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Root Segments (root + segment)

Distribution by Scientific Domains

Life Sciences	63%

Selected Abstracts

Residual bacteria in root apices removed by a diagonal root-end resection: a histopathological evaluation

INTERNATIONAL ENDODONTIC JOURNAL, Issue 6 2008
S. Lin
Abstract Aim, To assess bacteria in the apical portion of the root end after 45° root-end resection in teeth with persistent periapical lesions. Methodology, The study included 27 apical root segments from patients with persistent periapical lesions. Histological sections of the coronal part of the amputated root segment were stained with Brown and Brenn to detect the presence of bacteria in the main root canal and/or in irregular root spaces and dentinal tubules. The quality of each root canal filling was evaluated using preoperative radiographs of filling, length of root filling as assessed from the distance between its apical end and the radiographic apex, diameter of apical preparation, and presence of apical perforations or deviations from the root canal. Two endodontists, blinded to the bacteriological results, independently evaluated the radiographs. Results, Bacteria were present in 23 (85.2%) specimens: five in only the main canal (21.7%), 10 in only the dentinal tubules and irregular spaces (43.5%), and eight in both irregular spaces and dentinal tubules and in the main root canal (34.8%). No correlation was found between the technical quality of the root filling assessed radiographically and bacterial presence in the central canal or irregular areas. Conclusions, Infected irregular areas were found in the root tips of teeth with persistent periapical lesions. This was found regardless of the radiographic quality of the root filling. Diagonal, 45° root-end resection may expose such contaminated irregularities to the periapical tissue. [source]

Material stiffness, branching pattern and soil matric potential affect the pullout resistance of model root systems

EUROPEAN JOURNAL OF SOIL SCIENCE, Issue 6 2007
S. B. Mickovski
Summary Understanding of the detailed mechanisms of how roots anchor in and reinforce soil is complicated by the variability and complexity of both materials. This study controlled material stiffness and architecture of root analogues, by using rubber and wood, and also employed real willow root segments, to investigate the effect on pullout resistance in wet and air-dry sand. The architecture of model roots included either no laterals (tap-root) or a single pair at two different locations (herringbone and dichotomous). During pullout tests, data on load and displacement were recorded. These studies were combined with Particle Image Velocimetry (PIV) image analysis of the model root-soil system at a transparent interface during pullout to increase understanding of mechanical interactions along the root. Model rubber roots with small stiffness had increasing pullout resistance as the branching and the depth of the lateral roots increased. Similarly, with the stiff wooden root models, the models with lateral roots embedded deeper showed greatest resistance. PIV showed that rubber model roots mobilized their interface shear strength progressively whilst rigid roots mobilized it equally and more rapidly over the whole root length. Soil water suction increased the pullout resistance of the roots by increasing the effective stress and soil strength. Separate pullout tests conducted on willow root samples embedded in sand showed similar behaviour to the rigid model roots. These tests also demonstrated the effect of the root curvature and rough interface on the maximum pullout resistance. [source]

Fungal endophytes in potato roots studied by traditional isolation and cultivation-independent DNA-based methods

FEMS MICROBIOLOGY ECOLOGY, Issue 3 2006
Monika Götz
Abstract The composition and relative abundance of endophytic fungi in roots of field-grown transgenic T4-lysozyme producing potatoes and the parental line were assessed by classical isolation from root segments and cultivation-independent techniques to test the hypothesis that endophytic fungi are affected by T4-lysozyme. Fungi were isolated from the majority of root segments of both lines and at least 63 morphological groups were obtained with Verticillium dahliae, Cylindrocarpon destructans, Colletotrichum coccodes and Plectosporium tabacinum as the most frequently isolated species. Dominant bands in the fungal fingerprints obtained by denaturing gradient gel electrophoresis analysis of 18S rRNA gene fragments amplified from total community DNA corresponded to the electrophoretic mobility of the 18S rRNA gene fragments of the three most abundant fungal isolates, V. dahliae, C. destructans and Col. coccodes, but not to P. tabacinum. The assignment of the bands to these isolates was confirmed for V. dahliae and Col. coccodes by sequencing of clones. Verticillium dahliae was the most abundant endophytic fungus in the roots of healthy potato plants. Differences in the relative abundance of endophytic fungi colonizing the roots of T4-lysozyme producing potatoes and the parental line could be detected by both methods. [source]

Residual bacteria in root apices removed by a diagonal root-end resection: a histopathological evaluation

Octenidine in root canal and dentine disinfection ex vivo

INTERNATIONAL ENDODONTIC JOURNAL, Issue 11 2007
L. Tandjung
Abstract Aim, The aim of the present study was to investigate the antimicrobial activity of octenidine on Enterococcus faecalis ATCC 29212 in a dentine block model. Methodology, Fifty-six root segments of extracted human teeth were infected with E. faecalis for 4 weeks. Octenidine-phenoxyethanol gel (1 : 1) was applied for different timing: 1 min, 10 min, 7 days and in a different formula (1 : 3) for 10 min. Three samples were chosen for the group with placebo gel and for the group without infection (negative control). Dentine samples were collected, and the total count of bacteria and colony-forming units were determined. In addition, for controls and the 10 min group with 1 : 1 gel, the proportion of viable bacteria (PVB) was assessed. Results, Octenidine was particularly effective after incubation periods of 10 min and 7 days. The mean PVB decreased significantly from 57.2% to 5.7% after 10 min application. After 7 days, only one of 10 samples showed positive culture. Conclusion, The present study showed the effectiveness of octenidine against E. faecalis in dentine disinfection. Further laboratory and clinical studies are required. [source]

Membrane depolarization induces K+ efflux from subapical maize root segments

NEW PHYTOLOGIST, Issue 1 2002
Fabio F. Nocito
Summary ,,The role of potassium efflux from maize (Zea mays) root segments in maintaining transmembrane electric potential difference (Em) was studied in vivo, together with the involvement of outward rectifying K+ channels (ORCs). ,,Measurements were made of the efflux of potassium (K+) from roots when its uptake was competitively inhibited by rubidium (Rb+), of the Em of the root cells by microelectrodes and of the unidirectional fluxes of monovalent cations. ,,The influx of Rb+, caesium (Cs+) or ammonium (NH4+) into the segments induced an efflux of K+. Lithium (Li+) and sodium (Na+) were not taken up and did not induce K+ efflux. The permeating cations induced membrane depolarizations, which were closely related to the values of K+ efflux. Two K+ -channel blockers, tetraethylammonium-chloride and quinidine, inhibited K+ efflux. The inhibition was accompanied by a higher membrane depolarization induced by Rb+, whose influx was not affected. ,,The results suggest that a depolarizing event caused by cation uptake increased K+ efflux from the cells, probably through the activation of ORCs involved in restoration and stabilization of Em. [source]

Root traits associated with nutrient exploitation following defoliation in three coexisting perennial grasses in a semi-arid savanna

OIKOS, Issue 2 2001
C. A. Busso
Experiments were conducted to evaluate root traits associated with nutrient exploitation following defoliation in three coexisting perennial grasses in a semi-arid savanna. Root length density was determined within soil cores directly beneath plants, nitrogen uptake was evaluated by excised-root assay with (15NH4)2SO4, and mycorrhizal root colonization was estimated by observation of root segments. Root length density was lowest for Bouteloua curtipendula, intermediate for Eriochloa sericea, and highest for Aristida purpurea indicating that root length density was a more important trait for the mid-seral than the late-seral species. Rates of 15N uptake were greatest in the least grazing tolerant late-seral species, E. sericea, intermediate in the mid-seral species, A. purpurea, and lowest in the most grazing tolerant late-seral species, B. curtipendula. Two successive defoliations reduced 15N uptake 60% in the late-seral species with the greatest uptake rate (E. sericea), but not in species with lowest uptake rates (B. curtipendula). Root length colonization was consistently high (33,61%) in all three species suggesting that these C4 perennial grasses may function as obligate mycotrophs. Contrasting responses among the two late-seral species indicate that the least grazing tolerant species, E. sericea, appears best adapted for nutrient exploitation while the most grazing tolerant species, B. curtipendula, appears best adapted for efficient nutrient retention. Contrasting responses of nitrogen uptake to short-term defoliation parallel the population responses of these two coexisting late-seral species to long-term herbivory. These data indicate that herbivory may shift interspecific competitive interactions by mediating nutrient exploitation and that a trade-off may exist between nutrient exploitation and herbivory tolerance in these species. [source]

A new precipitation technique provides evidence for the permeability of Casparian bands to ions in young roots of corn (Zea mays L.) and rice (Oryza sativa L.)

PLANT CELL & ENVIRONMENT, Issue 11 2005
KOSALA RANATHUNGE
ABSTRACT Using an insoluble inorganic salt precipitation technique, the permeability of cell walls and especially of endodermal Casparian bands (CBs) for ions was tested in young roots of corn (Zea mays) and rice (Oryza sativa). The test was based on suction of either 100 µm CuSO4 or 200 µm K4[Fe(CN)6] into the root from its medium using a pump (excised roots) or transpirational stream (intact seedlings), and subsequent perfusion of xylem of those root segments with the opposite salt component, which resulted in precipitation of insoluble brown crystals of copper ferrocyanide. Under suction, Cu2+ could cross the endodermis apoplastically in both plant species (although at low rates) developing brown salt precipitates in cell walls of early metaxylem and in the region between CBs and functioning metaxylem vessels. Hence, at least Cu2+ did cross the endodermis dragged along with the water. The results suggested that CBs were not perfect barriers to apoplastic ion fluxes. In contrast, ferrocyanide ions failed to cross the mature endodermis of both corn and rice at detectable amounts. The concentration limit of apoplastic copper was 0.8 µm at a perfusion with 200 µm K4[Fe(CN)6]. Asymmetric development of precipitates suggested that the cation, Cu2+, moved faster than the anion, [Fe(CN)6]4,, through cell walls including CBs. Using Chara cell wall preparations (,ghosts') as a model system, it was observed that, different from Cu2+, ferrocyanide ions remained inside wall-tubes suggesting a substantially lower permeability of the latter which agreed with the finding of an asymmetric development of precipitates. In both corn and rice roots, there was a significant apoplastic flux of ions in regions where laterals penetrated the endodermis. Overall, the results show that the permeability of CBs to ions is not zero. CBs do not represent a perfect barrier for ions, as is usually thought. The permeability of CBs may vary depending on growth conditions which are known to affect the intensity of formation of bands. [source]

Arabidopsis ecotypes and mutants that are recalcitrant to Agrobacterium root transformation are susceptible to germ-line transformation

THE PLANT JOURNAL, Issue 1 2000
Kirankumar S. Mysore
Summary Germ-line transformation (vacuum infiltration) is frequently used to transform Arabidopsis thaliana using Agrobacterium tumefaciens. We have recently identified several Arabidopsis ecotypes and T-DNA-tagged mutants that are recalcitrant to Agrobacterium -mediated transformation of cut root segments. Some of these ecotypes and mutants are deficient in their ability to bind bacteria. Some are deficient in T-DNA integration. We report here that using a germ-line transformation protocol we transformed these ecotypes and mutants, including attachment- and integration-defective Arabidopsis plants, with a frequency similar to that of highly susceptible wild-type plants. However, we could not transform otherwise highly susceptible Arabidopsis plants by germ-line or root transformation using several vir and attachment-deficient Agrobacterium mutants. These results indicate that certain plant factors important for transformation may exist in germ-line tissue but may be lacking in some somatic cells. [source]

Use of real-time quantitative PCR to investigate root and gall colonisation by co-inoculated isolates of the nematophagous fungus Pochonia chlamydosporia

ANNALS OF APPLIED BIOLOGY, Issue 1 2009
S.D. Atkins
Abstract The fungus Pochonia chlamydosporia is a potential biological control agent for plant parasitic nematodes, but to date, there has been little investigation of interactions (competitive, antagonistic or synergistic) between different isolates that occur together on roots and nematode galls. Real-time quantitative PCR (qPCR) has greatly improved the study of many fungi in situ on plant and nematode hosts, but distinguishing closely related isolates remains difficult. In this study, primers to discriminate P. chlamydosporia var. chlamydosporia and P. chlamydosporia var. catenulata were used to measure the relative abundance of isolates of the two varieties when inoculated singly or together on tomato plants. Also, sequence-characterised amplified polymorphic regions were identified to distinguish two different isolates of P. chlamydosporia var. chlamydosporia. Individual 1-cm root segments and nematode galls were excised, DNA extracted and subjected to real-time qPCR with the discriminatory primers. The qPCR method proved sensitive and reproducible and demonstrated that roots and nematode galls were not uniformly colonised by the fungi. Results indicated that the P. chalmydosporia var. catenulata isolate was more abundant on roots and eggs than P. chlamydosporia var. chlamydosporia, but all the isolates infected a similar proportion of nematode eggs. There was an indication that the abundance of each fungal isolate was reduced in co-inoculation experiments compared with single inoculations, but the number of root segments and galls colonised was not statistically significantly different. [source]