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Segregating Populations (segregating + population)
Selected AbstractsStrong evidence for a fire blight resistance gene of Malus robusta located on linkage group 3PLANT BREEDING, Issue 5 2007A. Peil Abstract Fire blight (FB), caused by the Gram-negative bacterium Erwinia amylovora is a dangerous disease on pome fruit, including apple. The FB-susceptible cultivar ,Idared' was crossed with the resistant wild species clone Malus × robusta 5. A segregating population of 146 progeny has been tested by artificial shoot inoculation for susceptibility to FB. Progeny were infected from 0% to 100% of the shoot length. To identify chromosomal regions or loci responsible for resistance to FB of Malus × robusta 5, a set of microsatellite markers (simple sequence repeat, SSRs) was chosen covering all linkage groups of apple. Up to eight different microsatellites were bulked to one mutliplex PCR using four different labels and a fifth label for a size standard. Fifty-nine microsatellite markers out of 72 SSRs were polymorphic. Fifty-four of 66 loci detected could be mapped and were useful for the detection of related resistant loci. Alleles of microsatellites Hi03d06, CH03g07 and CH03e03 originating from the resistant donor M. robusta were associated with resistance to Erwinia amylovora. Up to eighty percent of the phenotypic variation could be explained by the interval spanned by SSRs CH03g07 and CH03e03, indicating the presence of a major resistance gene. All three microsatellites are located on the distal part of linkage group 3, spanning 15 cM. The SSR marker CH03e03 can be regarded as diagnostic marker for FB resistance. Only seven progeny expressing allele b (184 bp) of CH03e03 showed blighted shoot lengths of more than 30% and only nine progeny lacking allele b showed blighted shoot lengths of <30%. By setting a threshold of 30% shoot necrosis for resistance to FB, the 146 individuals segregate into 71 susceptible and 75 resistant plants, and resistance to FB maps 9 cM away from marker CH03e03. [source] Post-infection development and histopathology of Meloidogyne arenaria race 1 on Arachis spp.PLANT PATHOLOGY, Issue 5 2008K. Proite The reproductive behaviour of the root-knot nematode Meloidogyne arenaria race 1 was compared on two wild species of Arachis (A. duranensis and A. stenosperma) and cultivated peanut (A. hypogaea cv. IAC-Tatu-ST). The three species were considered moderately susceptible, resistant, and susceptible, respectively. Penetration and development of the root-knot nematode in the resistant species was reduced in comparison with that occurring in susceptible plants. Several cell features, including dark blue cytoplasm and altered organelle structure were observed in the central cylinder of A. stenosperma, indicating a hypersensitive-like response (HR) of infested host cells. Neither giant cells, nor nematodes developed beyond the second stage, were found on A. stenosperma. Arachis duranensis showed a delay in the development of nematodes in the roots compared to A. hypogaea. The two wild peanut species were chosen to be the contrasting parents of a segregating population for mapping and further investigation of resistance genes. [source] Genetic diversity contribution to errors in short oligonucleotide microarray analysisPLANT BIOTECHNOLOGY JOURNAL, Issue 5 2006Matias Kirst Summary DNA arrays based on short oligonucleotide (, 25-mer) probes are being developed for many species, and are being applied to quantify transcript abundance variation in species with high genetic diversity. To define the parameters necessary to design short oligo arrays for maize (Zea mays L.), a species with particularly high nucleotide (single nucleotide polymorphism, SNP) and insertion-deletion (indel) polymorphism frequencies, we analysed gene expression estimates generated for four maize inbred lines using a custom Affymetrix DNA array, and identified biases associated with high levels of polymorphism between lines. Statistically significant interactions between probes and maize inbreds were detected, affecting five or more probes (out of 30 probes per transcript) in the majority of cases. SNPs and indels were identified by re-sequencing; they are the primary source of probe-by-line interactions, affecting probeset level estimates and reducing the power of detecting transcript level variation between maize inbreds. This analysis identified 36 196 probes in 5118 probesets containing markers that may be used for genotyping in natural and segregating populations for association gene analysis and genetic mapping. [source] Association mapping of straighthead disorder induced by arsenic in Oryza sativaPLANT BREEDING, Issue 6 2009H. A. Agrama Abstract Straighthead is a physiological disorder in rice (Oryza sativa L.) resulting in sterile florets, poorly developed panicles and yield loss. Because of its sporadic nature and unidentified causes for the disorder, molecular marker assisted selection is essential for resistance improvement in breeding programmes. To take advantage of recent advances in gene-mapping technology, we executed a genome-wide association mapping to identify genetic regions associated with straighthead disorder using 547 accessions of germplasm from the USDA rice core collection. Straighthead was evaluated in arsenic treated soil and genotyping was conducted with 75 molecular markers covering the entire rice genome about every 25 cM. A mixed-linear model approach combining the principal component assignments with kinship estimates proved to be particularly promising for association mapping. The extent of linkage disequilibrium was described among the markers. Six markers were found to be significantly associated with straighthead, explaining 35% of the total phenotypic variation. However, only two SSR markers, RM413 and RM277 on chromosome 5 and 12, respectively, have a significant association with low rating indicating straighthead resistance. Confirmation of the marker-straighthead association using segregating populations is necessary before marker-assisted selection can be applied. [source] Molecular mapping of genic male-sterile genes ms15, ms5 and ms6 in tetraploid cottonPLANT BREEDING, Issue 2 2009D. Chen Abstract Two genic male sterile (GMS) lines, Lang-A conditioned by ms15 and Zhongkang-A conditioned by ms5ms6 duplicate recessive genes in Gossypium hirsutum L., were chosen to map GMS genes. These two lines were crossed with Gossypium barbadense cv. ,Hai7124' to produce segregating populations. The ms15 gene was mapped on chromosome 12, and was flanked by two simple sequence repeat (SSR) markers, NAU2176 and NAU1278, with a genetic distance of 0.8 and 1.9 cM respectively. The ms5 and ms6 genes were mapped to one pair of homoeologous chromosomes, ms5 on chromosome 12 flanked by three SSR markers, NAU3561, NAU2176 and NAU2096, with genetic distances of 1.4, 1.8 and 1.8 cM, respectively, and ms6 on chromosome 26 flanked by two SSR markers, BNL1227 and NAU460, with a genetic distance of 1.4 and 1.7 cM respectively. These tightly linked markers with the ms15, ms5 and ms6 genes can be used in the marker-assisted selection among segregating populations in a breeding programme, and provide the foundation for gene isolation by map-based cloning for these three genes. [source] Effect of the Rht-D1 dwarfing locus on Fusarium head blight rating in three segregating populations of winter wheatPLANT BREEDING, Issue 4 2008H.-H. Voss Abstract Fusarium head blight (FHB) is one of the major fungal diseases in wheat throughout the world. To control FHB severity, breeding genetically resistant varieties is thought to be the most promising strategy. In wheat breeding programmes, short cultivars predominantly carrying the Norin 10 derived semi-dwarfing allele Rht-D1b (Rht2) are preferred worldwide because of higher achievable grain yields and lower risk of lodging. This study was conducted to determine the influence of different alleles at the Rht-D1 locus on FHB reaction. Three winter wheat populations were produced by crossing rather susceptible varieties ,Biscay', ,Pirat' and ,Rubens' carrying mutant-type allele Rht-D1b with the more resistant varieties ,Apache', ,Romanus' and ,History' containing the Rht-D1a wild-type allele (rht2). The 190, 216 and 103 progeny of the F4 -derived populations were assayed for the presence of Rht-D1a or Rht-D1b, plant height, and mean FHB rating after spray inoculation at flowering time with a highly aggressive isolate of Fusarium culmorum. Comparably, high mean FHB severities ranging from 28% to 49% for all population × environment combinations were achieved, with significant genotypic variation for FHB rating and plant height within all populations. Both traits were negatively correlated with r ranging from ,0.48 to ,0.61 in the complete populations. However, within the subpopulations homozygous for one or other height allele these correlations decreased considerably. The Rht-D1b semi-dwarfing allele resulted in 7,18% shorter plants, depending on the population, but a considerably increased FHB reaction of 22,53%. Nevertheless, significant genotypic variance for FHB resistance remained in all tested Rht-D1b subpopulations indicating that selection for moderately FHB resistant genotypes within agronomically beneficial Rht-D1b genotypes is still feasible. [source] Development of SCAR markers for identification of stem rust resistance gene Sr31 in the homozygous or heterozygous condition in bread wheatPLANT BREEDING, Issue 6 2006B. K. Das Abstract The stem rust resistance gene Sr31, transferred from rye (Secale cereale) into wheat (Triticum aestivum L.) imparts resistance to all the virulent pathotypes of stem rust (Puccinia graminis f. sp. tritici) found in India. Wheat genotypes including carriers and non-carriers of the Sr31 gene were analysed using arbitrary primed polymerase chain reaction (AP-PCR). AP-PCR markers viz. SS30.2580(H) associated with the Sr31 gene and SS26.11100 associated with the allele for susceptibility were identified. Linkage between the markers and phenotypes was confirmed by analysing an F2 population obtained from a cross between a resistant and a susceptible genotype. The markers were tightly linked to the respective alleles. Both the AP-PCR markers were converted into sequence characterized amplified region (SCAR) markers, viz. SCSS30.2576 and SCSS26.11100 respectively. The markers were validated in two more segregating populations and 49 wheat genotypes. Using both markers it was possible to distinguish the homozygous from the heterozygous carriers of the Sr31 gene in the F2 generation. The markers developed in this study can be used for pyramiding of the Sr31 gene with other rust resistance genes and in marker-assisted selection. [source] Microsatellite marker for yellow rust resistance gene Yr5 in wheat introgressed from spelt wheatPLANT BREEDING, Issue 6 2002Q. Sun Abstract Yellow rust of wheat caused by Puccinia striiformis f sp. tritici has been periodically epidemic and severely damaged wheat production in China and throughout the world. Breeding for resistant cultivars has been proved to be an effective way to resolve the problem. A yellow rust resistance gene, Yr5, derived from Triticum spelta shows immunity or high resistance to the most popular isolates Tiaozhong 30 and 31 in China. Establishment of DNA markers for the Yr5 gene will facilitate marker-assisted selection and gene pyramiding in the breeding programme. Since the Yr5 gene was cytologically located on the long arm of chromosome 2B, By33, the donor of Yr5, was crossed and backcrossed with the susceptible line 441, and BC3F2 and BC3F3 segregating populations were screened for polymorphism by using 11 microsatellite primers mapped on chromosome 2B. A marker, Xgwm501-195 bp/160 bp, was found to be linked to Yr5, with a genetic distance of 10.5-13.3 cM. [source] Adapting wheat cultivars to resource conserving farming practices and human nutritional needsANNALS OF APPLIED BIOLOGY, Issue 4 2005R M TRETHOWAN Summary As farmers increasingly adopt resource conserving farming practices, there is a need for wheat cultivars that better adapt to the changing environment and the nutritional needs of people, particularly those living in developing countries. Improved adaptation to zero and minimum tillage, better water use efficiency, improved root health, durable resistance to foliar diseases and enhanced nutritional value of the grain are key selection criteria for plant breeders. Significant responses to selection for these constraints have been achieved at the International Maize and Wheat Improvement Center (CIMMYT), by selecting segregating populations and advanced lines in carefully managed tillage, moisture deficit and heat stressed environments, that correlate with key spring wheat growing environments globally. Root health has been improved through a combination of marker assisted selection and disease bioassays, and the nutritional value of wheat grain has been enhanced using genetic variation for high Fe and Zn grain content found among tetraploid wheat ancestral species. [source] | ||||||||||