la science légale. Une courte section historique décrit les principales étapes statistiques qui ont eu lieu pendant le rapide développement de la technologie ADN et ses utilisations opérationnelles. De plus grands détails sont ensuite donnés pour l'interprétation de questions sur les profils AND STR, ce qui inclut: ,les méthodes qui tiennent compte des sous-structures de population dans les calculs ADN; ,le travail conduit en paralléle par le Conseil de Recherche Nationale des Etats-Unis (NRC); ,l'évolution depuis les tests d'indépendance multiple vers des expériences qui démontrent la robustesse des procédures; ,la pratique contestable de l'attribution de source avec "certitude scientifique raisonnable"; ,l'effet de l'interprétation des profils obtenus sous techniques de plus en plus sensibles, la technique LCN en particulier ,l'utilisation de profils ADN comme outil d'intelligence; ,l'interprétation de mélanges ADN. L'expérience de ce type de preuve dans les tribunaux britanniques sera également présentée et commentée. L'article présentera un cavenas d'interprétation centré sur le concept de rapport de vraisemblance, inscrit dans une hérarchie de propositions. Finalement, l'utilisation de réseaux Bayesien pour interpréter la preuve par ADN sera abordée. [source] Intracavity Laser Absorption Spectroscopy for flame diagnosticsISRAEL JOURNAL OF CHEMISTRY, Issue 2 2007Igor Rahinov Intracavity Laser Absorption Spectroscopy (ICLAS) is one of the most sensitive techniques in absorption spectroscopy. Application of this technique to combustion diagnostics offers many important advantages. Since ICLAS is an absorption-based method, it is not limited by the quenching and predissociation effects that compromise the sensitivity of Laser Induced Fluorescence (LIF), one of the most sensitive and widespread techniques applied in combustion diagnostics. For that reason, radicals that are subject to strong collisional quenching or predissociation, such as 1CH2 and HCO, can be measured by ICLAS with sensitivity much greater than that of LIF. For the same reason, ICLAS also possesses better sensitivity for NH and HNO. The present paper overviews the ICLAS measurements performed during the last decade in our laboratory and also presents recent results: first-time detection of the HSO radical in flames by ICLAS and application of Fiber Laser Intracavity Absorption Spectroscopy (FLICAS) based on Er-doped fiber laser for in-situ detection of ammonia and hydrogen cyanide in a low-pressure methane/air flame doped with a small amount of ammonia. Avenues for future research are discussed. [source] High-frequency mode conversion technique for stiff lesion detection with magnetic resonance elastography (MRE)MAGNETIC RESONANCE IN MEDICINE, Issue 6 2009Yogesh K. Mariappan Abstract A novel imaging technique is described in which the mode conversion of longitudinal waves is used for the qualitative detection of stiff lesions within soft tissue using magnetic resonance elastography (MRE) methods. Due to the viscoelastic nature of tissue, high-frequency shear waves attenuate rapidly in soft tissues but much less in stiff tissues. By introducing minimally-attenuating longitudinal waves at a significantly high frequency into tissue, shear waves produced at interfaces by mode conversion will be detectable in stiff regions, but will be significantly attenuated and thus not detectable in the surrounding soft tissue. This contrast can be used to detect the presence of stiff tissue. The proposed technique is shown to readily depict hard regions (mimicking tumors) present in tissue-simulating phantoms and ex vivo breast tissue. In vivo feasibility is demonstrated on a patient with liver metastases in whom the tumors are readily distinguished. Preliminary evidence also suggests that quantitative stiffness measurements of stiff regions obtained with this technique are more accurate than those from conventional MRE because of the short shear wavelengths. This rapid, qualitative technique may lend itself to applications in which the localization of stiff, suspicious neoplasms is coupled with more sensitive techniques for thorough characterization. Magn Reson Med, 2009. © 2009 Wiley-Liss, Inc. [source] Evaluation of different RNA extraction methods for small quantities of plant tissue: Combined effects of reagent type and homogenization procedure on RNA quality-integrity and yieldPHYSIOLOGIA PLANTARUM, Issue 1 2006Mary Portillo Highly sensitive techniques for transcriptome analysis, such as microarrays, complementary DNA-amplified fragment length polymorphisms (cDNA-AFLPs), and others currently used in functional genomics require a high RNA quality and integrity, as well as reproducibility among extractions of replicates from the same tissue. There are, however, few technical papers comparing different homogenization techniques and reagents to extract RNA from small quantities of plant tissue. We extracted RNA from tomato seedlings with the three different commercial reagents TRIZOL LS®, TRIZOL®, and TRI Reagent® in combination with pulverization, homogenization-maceration in a mortar, and homogenization with mild vibration plus glass beads, and evaluated total RNA integrity-quality and yield. Pulverization under liquid nitrogen combined with TRIZOL LS® as extraction reagent and homogenization-maceration in mortar with TRI Reagent®, are the procedures that rendered higher RNA yield, integrity and quality, as well as reproducibility among independent RNA extractions. In contrast, short mild vibration pulses (4500 r.p.m. for 5 s) mixed with glass beads, rendered low extraction efficiency and caused, in most cases, partial RNA degradation. [source] Prevalence of viral infection detected by PCR and RT-PCR in patients with acute exacerbation of COPD: A systematic reviewRESPIROLOGY, Issue 3 2010Anant MOHAN ABSTRACT Background and objective: Viruses are important aetiological agents of acute exacerbation of COPD (AECOPD). Their reported prevalence varies from region to region. This systematic review calculated the prevalence of respiratory viral infections in AECOPD. Methods: A systematic search was performed using Medline, and references of relevant articles and conference proceedings were hand searched. Articles for review were selected based on the following criteria: (i) prospective or cross-sectional study, (ii) original research, (iii) viral detection used the highly sensitive techniques of PCR and/or Reverse Transcriptase PCR (RT-PCR), (iv) viral prevalence in AECOPD defined, and (v) full paper available in English. We assessed the study quality and extracted data independently and in duplicate using a pre-defined data extraction form. Weighted mean prevalence (WMP) was calculated and a forest plot was constructed to show the dispersion. Results: Eight studies met the inclusion criteria. The WMP of respiratory viral infection in AECOPD was 34.1% (95% CI: 23.9,44.4). picornavirus was the most commonly detected virus with WMP 17.3% (95% CI: 7.2,27.3), followed by influenza; 7.4% (95% CI: 2.9,12.0), respiratory syncytial virus; 5.3% (95% CI: 1.6,9.0), corona viruses; 3.1% (95% CI: 0.4,5.8), parainfluenza; 2.6% (95% CI: 0.4,4.8), adenovirus; 1.1% (95% CI: ,1.1 to 3.3), and human metapneumovirus; 0.7% (95% CI: ,0.3 to 1.8). Maximum WMP was observed in studies from Europe followed by the USA, Australia and Asia. Picorna was the most common virus detected in Western countries whereas influenza was most common in Asia. Conclusions: This systematic review demonstrated that viruses are strongly associated with AECOPD, with the highest detection rates of viruses being in Europe. The geographical epidemiology of viruses may have important therapeutic implications for management of AECOPD. [source] Candidate's Thesis: Direct Evidence of Bacterial Biofilms in Otitis Media,THE LARYNGOSCOPE, Issue 12 2001J. Christopher Post MD Abstract Objectives/Hypothesis Bacteriologic studies of otitis media with effusion (OME) using highly sensitive techniques of molecular biology such as the polymerase chain reaction have demonstrated that traditional culturing methods are inadequate to detect many viable bacteria present in OME. The presence of pathogens attached to the middle-ear mucosa as a bacterial biofilm, rather than as free-floating organisms in a middle-ear effusion, has previously been suggested to explain these observations. The suggestion has been speculative, however, because no visual evidence of such biofilms on middle-ear mucosa has heretofore been collected. The hypotheses motivating the current study were: 1) biofilms of nontypable Hemophilus influenzae will form on the middle-ear mucosa of chinchillas in an experimental model of OME, 2) these biofilms will exhibit changes in density or structure over time, and 3) biofilms are also present on tympanostomy tubes in children with refractory post-tympanostomy otorrhea. The objective of this study was to collect visual evidence of the formation of bacterial biofilms in these situations. Study Design Laboratory study of bacteriology in an animal model and on medical devices removed from pediatric patients. Methods Experimental otitis media was induced in chinchillas by transbullar injection of nontypable H. influenzae. Animals were killed in a time series and the surface of the middle-ear mucosa was examined by scanning electron microscopy (SEM) for the presence of bacterial biofilms. Adult and fetal chinchilla uninfected controls were similarly examined for comparison. In addition, tympanostomy tubes that had been placed in children's ears to treat OME and removed after onset of refractory otorrhea or other problems were examined by SEM and by confocal scanning laser microscopy for bacterial biofilms, and compared with unused control tubes. Results Bacterial biofilms were visually detected by SEM on the middle-ear mucosa of multiple chinchillas in which H. influenzae otitis media had been induced. Qualitative evaluation indicated that the density and thickness of the biofilm might increase until at least 96 hours after injection. The appearance of the middle-ear mucosa of experimental animals contrasted with that of uninjected control animals. Robust bacterial biofilms were also visually detected on tympanostomy tubes removed from children's ears for clinical reasons, in contrast with unused control tubes. Conclusions Bacterial biofilms form on the middle-ear mucosa of chinchillas in experimentally induced H. influenzae otitis media and can form on tympanostomy tubes placed in children's ears. Such biofilms can be directly observed by microscopy. These results reinforce the hypothesis that the bacterial aggregates called biofilms, resistant to treatment by antibiotics and to detection by standard culture techniques, may play a major etiologic role in OME and in one of its frequent complications, post-tympanostomy otorrhea. [source] | |||||||||||||