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Red Algae (red + alga)
Selected AbstractsTHE , SUBUNITS OF PHYCOERYTHRIN FROM A RED ALGA: POSITION IN PHYCOBILISOMES AND SEQUENCE CHARACTERIZATIONJOURNAL OF PHYCOLOGY, Issue 1 2001Kirk E. Apt Aglaothamnion neglectum Feldman-Mazoyer has two , subunits, ,31 and ,33, that are associated with phycoerythrin in the light-harvesting phycobilisomes. We demonstrate that these subunits are spatially separated within the phycobilisome, with the ,31 subunit present at the distal end of phycobilisome rods and the ,33 subunit present on the proximal end. These subunits are thought to link phycoerythrin hexamers together in the rod substructure, serving a role analogous to that of linker polypeptides of cyanobacteria (although unlike the cyanobacterial linker polypeptides they are chromophorylated). The sequencing of tryptic polypeptides of the , subunits enabled us to prepare oligonucleotides encoding different regions of ,31. These oligonucleotides were used as primers to generate a probe for isolating a ,31 cDNA clone. Characterization of the cDNA clone predicts a polypeptide of 280 amino acids with a 42 amino acid presequence that is characteristic of a transit peptide, the peptide that targets proteins to chloroplasts of vascular plants. The ,31 subunit has 50% similarity to the previously characterized ,33 subunit but has no identifiable similarity to functionally related polypeptides present in cyanobacterial phycobilisomes or to any other polypeptides in the databases. A repeat of 95 amino acids is present in the red algal , subunit sequences, suggesting that these proteins were generated by a gene duplication followed by fusion of the duplicate sequences. [source] DEFINING THE MAJOR LINEAGES OF RED ALGAE (RHODOPHYTA),JOURNAL OF PHYCOLOGY, Issue 2 2006Hwan Su Yoon Previous phylogenetic studies of the Rhodophyta have provided a framework for understanding red algal phylogeny, but there still exists the need for a comprehensive analysis using a broad sampling of taxa and sufficient phylogenetic information to clearly define the major lineages. In this study, we determined 48 sequences of the PSI P700 chl a apoprotein A1 (psaA) and rbcL coding regions and established a robust red algal phylogeny to identify the major clades. The tree included most of the lineages of the Bangiophyceae (25 genera, 48 taxa). Seven well-supported lineages were identified with this analysis with the Cyanidiales having the earliest divergence and being distinct from the remaining taxa; i.e. the Porphyridiales 1,3, Bangiales, Florideophyceae, and Compsopogonales. We also analyzed data sets with fewer taxa but using seven proteins or the DNA sequence from nine genes to resolve inter-clade relationships. Based on all of these analyses, we propose that the Rhodophyta contains two new subphyla, the Cyanidiophytina with a single class, the Cyanidiophyceae, and the Rhodophytina with six classes, the Bangiophyceae, Compsopogonophyceae, Florideophyceae, Porphyridiophyceae classis nov. (which contains Porphyridium, Flintiella, and Erythrolobus), Rhodellophyceae, and Stylonematophyceae classis nov. (which contains Stylonema, Bangiopsis, Chroodactylon, Chroothece, Purpureofilum, Rhodosorus, Rhodospora, and Rufusia). We also describe a new order, Rhodellales, and a new family, Rhodellaceae (with Rhodella, Dixoniella, and Glaucosphaera). [source] COMMON EVOLUTIONARY ORIGIN OF STARCH BIOSYNTHETIC ENZYMES IN GREEN AND RED ALGAE,JOURNAL OF PHYCOLOGY, Issue 6 2005Nicola J. Patron Plastidic starch synthesis in green algae and plants occurs via ADP-glucose in likeness to prokaryotes from which plastids have evolved. In contrast, floridean starch synthesis in red algae proceeds via uridine diphosphate-glucose in semblance to eukaryotic glycogen synthesis and occurs in the cytosol rather than the plastid. Given the monophyletic origin of all plastids, we investigated the origin of the enzymes of the plastid and cytosolic starch synthetic pathways to determine whether their location reflects their origin,either from the cyanobacterial endosymbiont or from the eukaryotic host. We report that, despite the compartmentalization of starch synthesis differing in green and red lineages, all but one of the enzymes of the synthetic pathways shares a common origin. Overall, the pathway of starch synthesis in both lineages represents a chimera of the host and endosymbiont glycogen synthesis pathways. Moreover, host-derived proteins function in the plastid in green algae, whereas endosymbiont-derived proteins function in the cytosol in red algae. This complexity demonstrates the impacts of integrating pathways of host with those of both primary and secondary endosymbionts during plastid evolution. [source] BIOGEOGRAPHY OF MARINE RED ALGAE: MYTHS AND REALITIESJOURNAL OF PHYCOLOGY, Issue 2001Article first published online: 24 SEP 200 Hommersand, M. H. Department of Biology, Coker Hall, University of North Carolina, Chapel Hill, NC 27599-3280 USA Theories about the geographical distribution of marine algae fall roughly into two categories: (1) a concept of biogeographical regions in which algal distribution is determined primarily by growth, reproductive and lethal temperature boundaries (Setchell, van den Hoek, Breeman, Lüning) and (2) an historical perspective in which distribution is determined primarily by patterns of dispersal and the establishment of barriers to dispersal (vicariance biogeography) (Svedelius, Garbary, Lindstrom, Hommersand). Setchell proposed the 5° isotherm rule in 1920, and in 1924 Svedelius advocated a worldwide distribution for tropical and subtropical groups followed by discontinuous distribution upon closure of the connection between the Indian Ocean and Mediterranean Sea and, later, between North and South America (Wegener's theory). Transarctic dispersal routes have received special attention in recent years (Lindstrom, Lüning, van Oppen, Olsen, Stam), as have special relationships between Australasia, South Africa and South America (Hommersand). Less well understood are the climatic changes that have taken place in the Cenozoic which are strategic to an understanding vicariant biogeography. The advent of molecular methods combined with the tools of phylogenetic systematics now make it possible to identify ancestral taxa, test the consistency of tree topologies, and calculate mean branch lengths between sister lineages diverging from an interior node of a tree. With such methods it may be possible to infer ancestral areas, identify dispersal pathways, determine the chronology of isolating events, assess the impact of multiple invasions, and generally relate dispersal and vicariance models to phylogenetic hypotheses for red, brown and green algal taxa. [source] CELL WALL BIOLOGY IN RED ALGAE: DIVIDE AND CONQUERJOURNAL OF PHYCOLOGY, Issue 5 2000Valerie Vreeland First page of article [source] 145 Preliminary Results of Cytoskeletal Components in Various Red Algae Using Confocal Laser Scanning MicroscopyJOURNAL OF PHYCOLOGY, Issue 2003W. E. Schmidt Data concerning the cytoskeletal components of red algae are scant. The goal of this ongoing comparative survey is to develop a more complete characterization of the red algal cytoskeleton, and subsequent elucidation of its function, using representative taxa belonging to major evolutionary lineages within the Rhodophyta. Preliminary data were obtained using enzyme digestion of cell walls and detergent rinses with direct (phalloidin) and indirect (monoclonal antibodies) labeling methods for microfilaments and tubulin, respectively. Samples were viewed using confocal laser scanning microscopy. Results will be discussed in light of the more thoroughly understood cytoskeletal system reported for green algae. [source] Evolution of Protein Targeting into "Complex" Plastids: The "Secretory Transport Hypothesis"PLANT BIOLOGY, Issue 4 2003O. Kilian Abstract: In algae different types of plastids are known, which vary in pigment content and ultrastructure, providing an opportunity to study their evolutionary origin. One interesting feature is the number of envelope membranes surrounding the plastids. Red algae, green algae and glaucophytes have plastids with two membranes. They are thought to originate from a primary endocytobiosis event, a process in which a prokaryotic cyanobacterium was engulfed by a eukaryotic host cell and transformed into a plastid. Several other algal groups, like euglenophytes and heterokont algae (diatoms, brown algae, etc.), have plastids with three or four surrounding membranes, respectively, probably reflecting the evolution of these organisms by so-called secondary endocytobiosis, which is the uptake of a eukaryotic alga by a eukaryotic host cell. A prerequisite for the successful establishment of primary or secondary endocytobiosis must be the development of suitable protein targeting machineries to allow the transport of nucleus-encoded plastid proteins across the various plastid envelope membranes. Here, we discuss the possible evolution of such protein transport systems. We propose that the secretory system of the respective host cell might have been the essential tool to establish protein transport into primary as well as into secondary plastids. [source] PURIFICATION AND CHARACTERIZATION OF ,-CARRAGEENASE FROM MARINE BACTERIUM MUTANT STRAIN PSEUDOALTEROMONAS SP.JOURNAL OF FOOD BIOCHEMISTRY, Issue 3 2010AJ5-13 AND ITS DEGRADED PRODUCTS ABSTRACT A ,-carrageenan-degrading bacterial strain AJ5 isolated from the intestine of Apostichopus japonicus was identified as Pseudoalteromonas sp. based on the phenotypic characters and 16S rRNA gene sequencing. The mutant Pseudoalteromonas sp. AJ5-13 with ,-carrageenase activity of 61 U/mg protein was obtained from Pseudoalteromonas sp. AJ5 using mutagenesis technique. An extracellular ,-carrageenase was purified from Pseudoalteromonas sp. AJ5-13 cultural supernatant by ammonium sulfate fractionation, gel filtration chromatography (Sephadex G-200) and cation-exchange chromatography (CM-cellulose 52). The purified enzyme yielded a single band on SDS-PAGE with the molecular mass of 35 kDa. Data of the N-terminal amino acid sequence indicated that this protein might be a novel ,-carrageenase. The pI and Km of the enzyme were 8.5 and 9.8 ħ 0.2 mg/mL, respectively. The enzyme exhibited maximal activity at pH 8.0 and 55C. It hydrolyzed the ,-1, 4-glycosidic linkages of ,-carrageenan yielding ,-neocarrabiose, -tetraose, -hexaose, -octaose and -decaose sulfates as the main end-products. PRACTICAL APPLICATIONS ,-Carrageenases degrade ,-carrageenan by hydrolyzing the ,-1,4 linkages to a series of oligosaccharides. Thus, it is expected that like other ,-carrageenases, the ,-carrageenase isolated from Pseudoalteromonas sp. AJ5-13 would also be useful in seaweed biotechnology, pharmacy and immunology. ,-Carrageenases can be applied to study the composition and structure of carrageenans from different red alga, and to study the bacterial ,-carrageenan metabolism. They also provide the opportunity to investigate the structure-function relationship of the hydrolases that degrade self-associating sulfated polysaccharides. Examples of the practical applications of ,-carrageenases include their use in degrading the cell walls of seaweeds to obtain protoplasts, and in hydrolyzing ,-carrageenan to produce oligosaccharides. ,-Carrageenan-oligosaccharides have various potential biological properties, such as antiviral, antitumor, antioxidant activities, cytoprotection, immunomodulation, etc. [source] IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA,JOURNAL OF PHYCOLOGY, Issue 3 2007Anton Montsant Diatoms are unicellular brown algae that likely arose from the endocytobiosis of a red alga into a single-celled heterotroph and that constitute an algal class of major importance in phytoplankton communities around the globe. The first whole-genome sequence from a diatom species, Thalassiosira pseudonana Hasle et Heimdal, was recently reported, and features that are central to diatom physiology and ecology, such as silicon and nitrogen metabolism, iron uptake, and carbon concentration mechanisms, were described. Following this initial study, the basic cellular systems controlling cell signaling, gene expression, cytoskeletal structures, and response to stress have been cataloged in an attempt to obtain a global view of the molecular foundations that sustain such an ecologically successful group of organisms. Comparative analysis with several microbial, plant, and metazoan complete genome sequences allowed the identification of putative membrane receptors, signaling proteins, and other components of central interest to diatom ecophysiology and evolution. Thalassiosira pseudonana likely perceives light through a novel phytochrome and several cryptochrome photoreceptors; it may lack the conserved RHO small-GTPase subfamily of cell-polarity regulators, despite undergoing polarized cell-wall synthesis; and it possesses an unusually large number of heat-shock transcription factors, which may indicate the central importance of transcriptional responses to environmental stress. The availability of the complete gene repertoire will permit a detailed biochemical and genetic analysis of how diatoms prosper in aquatic environments and will contribute to the understanding of eukaryotic evolution. [source] Reduction of lipid peroxidation and H2O2 -mediated DNA damage by a red alga (Grateloupia filicina) methanolic extractJOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 14 2005Yasantha Athukorala Abstract The antioxidant activity of an extract of Grateloupia filicina was evaluated using linoleic acid and fish oil as substrates in an induct period at 65 °C. Furthermore, the algal extract was subjected to comet assay to evaluate its protecting ability for H2O2 -induced DNA damage in rat lymphocytes. Progression of oxidation was examined using weight gain, peroxide value (PV), 2-thiobarbituric acid reactive substances and conjugated diene data. Effectiveness of the extract at 0.03 and 0.05% levels was superior to that of ,-tocopherol at 0.01% and the activity of 0.05% extract was higher than that of butylated hydroxyanisole and butylated hydroxytoluene at 0.01%. Also, the algal extract significantly inhibited H2O2 induced DNA damage in comet assay. The maximum DNA damage inhibition (68.9%) was recorded from the 50 µg ml,1 alga extract when the rat lymphocyte cells were treated with 50 µM H2O2. Copyright İ 2005 Society of Chemical Industry [source] Sebdenia cerebriformis sp. nov. (Sebdeniaceae, Sebdeniales) from the south and western Pacific OceanPHYCOLOGICAL RESEARCH, Issue 1 2008Antoine D.R. N'Yeurt SUMMARY A new species of red alga, Sebdenia cerebriformis N'Yeurt et Payri sp. nov. (Sebdeniaceae, Sebdeniales), is described from various localities in the south and western Pacific including Fiji, New Caledonia, the Solomon Islands, Vanuatu, and Indonesia (Java Sea). The new species is characterized by a ruffled thallus with multiple perennial stipitate holdfasts, large conspicuous inner cortical stellate cells, and a lax filamentous medulla. [source] Large subunit rDNA and rbcL gene sequence data place Petrohua bernabei gen. et sp. nov. in the Batrachospermales (Rhodophyta), but do not provide further resolution among taxa in this orderPHYCOLOGICAL RESEARCH, Issue 2 2007Morgan L. Vis SUMMARY The phylogenetic relationship among 12 previously described batrachospermalean taxa and a novel member of the order were investigated using the LSU and rbcL genes separately and in combination. The primary goal of this research was to establish the phylogenetic placement of a previously undescribed freshwater red alga from Chile. The results showed that the new entity with pseudoparenchymatous tube morphology is a member of the Batrachospermales and Petrohua bernabei gen. et sp. nov. is described herein. This is the first record to our knowledge of a Lemanea -like alga from Chile. It would appear that this thallus construction has evolved at least three times in the Batrachospermales and that the switch from a Batrachospermum -like construction to a pseudoparenchymatous construction may be a repeated adaptive response to turbulent waterfall habitats. In addition to providing information about a new freshwater red alga, this study sought to determine whether combining the data from two genes would produce a more robust phylogeny, particularly for intermediate nodes, to resolve familial relationships within the order. As with previous analyses, the Batrachospermales was resolved as a clade and support was high for relationships resolved among relatively recent nodes. Unfortunately, combining the LSU and rbcL data did not have the desired effect of more fully resolving intermediate nodes among the Batrachospermales. [source] New red alga, Acanthopeltis longiramulosa sp. nov. (Gelidiales, Rhodophyta) from Jeju Island, KoreaPHYCOLOGICAL RESEARCH, Issue 4 2003Yongpil Lee SUMMARY A new red alga from Jeju Island, Korea is described. The alga is assigned to Acanthopeltis, Gelidiaceae by the characteristics of terete erect axes, sympodial growth, and suborbicular branchlets that are amplexi-caul at the base. Acanthopeltis longiramulosaY. Lee et Kim is characterized by a discoid holdfast with a few stolons, rhizoids arising from the apex of the branchlet, an erect terete axis diverging into a few branches, longish obpyriform to lanceolate branchlets with smooth surfaces, and tetrasporangial stichidia or sper-matangial and cystocarps appendages on the marginal region of the branchlet. A. longiramulosa is more closely related to Acanthopeltis japonica than Acanthopeltis hirsuta in terms of thallus morphology. However, A. longiramulosa is easily distinguished from A. japonica, which has suborbicular branchlets with setaceous processes on both surfaces. [source] Isolation, characterization and expression of a cDNA encoding an elongation factor-1, from Porphyra yezoensis (Bangiales, Rhodophyta)PHYCOLOGICAL RESEARCH, Issue 1 2002Satoru Fukuda SUMMARY We report the isolation, characterization and expression of a cDNA encoding a polypeptide elongation factor-1, (EF-1,) from the marine red alga, Porphyra yezoensis. A cDNA clone was isolated from a leafy gametophyte cDNA library and the sequence was analyzed. The clone contained an open reading frame for a protein of 449 amino acids which exhibits sequence similarity to the known EF-1,. Comparison of the deduced amino acid sequence showed higher similarity to the Porphyra pur-purea EF-1,tef-c (97%) than to the P. purpurea EF-1,tef-s (61%). The mRNA was detected both in the leafy gametophyte and the filamentous sporophyte. [source] Research note: Characterization of a cDNA encoding glutamine synthetase II from Gelidium crinale (Rhodophyta)PHYCOLOGICAL RESEARCH, Issue 1 2002D. Wilson Freshwater SUMMARY A cDNA encoding glutamine synthetase (GS) was characterized from the red alga, Gelidium crinale (Turner) Gaillon, using reverse-transcriptase polymerase chain reaction and the 5,- and 3,-rapid amplification of cDNA ends. Sequence analysis of a 1231-bp GS cDNA transcript included both 5, and 3, untranslated regions and a 1056-bp open reading frame encoding a 352 amino acid polypeptide. Comparison with GS sequences from other organisms revealed that the G. crinale cDNA encodes a type-II GS, and the absence of a N-terminal plastid signal sequence suggests that it is a cytosolic isoenzyme. Phylogenetic analyses of GSII amino acid sequences supports the multiple origin of cytosolic and plastid isoenzymes during eukaryotic evolution. [source] The SSU rDNA Coding Region of a Filose Amoeba Contains a Group I Intron Lacking the Universally Conserved G at the 3,-Terminus,THE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 6 2000DEBASHISH BHATTACHARYA ABSTRACT. We sequenced small subunit ribosomal DNA (rDNA) PCR-fragments of sizes 2.3 kb and 2.9 kb isolated from a culture of the red alga, Porphyru spiralis var. spiralis. Phylogenetic analysis of the 2.3-kb fragment showed that it encoded the sequence of a contaminant filose amoeba. The Nuclearia -like amoeba (named strain N-Por) was identified with scanning electron microscopy. Its rDNA sequence was positioned with strong bootstrap support within a diverse protist assemblage that includes filose amoebae, chlor-arachniophytes, cercomonads, and Plasmodiophora brussicae. The rDNA of N-Por contained a group I intron at the conserved 943 position that remarkably, had a U at the 3,-terminus rather than the universally conserved G. [source] Spatially explicit trophic modelling of a harvested benthic ecosystem in Tongoy Bay (central northern Chile)AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 6 2002Marco Ortiz Abstract 1.A dynamical and spatial simulation model of a harvested benthic ecosystem of central northern Chile (Tongoy Bay) was constructed using the ECOSPACE software package. 2.In this system the red alga (Chondrocanthus chamissoi), the scallop (Argopecten pupuratus), the gastropod (Xanthochorus cassidiformis) and the crab (Cancer polyodon) are harvested intensively. The impacts of harvesting these resources exclusively in the seagrass, sand-gravel, and in the sand habitats, as well as, in the seagrass and sand-gravel and in all habitats were assessed. The goal was to explore policies of sustainable exploitation of the benthic systems. 3.The most important findings were: (a) Fishing exclusively in either the seagrass or sand habitats produces a population increase in the sea star Luidia magallanica, in the seagrass Heterozostera tasmanica, and in the crab Paraxanthus barbiger. (b) Exclusive fishing in the sand-gravel habitat causes only small effects on the species and groups, which suggests that this habitat is the most resistant to harvest. (c) The simultaneous fishing on two or three habitats would produce the largest negative effect on the entire system. Therefore, a habitat rotation fishery is recommended. 4.Our study suggests that trophic-spatially explicit models offer great possibilities for the screening and planning of effective interventions or manipulations of natural systems. Copyright İ 2002 John Wiley & Sons, Ltd. [source] Luminescent Solar Concentrators Employing PhycobilisomesADVANCED MATERIALS, Issue 31 2009Carlijn L. Mulder Phycobilisome-based luminescent solar concentrators (LSCs) take advantage of the photosynthetic antenna complexes of red algae and cyanobacteria. The phycobilisomes are successfully stabilized in a solid-state LSC matrix with minimal loss of performance. Comparison of samples with intact and decoupled complexes indicates that energy transfer within intact phycobilisomes results in a reduction of re-absorption losses by ,50%. [source] THE RESERVOIR POTENTIAL OF MIOCENE CARBONATE ROCKS IN THE ASKALE AND HINIS-MUS-VAN SUB-BASINS, EAST ANATOLIA, TURKEYJOURNAL OF PETROLEUM GEOLOGY, Issue 2 2003A. G. Büyükutku Lower-middle Miocene limestones in East Anatolia (eastern Turkey) assigned to the Adilcevaz Formation were studied using core and cuttings data from eight wells in the Tertiary Askale and Hinis-Mus-Van sub-basins. Their depositional environment, diagenetic characteristics and reservoir quality are reviewed. The Adilcevaz Formation carbonates are up to 225m thick. Abundant bioclasts are dominated by corals, encrusting red algae, bryozoans, and benthonic and planktonic foraminifera. Reef-core, fore-reef and back-reef facies were recognized. The preservation of primary porosity is generally poor as a result of late calcite cementation. Porosity is mainly present as moulds, vugs and interparticle types, which are best developed in the fore-reef and reef-core facies. However these pores are poorly connected and permeability is generally less than 0.1 mD. In contrast to coeval limestones of similiar facies in Iran, Iraq and other parts of the Middle East, the Adilcevaz Formation has little reservoir potential. [source] BIODIVERSITY OF CORALLINE ALGAE IN THE NORTHEASTERN ATLANTIC INCLUDING CORALLINA CAESPITOSA SP.JOURNAL OF PHYCOLOGY, Issue 1 2009NOV. (CORALLINOIDEAE, RHODOPHYTA) The Corallinoideae (Corallinaceae) is represented in the northeastern Atlantic by Corallina officinalis L.; Corallina elongata J. Ellis et Sol.; Haliptilon squamatum (L.) H. W. Johans., L. M. Irvine et A. M. Webster; and Jania rubens (L.) J. V. Lamour. The delimitation of these geniculate coralline red algae is based primarily on morphological characters. Molecular analysis based on cox1 and 18S rRNA gene phylogenies supported the division of the Corallinoideae into the tribes Janieae and Corallineae. Within the Janieae, a sequence difference of 46,48 bp (8.6%,8.9%) between specimens of H. squamatum and J. rubens in the cox1 phylogeny leads us to conclude that they are congeneric. J. rubens var. rubens and J. rubens var. corniculata (L.) Yendo clustered together in both phylogenies, suggesting that for those genes, there was no genetic basis for the morphological variation. Within the Corallineae, it appears that in some regions, the name C. elongata has been misapplied. C. officinalis samples formed two clusters that differed by 45,54 bp (8.4%,10.0%), indicating species-level divergence, and morphological differences were sufficient to define two species. One of these clusters was consistent with the morphology of the type specimen of C. officinalis (LINN 1293.9). The other species cluster is therefore described here as Corallina caespitosa sp. nov. This study has demonstrated that there is a clear need for a revision of the genus Corallina to determine the extent of "pseudocryptic" diversity in this group of red algae. [source] PHOTOINHIBITION IN RED ALGAL SPECIES WITH DIFFERENT CAROTENOID PROFILES,JOURNAL OF PHYCOLOGY, Issue 6 2008Nadine Schubert Members of the Rhodophyta present different carotenoid profiles. In a majority of the species, lutein constitutes >50% of the total carotenoid content, while in other species, it is replaced by zeaxanthin or antheraxanthin. Given that carotenoids have specific roles in photoprotection, different carotenoid profiles of red algae species could be related to their capacity to cope with photoinhibitory stress. Therefore, in the present work, the sensitivity to light stress of red algal species with different carotenoid profiles was investigated. Photoinhibition of photosynthesis induced by high-light stress and the subsequent recovery in dim-light conditions was measured using maximal PSII quantum efficiency (Fv/Fm). The degree of decrease and recovery of Fv/Fm and their respective kinetics were related to the carotenoid profile of the species. Although no relationship between sensitivity to high-light stress and the carotenoid profile was observed, there were clear carotenoid profile-related differences in the decrease and recovery kinetics. In species with zeaxanthin or antheraxanthin as the major carotenoid, Fv/Fm reduction and recovery was principally associated with slowly activated and relaxed processes. In contrast, in species with lutein as the major carotenoid, rapidly activated processes appear to play a major role in the down-regulation of photosynthesis during light-stress conditions. In these species, the repair of D1 is also important during light-stress conditions. This finding could imply differential expression of mechanisms involved in photoprotection in red algae that seems to be related to the carotenoid profile of the species. [source] UNIVERSAL PRIMERS AMPLIFY A 23S rDNA PLASTID MARKER IN EUKARYOTIC ALGAE AND CYANOBACTERIA,JOURNAL OF PHYCOLOGY, Issue 3 2007Alison R. Sherwood The challenge in the development of universal algal primers lies in the genetic diversity contained within the vast array of evolutionary lineages present in this informally named group of organisms. A comparative genomics approach was used previously to identify conserved primers flanking a region of the plastid genome. Our present research illustrates the feasibility of amplifying and sequencing this marker across multiple algal lineages. We present a preliminary framework of 107 novel sequences of this region from 62 red algae, 19 green algae, 14 brown algae, 8 cyanobacteria, 2 diatoms, 1 xanthophyte, and 1 euglenoid, and illustrate levels of divergence of the marker for well-represented groups in a neighbor-joining analysis. This ,410 nt region distinguishes most species included in the analysis. The remarkable universality of these primers suggests potential for their use in assays of environmental samples in which they could be used to simultaneously detect a number of different algal lineages. [source] COMMON EVOLUTIONARY ORIGIN OF STARCH BIOSYNTHETIC ENZYMES IN GREEN AND RED ALGAE,JOURNAL OF PHYCOLOGY, Issue 6 2005Nicola J. Patron Plastidic starch synthesis in green algae and plants occurs via ADP-glucose in likeness to prokaryotes from which plastids have evolved. In contrast, floridean starch synthesis in red algae proceeds via uridine diphosphate-glucose in semblance to eukaryotic glycogen synthesis and occurs in the cytosol rather than the plastid. Given the monophyletic origin of all plastids, we investigated the origin of the enzymes of the plastid and cytosolic starch synthetic pathways to determine whether their location reflects their origin,either from the cyanobacterial endosymbiont or from the eukaryotic host. We report that, despite the compartmentalization of starch synthesis differing in green and red lineages, all but one of the enzymes of the synthetic pathways shares a common origin. Overall, the pathway of starch synthesis in both lineages represents a chimera of the host and endosymbiont glycogen synthesis pathways. Moreover, host-derived proteins function in the plastid in green algae, whereas endosymbiont-derived proteins function in the cytosol in red algae. This complexity demonstrates the impacts of integrating pathways of host with those of both primary and secondary endosymbionts during plastid evolution. [source] EVIDENCE FOR LATERAL TRANSFER OF AN IE INTRON BETWEEN FUNGAL AND RED ALGAL SMALL SUBUNIT RRNA GENES,JOURNAL OF PHYCOLOGY, Issue 2 2005Kirsten M. Müller A previous study of the North American biogeography of the red algal genus Hildenbrandia noted the presence of group I introns in the nuclear small subunit (SSU) rRNA gene of the marine species H. rubra (Sommerf.) Menegh. Group IC1 introns have been previously reported at positions 516 and 1506 in the nuclear SSU RNA genes in the Bangiales and Hildenbrandiales. However, the presence of an unclassified intron at position 989 in a collection of H. rubra from British Columbia was noted. This intron is a member of the IE subclass and is the first report of this intron type in the red algae. Phylogenetic analyses of the intron sequences revealed a close relationship between this IE intron inserted at position 989 and similar fungal IE introns in positions 989 and 1199. The 989 IE introns formed a moderately to well-supported clade, whereas the 1199 IE introns are weakly supported. Unique structural helices in the P13 domain of the 989 and 1199 IE introns also point to a close relationship between these two clades and provide further evidence for the value of secondary structural characteristics in identifying homologous introns in evolutionarily divergent organisms. The absence of the 989 IE intron in all other red algal nuclear SSU rRNA genes suggests that it is unlikely that this intron was vertically inherited from the common ancestor of the red algal and fungal lineages but rather is the result of lateral transfer between fungal and red algal nuclear SSU rRNA genes. [source] EFFECT OF NUTRIENT DEPRIVATION AND RESUPPLY ON METABOLITES AND ENZYMES RELATED TO CARBON ALLOCATION IN GRACILARIA TENUISTIPITATA (RHODOPHYTA),JOURNAL OF PHYCOLOGY, Issue 2 2004Pi Nyvall Collén The starch content of red algae normally increases during nitrogen limitation. Based on this we hypothesized that nutrient deprivation would result in an increased activity of starch-synthesizing enzymes and a decrease in the activity of starch-degrading enzymes, with the opposite scenario when nutrients were sufficient. We therefore examined the effect of the nutrient status of Gracilaria tenuistipitata Chang et Xia on the content of starch and floridoside and on the activity of enzymes involved in the allocation of carbon into starch, floridoside, and agar; floridoside phosphate synthase and ,-galactosidase involved in synthesis and degradation of floridoside; starch synthase and starch phosphorylase involved in the metabolism of starch; uridine 5,-diphosphate (UDP)-glucose pyrophosphorylase; adenosine 5,-diphosphate-glucose pyrophosphorylase; UDP-glucose 4-epimerase; and phosphoglucomutase. During the period of nutrient limitation the starch and floridoside content increased, as did dry weight and C/N ratio, whereas growth rate and protein content decreased. A general decrease in the enzyme activities during nutrient limitation was also observed, indicating a decrease in overall cellular metabolism. The addition of nutrients caused an increase in enzyme activities and a decrease in the contents of starch and floridoside. Of the enzymes examined, only the activity of UDP-glucose pyrophosphorylase increased during nutrient limitation and decreased abruptly after nutrient addition. This implies a regulatory role for this enzyme in the supply of UDP-glucose for starch synthesis. It also supports our suggestion that UDP-glucose is the substrate for starch synthesis in red algae. This assertion is further strengthened by the observation that of the potential starch synthases only the UDP-glucose starch synthase could support the observed rate of starch synthesis. [source] CHOREONEMA (CORALLINALES, RHODOPHYTA): 18S rDNA PHYLOGENY AND RESURRECTION OF THE HAPALIDIACEAE FOR THE SUBFAMILIES CHOREONEMATOIDEAE, AUSTROLITHOIDEAE, AND MELOBESIOIDEAEJOURNAL OF PHYCOLOGY, Issue 5 2003Adele S. Harvey Phylogenetic analyses of 18S rDNA gene data for Choreonema thuretii (Corallinales, Rhodophyta) and available data for other coralline red algae indicated that Choreonema belongs to the same lineage as other taxa of Corallinales possessing tetra/bisporangial conceptacles with multiporate plates. These results, when integrated with extant morphological/anatomical data, ultrastructural data, and taxonomic data led to the conclusion that all taxa of Corallinales possessing multiporate conceptacles belong to a distinct family, the Hapalidiaceae. Recognition of the Hapalidiaceae as a distinct family was supported both phylogenetically and phenetically. The Hapalidiaceae includes those taxa of Corallinales whose tetrasporangia produce zonately arranged spores and whose tetra/bisporangia are borne in conceptacles, produce apical plugs, and develop beneath multiporate plates. The Hapalidiaceae includes the subfamilies Choreonematoideae, Melobesioideae, and Austrolithoideae, formerly placed in the Corallinaceae sensu lato. The Choreonematoideae lack cell connections between adjacent vegetative filaments and have a multiporate plate that is acellular at maturity, consisting only of a calcium carbonate matrix. The Austrolithoideae and Melobesioideae both have cellular pore plates; taxa of Melobesioideae have cell fusions between cells of adjacent vegetative filaments, whereas taxa of Austrolithoideae lack cellular connections between adjacent vegetative filaments. Inclusion of the Austrolithoideae in the Hapalidiaceae was based entirely on morphological/anatomical evidence; molecular evidence currently is lacking. Relevant historical and nomenclatural data are included. [source] 145 Preliminary Results of Cytoskeletal Components in Various Red Algae Using Confocal Laser Scanning MicroscopyJOURNAL OF PHYCOLOGY, Issue 2003W. E. Schmidt Data concerning the cytoskeletal components of red algae are scant. The goal of this ongoing comparative survey is to develop a more complete characterization of the red algal cytoskeleton, and subsequent elucidation of its function, using representative taxa belonging to major evolutionary lineages within the Rhodophyta. Preliminary data were obtained using enzyme digestion of cell walls and detergent rinses with direct (phalloidin) and indirect (monoclonal antibodies) labeling methods for microfilaments and tubulin, respectively. Samples were viewed using confocal laser scanning microscopy. Results will be discussed in light of the more thoroughly understood cytoskeletal system reported for green algae. [source] FLORIDOSIDE AS A CARBON PRECURSOR FOR THE SYNTHESIS OF CELL-WALL POLYSACCHARIDE IN THE RED MICROALGA PORPHYRIDIUM SP. (RHODOPHYTA),JOURNAL OF PHYCOLOGY, Issue 5 2002Shi-Yan Li Although red algae are known to be obligatory photoautotrophs, the red microalga Porphyridium sp. was shown to assimilate and metabolize floridoside. A pulse-chase experiment with [14C]floridoside showed that at the end of a 240-min pulse, 70% of total 14C-uptake by the cells remained in the floridoside fraction. To evaluate the assimilation of floridoside by Porphyridium sp. cells, we exposed Porphyridium sp. not only to [14C]floridoside but also to its constituents, [14C]glycerol and [14C]galactose, as compared with [14C]bicarbonate. The extent of incorporation of [14C] galactose by the Porphyridium sp. cells was insignificant (50,80 dpm·mL,1), whereas uptake of 14C from [14C]glycerol into the algal cells was evident (2.4 × 103 dpm·mL,1) after 60 min of the pulse. The pattern of 14C distribution among the major constituent sugars, xylose, glucose and galactose, of the labeled soluble polysaccharide was dependent on the 14C source. The relative content of [14C]galactose in the soluble polysaccharide was highest (28.8%) for [14C]floridoside-labeled culture and lowest (19.8%) for the [14C]glycerol-labeled culture. Upon incubation of [14C]floridoside with a crude extract of a cell-free system prepared from nonlabeled cells of Porphyridium sp., the label was indeed found to be incorporated into the sulfated polysaccharide. Our results suggested that the carbon metabolic pathway in Porphyridium sp. passes through the low molecular weight photoassimilatory product,floridoside,toward sulfated cell-wall polysaccharide production. [source] Use of Cell-Specific PAM-Fluorometry to Characterize Host Shading in the Epiphytic Dinoflagellate Gambierdiscus toxicusMARINE ECOLOGY, Issue 2 2002Tracy A. Villareal Abstract. Cell-specific fluorescence characteristics were used to characterize the light tolerance of the toxic benthic dinoflagellate Gambierdiscus toxicus. The fluorescence parameter Fv : Fm was measured using pulse amplitude modulation (PAM) fluorometry on individual cells collected from foliose red algae growing in the sub-tidal margin of South Water Cay, Belize. Samples were collected over several days during sunny and cloudy conditions and compared to samples incubated in situ. The data from individual cells were used to generate both Fv : Fm frequency histograms and averages. Maximum individual cell values of Fv : Fm reached 0.81 in pre-dawn samples, a value near the theoretical maximum for PAM fluorometry. In field samples from macroalgal hosts, average Fv : Fm values declined only slightly during the day, but cells incubated in bottles under 47 % incident sunlight showed a significant mid-day depression. In freshly collected samples, near-maximum Fv : Fm values could be found in individual cells during the entire day; however, the frequency histograms indicated a greater range in Fv : Fm values during the afternoon than in the morning. In contrast, cultures of G. toxicus showed a tight distribution around a mean. Field samples showed a rapid recovery to near-maximum Fv : Fm within 2 min when assayed using a standardized actinic light series. Similar results were obtained in laboratory cultures of G. toxicus grown at 73 µmol photons · m -2 · s -1, but not at 383 µmol photons · m -2 · s -1. These data provide empirical support for suggestions that G. toxicus exploits the three-dimensional structure of the algal host thallus to minimize light exposure. This strategy permits G. toxicus, a high-light intolerant species in culture, to thrive in shallow, well-lit tropical seas. It may also partially explain the observed preference of G. toxicus for complex, foliose macroalgae as hosts. [source] Habitat and Microhabitat of Mediterranean Clingfishes (Teleostei: Gobiesociformes: Gobiesocidae)MARINE ECOLOGY, Issue 1 2000Robert Hofrichter Abstract. This study addresses the habitat and microhabitat of the seven species of gobiesocid fish in the Mediterranean Sea. It is shown that Lepadogaster lepadogaster is closely adapted to large pebbles and boulder fields of rounded stones with a smooth surface. L. candollei is more euryecious and, in addition to inhabiting boulder fields also, occurs close to seagrass meadows, in small cavities and in association with sea urchins. Diplecogaster bimaculata is also euryecious and extends to greater depths. It lives on sand and muddy bottoms as well as on coralline grounds. At some locations this species is found in high abundance during the spawning season under empty bivalve shells or flat stones. Apletodon dentatus is the rarest species of Gobiesocidae in the Mediterranean Sea. It has a close association with seagrass or large brown algae (Cystoseira). Juveniles of A. incognitus are either associated with sea urchins or inhabit Posidonia meadows. Adults prefer the vicinity of seagrass meadows under empty bivalve shells and stones overgrown with red algae. Gouania wildenowi is stenoecious and is restricted to the interstices of roundish coarse gravel near the waterline. Opeatogenys gracilis is also stenoecious and lives only on the leaves of Posidonia and Cymodocea seagrass. The colourations of the different species and their variations are described and discussed. [source] | ||||||||||||||||||||||||||||