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Population Processes (population + process)
Selected AbstractsSpecies richness patterns and metapopulation processes , evidence from epiphyte communities in boreo-nemoral forestsECOGRAPHY, Issue 2 2006Swantje Löbel For several epiphyte species, dispersal limitation and metapopulation dynamics have been suggested. We studied the relative importance of local environmental conditions and spatial aggregation of species richness of facultative and obligate epiphytic bryophytes and lichens within two old-growth forests in eastern Sweden. The effect of the local environment was analyzed using generalized linear models (GLM). We tested whether species richness was spatially structured by fitting variogram models to the residuals of the GLM. In addition, we analyzed the species-area relationship (area=tree diameter). Different environmental variables explained the richness of different species groups (bryophytes vs lichens, specialists vs generalists, sexual vs asexual dispersal). In most groups, the total variation explained by environmental variables was higher than the variation explained by the spatial model. Spatial aggregation was more pronounced in asexually than in sexually dispersed species. Bryophyte species richness was only poorly predicted by area, and lichen species richness was not explained by area at all. Spatial aggregation may indicate effects of dispersal limitation and metapopulation dynamics on community species richness. Our results suggest that species groups differ in habitat requirements and dispersal abilities; there were indications that presence of species with different dispersal strategies is linked to the age of the host tree. Separate analyses of the species richness of species groups that differ in the degree of habitat specialization and dispersal ability give insights into the processes determining community species richness. The poor species-area relationship, especially in lichens, may indicate species turnover rather than accumulation during the lifetime of the host tree. Epiphyte species extinctions may be mainly caused by deterministic processes, e.g. changes in habitat conditions as the host tree grows, ages and dies, rather than by stochastic population processes. [source] The mid-season crash in aphid populations: why and how does it occur?ECOLOGICAL ENTOMOLOGY, Issue 4 2004A. J. Karley Abstract., 1. Aphid populations on agricultural crops in temperature regions collapse over a few days from peak numbers to local extinction soon after mid-summer (e.g. mid-July in the U.K.). The populations recover 6,8 weeks later. There is anecdotal or incidental evidence of an equivalent mid-season population crash of aphids on grasses and forbs in natural vegetation. 2. The ecological factors causing the mid-season population crash of aphids include a decline in plant nutritional quality and increased natural enemy pressure as the season progresses. Extreme weather events, e.g. severe rainstorms, can precipitate the crash but weather conditions are not a consistent contributory factor. 3. The population processes underlying the crash comprise enhanced emigration, especially by alate (winged) aphids, depressed performance resulting in reduced birth rates, and elevated mortality caused by natural enemies. 4. Mathematical models, previously applied to aphid populations on agricultural crops, have great potential for studies of aphid dynamics in natural vegetation. In particular, they can help identify the contribution of various ecological factors to the timing of the population crash and offer explanations for how slow changes in population processes can result in a rapid collapse of aphid populations. [source] Climate change and bet-hedging: interactions between increased soil temperatures and seed bank persistenceGLOBAL CHANGE BIOLOGY, Issue 10 2009MARK K. J. OOI Abstract In order to predict the long-term consequences of climate change, it is necessary to link future environmental changes to mechanisms that control plant population processes. This information can then be incorporated into strategies to more accurately model climate change impacts on species or to estimate future extinction risks. We examined the impact of increased temperatures on the longevity and dynamics of the persistent soil seed banks of eight ephemeral species from arid Australia. We found that the predicted global temperature increases under climate change will be reflected in increased soil temperatures, and that seeds in the soil seed bank will be exposed to long durations of high temperatures over the summer months. Three of the eight species studied had significantly greater levels of germination after exposure to predicted increased soil temperatures. Another species displayed a dramatic decrease in seed viability after such exposure. The capacity of such species to use the seed bank to bet hedge against rainfall events that cause germination but are insufficient to allow plant maturation, is compromised by increased germinability and subsequent loss or reduction of seed bank persistence. These predicted changes in the dynamics of soil seed banks increase the risk of local extinctions of these species, while the composition of the community may be altered by changes in species abundance. Our results show that the risk spreading mechanism provided by persistent seed banks could be compromised by the mechanistic impact of forecast temperature increases in arid habitats, and highlight the need to understand mechanisms that control population dynamics when attempting to address likely future impacts of climate change on biodiversity. [source] Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant virusesGLOBAL CHANGE BIOLOGY, Issue 8 2009TOMÁS CANTO Abstract Plant virus diseases constitute one of the limiting factors to the productivity of agriculture. Changes in host plants and insect vector populations that might result from climate change (their geographical distribution range, their densities, migration potential and phenology) could affect the spread of plant viruses. At the individual level, alterations in plant physiological processes that are relevant to their molecular interactions with viruses, like changes in metabolism, leaf temperature, and their effects on some processes, like the temperature-sensitive antiviral resistance based in RNA silencing, can also influence the ability of individual plants to control viral infections. In order to assess the impact that climate change may have on the incidence and spread of hemipteran-borne plant viruses, its potential effects on virus/plant interactions and hemipteran insect vectors, as well as other operating processes, which could exacerbate or mitigate them, are identified and analyzed in this review. [source] Penguin responses to climate change in the Southern OceanGLOBAL CHANGE BIOLOGY, Issue 7 2009JAUME FORCADA Abstract Penguins are adapted to live in extreme environments, but they can be highly sensitive to climate change, which disrupts penguin life history strategies when it alters the weather, oceanography and critical habitats. For example, in the southwest Atlantic, the distributional range of the ice-obligate emperor and Adélie penguins has shifted poleward and contracted, while the ice-intolerant gentoo and chinstrap penguins have expanded their range southward. In the Southern Ocean, the El Niño-Southern Oscillation and the Southern Annular Mode are the main modes of climate variability that drive changes in the marine ecosystem, ultimately affecting penguins. The interaction between these modes is complex and changes over time, so that penguin responses to climate change are expected to vary accordingly, complicating our understanding of their future population processes. Penguins have long life spans, which slow microevolution, and which is unlikely to increase their tolerance to rapid warming. Therefore, in order that penguins may continue to exploit their transformed ecological niche and maintain their current distributional ranges, they must possess adequate phenotypic plasticity. However, past species-specific adaptations also constrain potential changes in phenology, and are unlikely to be adaptive for altered climatic conditions. Thus, the paleoecological record suggests that penguins are more likely to respond by dispersal rather than adaptation. Ecosystem changes are potentially most important at the borders of current geographic distributions, where penguins operate at the limits of their tolerance; species with low adaptability, particularly the ice-obligates, may therefore be more affected by their need to disperse in response to climate and may struggle to colonize new habitats. While future sea-ice contraction around Antarctica is likely to continue affecting the ice-obligate penguins, understanding the responses of the ice-intolerant penguins also depends on changes in climate mode periodicities and interactions, which to date remain difficult to reproduce in general circulation models. [source] Adult sex ratios in wild bird populationsIBIS, Issue 4 2007PAUL F. DONALD Offspring sex ratios in wild bird populations, and the extent to which they vary from the equality expected by random genotypic sex determination, have received much recent attention. Adult sex ratios (ASRs) in wild birds, on the other hand, remain very poorly described, and many of the questions about them posed by Ernst Mayr in 1939 remain unanswered. This review assesses population-level sex ratio patterns in wild bird populations, with an emphasis on the ASR. A quantitative assessment of over 200 published estimates of ASR, covering species from a wide range of taxa, regions and habitats, supported Mayr's assertion that skewed ASRs are common in wild bird populations. On average, males outnumbered females by around 33%, and 65% of published estimates differed significantly from equality. In contrast, population-level estimates of offspring sex ratio in birds did not generally differ from equality, and mean ASR across a range of wild mammal species was strongly female-skewed. ASR distortion in birds was significantly more severe in populations of globally threatened species than in non-threatened species, a previously undescribed pattern that has profound implications for their monitoring and conservation. Higher female mortality, rather than skewed offspring sex ratio, is the main driver of male-skewed ASRs in birds, and the causes and implications of this are reviewed. While estimates of ASR in wild bird populations may be subject to a number of biases, which are discussed, there is currently no quantitative evidence that an ASR of one male to one female represents the norm in birds. A better understanding and reporting of ASRs in wild bird populations could contribute greatly to our understanding of population processes and could contribute much to theoretical and applied research and conservation. [source] Linking movement behaviour, dispersal and population processes: is individual variation a key?JOURNAL OF ANIMAL ECOLOGY, Issue 5 2009Colin Hawkes Summary 1Movement behaviour has become increasingly important in dispersal ecology and dispersal is central to the development of spatially explicit population ecology. The ways in which the elements have been brought together are reviewed with particular emphasis on dispersal distance distributions and the value of mechanistic models. 2There is a continuous range of movement behaviours and in some species, dispersal is a clearly delineated event but not in others. The biological complexities restrict conclusions to high-level generalizations but there may be principles that are common to dispersal and other movements. 3Random walk and diffusion models when appropriately elaborated can provide an understanding of dispersal distance relationships on spatial and temporal scales relevant to dispersal. Leptokurtosis in the relationships may be the result of a combination of factors including population heterogeneity, correlation, landscape features, time integration and density dependence. The inclusion in diffusion models of individual variation appears to be a useful elaboration. The limitations of the negative exponential and other phenomenological models are discussed. 4The dynamics of metapopulation models are sensitive to what appears to be small differences in the assumptions about dispersal. In order to represent dispersal realistically in population models, it is suggested that phenomenological models should be replaced by those based on movement behaviour incorporating individual variation. 5The conclusions are presented as a set of candidate principles for evaluation. The main features of the principles are that uncorrelated or correlated random walk, not linear movement, is expected where the directions of habitat patches are unpredictable and more complex behaviour when organisms have the ability to orientate or navigate. Individuals within populations vary in their movement behaviour and dispersal; part of this variation is a product of random elements in movement behaviour and some of it is heritable. Local and metapopulation dynamics are influenced by population heterogeneity in dispersal characteristics and heritable changes in dispersal propensity occur on time-scales short enough to impact population dynamics. [source] Spatial population structure of a specialist leaf-mining mothJOURNAL OF ANIMAL ECOLOGY, Issue 4 2008Sofia Gripenberg Summary 1The spatial structure of natural populations may profoundly influence their dynamics. Depending on the frequency of movements among local populations and the consequent balance between local and regional population processes, earlier work has attempted to classify metapopulations into clear-cut categories, ranging from patchy populations to sets of remnant populations. In an alternative, dichotomous scheme, local populations have been classified as self-sustaining populations generating a surplus of individuals (sources) and those depending on immigration for persistence (sinks). 2In this paper, we describe the spatial population structure of the leaf-mining moth Tischeria ekebladella, a specialist herbivore of the pedunculate oak Quercus robur. We relate moth dispersal to the distribution of oaks on Wattkast, a small island (5 km2) off the south-western coast of Finland. 3We build a spatially realistic metapopulation model derived from assumptions concerning the behaviour of individual moths, and show that the model is able to explain part of the variation in observed patterns of occurrence and colonization. 4While the species was always present on large trees, a considerable proportion of the local populations associated with small oaks showed extinction,recolonization dynamics. The vast majority of moth individuals occur on large trees. 5According to model predictions, the dominance of local vs. regional processes in tree-specific moth dynamics varies drastically across the landscape. Most local populations may be defined broadly as ,sinks', as model simulations suggest that in the absence of immigration, only the largest oaks will sustain viable moth populations. Large trees in areas of high oak density will contribute most to the overall persistence of the metapopulation by acting as sources of moths colonizing other trees. 6No single ,metapopulation type' will suffice to describe the oak,moth system. Instead, our study supports the notion that real populations are often a mix of earlier identified categories. The level to which local populations may persist after landscape modification will vary across the landscape, and sweeping classifications of metapopulations into single categories will contribute little to understanding how individual local populations contribute to the overall persistence of the system. [source] The role of group size and environmental factors on survival in a cooperatively breeding tropical passerineJOURNAL OF ANIMAL ECOLOGY, Issue 6 2006LYANNE BROUWER Summary 1Variation in survival, a major determinant of fitness, may be caused by individual or environmental characteristics. Furthermore, interactions between individuals may influence survival through the negative feedback effects of density dependence. Compared to species in temperate regions, we have little knowledge about population processes and variation in fitness in tropical bird species. 2To investigate whether variation in survival could be explained by population size or climatic variables we used capture,recapture models in conjunction with a long-term data set from an island population of the territorial, cooperatively breeding Seychelles warbler (Acrocephalus sechellensis). The lack of migration out of the study population means that our results are not confounded by dispersal. 3Annual survival was high, both for adults (84%) and juveniles (61%), and did not differ between the sexes. Although there was significant variation in survival between years, this variation could not be explained by overall population size or weather variables. 4For territorial species, resource competition will work mainly on a local scale. The size of a territory and number of individuals living in it will therefore be a more appropriate measure of density than overall population density. Consequently, both an index of territory quality per individual (food availability) and local density, measured as group size, were included as individual covariates in our analyses. 5Local density had a negative effect on survival; birds living in larger groups had lower survival probabilities than those living in small groups. Food availability did not affect survival. 6Our study shows that, in a territorial species, although density-dependent effects might not be detectable at the population level they can be detected at the individual territory level , the scale at which individuals compete. These results will help to provide a better understanding of the small-scale processes involved in the dynamics of a population in general, but in particular in tropical species living in relatively stable environments. [source] Matrix models for a changeable world: the importance of transient dynamics in population managementJOURNAL OF APPLIED ECOLOGY, Issue 3 2010Thomas H. G. Ezard Summary 1.,Matrix population models are tools for elucidating the association between demographic processes and population dynamics. A large amount of useful theory pivots on the assumption of equilibrium dynamics. The preceding transient is, however, of genuine conservation concern as it encompasses the short-term impact of natural or anthropogenic disturbance on the population. 2.,We review recent theoretical advances in deterministic transient analysis of matrix projection models, considering how disturbance can alter population dynamics by provoking a new population trajectory. 3.,We illustrate these impacts using plant and vertebrate systems across contiguous and fragmented landscapes. 4.,Short-term responses are of fundamental relevance for applied ecology, because the time-scale of transient effects is often similar to the length of many conservation projects. Investigation of the immediate, post-disturbance phase is vital for understanding how population processes respond to widespread disturbance in the short- and into the long term. 5.,Synthesis and applications.,Transient analysis is critical for understanding and predicting the consequences of management activities. By considering short-term population responses to perturbations, especially in long-lived species, managers can develop more informed strategies for species harvesting or controlling of invasive species. [source] Multispecies conservation planning: identifying landscapes for the conservation of viable populations using local and continental species prioritiesJOURNAL OF APPLIED ECOLOGY, Issue 2 2007REGAN EARLY Summary 1Faced with unpredictable environmental change, conservation managers face the dual challenges of protecting species throughout their ranges and protecting areas where populations are most likely to persist in the long term. The former can be achieved by protecting locally rare species, to the potential detriment of protecting species where they are least endangered and most likely to survive in the long term. 2Using British butterflies as a model system, we compared the efficacy of two methods of identifying persistent areas of species' distributions: a single-species approach and a new multispecies prioritization tool called ZONATION. This tool identifies priority areas using population dynamic principles (prioritizing areas that contain concentrations of populations of each species) and the reserve selection principle of complementarity. 3ZONATION was generally able to identify the best landscapes for target (i.e. conservation priority) species. This ability was improved by assigning higher numerical weights to target species and implementing a clustering procedure to identify coherent biological management units. 4Weighting British species according to their European rather than UK status substantially increased the protection offered to species at risk throughout Europe. The representation of species that are rare or at risk in the UK, but not in Europe, was not greatly reduced when European weights were used, although some species of UK-only concern were no longer assigned protection inside their best landscapes. The analysis highlights potential consequences of implementing parochial vs. wider-world priorities within a region. 5Synthesis and applications. Wherever possible, reserve planning should incorporate an understanding of population processes to identify areas that are likely to support persistent populations. While the multispecies prioritization tool ZONATION compared favourably to the selection of ,best' areas for individual species, a user-defined input of species weights was required to produce satisfactory solutions for long-term conservation. Weighting species can allow international conservation priorities to be incorporated into regional action plans but the potential consequences of any putative solution should always be assessed to ensure that no individual species of local concern will be threatened. [source] Habitat utilisation during staging affects body condition in a long distance migrant, Branta bernicla hrota: potential impacts on fitness?JOURNAL OF AVIAN BIOLOGY, Issue 6 2008R. Inger There is considerable evidence to suggest that an animal's ability to access the appropriate resources at one time of year may profoundly restrict its performance at another. For migrants, wintering and breeding periods are often connected by refuelling or staging periods, critical (particularly for females) in attaining the body reserves required to ensure successful breeding. However in many instances there are differences in the extent to which different individuals gain access to the highest quality resources. Here we demonstrate how body condition in brent geese Branta bernicla hrota, during spring staging is related to differences in marine and terrestrial habitat utilisation (inferred from stable isotope analysis). Female birds with high fat scores feed to a greater extent on marine resources. Body mass and condition are also higher in individuals utilising more marine resources. Given that body mass at spring staging is correlated with reproductive success, the extent of marine habitat maybe critical to this population. Combining this with data from previous studies of dark-bellied brent geese Branta bernicla bernicla, we predict the potential impacts of spring staging resource utilisation on future breeding success. Although staging is of short duration compared to the other components of annual cycles of migratory species, our results suggest that the quality of staging grounds may be vitally important to population processes. [source] Human settlement and baobab distribution in south-western MaliJOURNAL OF BIOGEOGRAPHY, Issue 11 2007Chris S. Duvall Abstract Aim, Human settlement establishment and reproduction of the baobab tree (Adansonia digitata) appear spatially and temporally dependent because baobabs are abundant in many settlement sites in Africa. This paper tests the spatiotemporal relationship between baobab and settlement distribution. Location, South-western Mali. Methods, In an area of 183 km2, 1240 baobabs were located and mapped, their diameters measured, and habitat characteristics recorded for each individual. All occupied (n = 9) and abandoned (n = 84) settlements were located and mapped, and occupation dates were determined through interviews. Chi-squared analysis indicated baobab habitat preferences, and bivariate point-pattern analysis tested baobab,settlement spatiotemporal independence. Results, Baobabs and human settlements are positively spatially associated at most distances and for all baobab size-class,settlement age-class pairs. However, positive spatial association is significant only at distances < 500 m, and young settlements and large baobabs are not significantly associated. Positive association between small and large baobabs is marginally significant at <300 m, but observed significance is less than that for baobab,settlement positive association. Baobab abundance is not evenly distributed across the range of habitats it occupies; recruitment is strongest in settlements and fields, and on cliffs, while mortality is highest on cliffs. Ethnographic observations suggest that human settlement practices and fruit use are the main human factors contributing to baobab,settlement positive spatial association. Main conclusions, There are three main conclusions: (1) Human settlement and baobab recruitment are spatially dependant because settlement leads directly and indirectly to the development of baobab groves at settlement sites. (2) The lower than expected abundance of mature individuals in natural habitats, and the habitat preferences of the observed population, suggest that baobabs were introduced to south-western Mali, probably centuries ago. (3) Human mobility over decadal time-scales is necessary to maintain baobab population structure in landscapes dominated by shifting land use, where baobabs are not purposefully planted. Baobab population processes in such landscapes occur at the scale of human settlement. [source] Selection of low investment in sex in a cyclically parthenogenetic rotiferJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 10 2009M. J. CARMONA Abstract Cyclical parthenogens, which combine asexual and sexual reproduction, are good models for research into the ecological and population processes affecting the evolutionary maintenance of sex. Sex in cyclically parthenogenetic rotifers is necessary for diapausing egg production, which is essential to survive adverse conditions between planktonic growing seasons. However, within a planktonic season sexual reproduction prevents clonal proliferation. Hence, clones with a low propensity for sex should be selected, becoming dominant in the population as the growing season progresses. In this context, we studied the dynamics of the heritable variation in propensity for sexual reproduction among clones of a Brachionus plicatilis rotifer population in a temporary Mediterranean pond during the period the species occurred in plankton. Clonal isolates displayed high heritable variation in their propensity for sex. Moreover, the frequency of clones with low propensity for sex increased during the growing season, which supports the hypothesized short-term selection for low investment in sex within a growing season. These results demonstrate (1) the inherent instability of the cyclical parthenogenetic life cycle, (2) the cost of sexual reproduction in cyclical parthenogens where sex produces diapausing eggs and (3) the role of the association between sexual reproduction and diapause in maintaining sex in these cyclical parthenogens. [source] Implications of ,cyclical' population dynamics for the conservation of Irish hares (Lepus timidus hibernicus)JOURNAL OF ZOOLOGY, Issue 3 2006J. C. Reynolds Abstract The Irish hare Lepus timidus hibernicus is of priority conservation concern in Northern Ireland, based on a perceived decline in abundance during the 20th century and on two surveys in 1994,1996 and 2002 that suggested low densities. We reanalysed a 10-year time series [Northern Ireland Rabbit Survey (NIRS)] that has been key evidence of decline, to derive an annual index of abundance during 1986,1995. This showed a rise to a double peak followed by a trough. We compared these Northern Ireland data with two datasets for Lepus timidus scoticus. A 40-year annual index derived from hare bags on Scottish shooting estates [National Game-Bag Census (NGC)] showed strong fluctuations, each lasting several years. Autocorrelation analysis of the NGC data showed elements of cyclical behaviour, with distinct phases and a 16-year period. A previously published 30-year survey of introduced L. t. scoticus in northern England also showed large multi-year fluctuations and phasic behaviour, albeit on a shorter time scale. The NIRS index was strongly correlated with NGC data for the same years, suggesting that it too reflected part of a natural population dynamic. The Species Action Plan for L. t. hibernicus in Northern Ireland includes the aims of maintaining the existing range and demonstrating increase by 2005, and of doubling the population by 2010. We suggest that these aims and the supporting monitoring strategy are inappropriate for a species that shows multi-annual fluctuations in abundance throughout its geographical range. It is important to distinguish self-correcting population processes from trends requiring remedial conservation action. [source] Support for a metapopulation structure among mammalsMAMMAL REVIEW, Issue 3 2009PIETER I. OLIVIER ABSTRACT 1The metapopulation metaphor is increasingly used to explain the spatial dynamics of animal populations. However, metapopulation structure is difficult to identify in long-lived species that are widely distributed in stochastic environments, where they can resist extinctions. The literature on mammals may not provide supporting evidence for classic metapopulation dynamics, which call for the availability of discrete habitat patches, asynchrony in local population dynamics, evidence for extinction and colonization processes, and dispersal between local populations. 2Empirical evidence for metapopulation structure among mammals may exist when applying more lenient criteria. To meet these criteria, mammals should live in landscapes as discrete local breeding populations, and their demography should be asynchronous. 3We examined the literature for empirical evidence in support of the classical criteria set by Hanski (1999), and for the more lenient subset of criteria proposed by Elmhagen & Angerbjörn (2001). We suggest circumstances where metapopulation theory could be important in understanding population processes in mammals of different body sizes. 4The patchy distribution of large (>100 kg) mammals and dispersal often motivate inferences in support of a metapopulation structure. Published studies seldom address the full suite of classical criteria. However, studies on small mammals are more likely to record classic metapopulation criteria than those on large mammals. The slow turnover rate that is typical for medium-sized and large mammals apparently makes it difficult to identify a metapopulation structure during studies of short duration. 5To identify a metapopulation structure, studies should combine the criteria set by Hanski (1999) and Elmhagen & Angerbjörn (2001). Mammals frequently live in fragmented landscapes, and processes involved in the maintenance of a metapopulation structure should be considered in conservation planning and management. [source] Host specificity and reproductive success of yucca moths (Tegeticula spp.MOLECULAR ECOLOGY, Issue 24 2009Lepidoptera: Prodoxidae) mirror patterns of gene flow between host plant varieties of the Joshua tree (Yucca brevifolia: Agavaceae) Abstract Coevolution between flowering plants and their pollinators is thought to have generated much of the diversity of life on Earth, but the population processes that may have produced these macroevolutionary patterns remain unclear. Mathematical models of coevolution in obligate pollination mutualisms suggest that phenotype matching between plants and their pollinators can generate reproductive isolation. Here, we test this hypothesis using a natural experiment that examines the role of natural selection on phenotype matching between yuccas and yucca moths (Tegeticula spp.) in mediating reproductive isolation between two varieties of Joshua tree (Yucca brevifolia var. brevifolia and Y. brevifolia var. jaegeriana). Using passive monitoring techniques, DNA barcoding, microsatellite DNA genotyping, and sibship reconstruction, we track host specificity and the fitness consequences of host choice in a zone of sympatry. We show that the two moth species differ in their degree of host specificity and that oviposition on a foreign host plant results in the production of fewer offspring. This difference in host specificity between the two moth species mirrors patterns of chloroplast introgression from west to east between host varieties, suggesting that natural selection acting on pollinator phenotypes mediates gene flow and reproductive isolation between Joshua-tree varieties. [source] Recombination and lineage-specific gene loss in the aflatoxin gene cluster of Aspergillus flavusMOLECULAR ECOLOGY, Issue 23 2009GEROMY G. MOORE Abstract Aflatoxins produced by Aspergillus flavus are potent carcinogens that contaminate agricultural crops. Recent efforts to reduce aflatoxin concentrations in crops have focused on biological control using nonaflatoxigenic A. flavus strains AF36 (=NRRL 18543) and NRRL 21882 (the active component of afla-guard®). However, the evolutionary potential of these strains to remain nonaflatoxigenic in nature is unknown. To elucidate the underlying population processes that influence aflatoxigenicity, we examined patterns of linkage disequilibrium (LD) spanning 21 regions in the aflatoxin gene cluster of A. flavus. We show that recombination events are unevenly distributed across the cluster in A. flavus. Six distinct LD blocks separate late pathway genes aflE, aflM, aflN, aflG, aflL, aflI and aflO, and there is no discernable evidence of recombination among early pathway genes aflA, aflB, aflC, aflD, aflR and aflS. The discordance in phylogenies inferred for the aflW/aflX intergenic region and two noncluster regions, tryptophan synthase and acetamidase, is indicative of trans-species evolution in the cluster. Additionally, polymorphisms in aflW/aflX divide A. flavus strains into two distinct clades, each harbouring only one of the two approved biocontrol strains. The clade with AF36 includes both aflatoxigenic and nonaflatoxigenic strains, whereas the clade with NRRL 21882 comprises only nonaflatoxigenic strains and includes all strains of A. flavus missing the entire gene cluster or with partial gene clusters. Our detection of LD blocks in partial clusters indicates that recombination may have played an important role in cluster disassembly, and multilocus coalescent analyses of cluster and noncluster regions indicate lineage-specific gene loss in A. flavus. These results have important implications in assessing the stability of biocontrol strains in nature. [source] Comparison of quantitative and molecular genetic variation of native vs. invasive populations of purple loosestrife (Lythrum salicaria L., Lythraceae)MOLECULAR ECOLOGY, Issue 14 2009YOUNG JIN CHUN Abstract Study of adaptive evolutionary changes in populations of invasive species can be advanced through the joint application of quantitative and population genetic methods. Using purple loosestrife as a model system, we investigated the relative roles of natural selection, genetic drift and gene flow in the invasive process by contrasting phenotypical and neutral genetic differentiation among native European and invasive North American populations (QST , FST analysis). Our results indicate that invasive and native populations harbour comparable levels of amplified fragment length polymorphism variation, a pattern consistent with multiple independent introductions from a diverse European gene pool. However, it was observed that the genetic variation reduced during subsequent invasion, perhaps by founder effects and genetic drift. Comparison of genetically based quantitative trait differentiation (QST) with its expectation under neutrality (FST) revealed no evidence of disruptive selection (QST > FST) or stabilizing selection (QST < FST). One exception was found for only one trait (the number of stems) showing significant sign of stabilizing selection across all populations. This suggests that there are difficulties in distinguishing the effects of nonadaptive population processes and natural selection. Multiple introductions of purple loosestrife may have created a genetic mixture from diverse source populations and increased population genetic diversity, but its link to the adaptive differentiation of invasive North American populations needs further research. [source] Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studiesMOLECULAR ECOLOGY, Issue 7 2009UMA RAMAKRISHNAN Abstract The evolutionary history of a population involves changes in size, movements and selection pressures through time. Reconstruction of population history based on modern genetic data tends to be averaged over time or to be biased by generally reflecting only recent or extreme events, leaving many population historic processes undetected. Temporal genetic data present opportunities to reveal more complex population histories and provide important insights into what processes have influenced modern genetic diversity. Here we provide a synopsis of methods available for the analysis of ancient genetic data. We review 29 ancient DNA studies, summarizing the analytical methods and general conclusions for each study. Using the serial coalescent and a model-testing approach, we then re-analyse data from two species represented by these data sets in a common interpretive framework. Our analyses show that phylochronologic data can reveal more about population history than modern data alone, thus revealing ,cryptic' population processes, and enable us to determine whether simple or complex models best explain the data. Our re-analyses point to the need for novel methods that consider gene flow, multiple populations and population size in reconstruction of population history. We conclude that population genetic samples over large temporal and geographical scales, when analysed using more complex models and the serial coalescent, are critical to understand past population dynamics and provide important tools for reconstructing the evolutionary process. [source] Climate mediated exogenous forcing and synchrony in populations of the oak aphid in the UKOIKOS, Issue 2 2009Sergio A. Estay Contemporary population dynamics theory suggests that animal fluctuations in nature are the result of the combined forces of intrinsic and exogenous factors. Weather is the iconic example of an exogenous force. The common approach for analyzing the relationship between population size and climatic variables is by simple correlation or using the climate as an additive covariable in statistical models. Here, we evaluated different functional forms in which climatic variables could influence population dynamics of the oak aphid Tuberculatus annulatus both in each locality and in relation to synchrony between localities. Results indicate that in at least four of eight aphid populations, climate influences population dynamics by modifying the carrying capacity of the system (lateral effect mediated by winter precipitation). Additionally, path analysis showed that synchrony in population dynamics is highly correlated with synchrony in winter precipitation regime, and the spatial scale of both processes is similar, which suggests that this is an example of the Moran effect. Our results show the key effects of precipitation on intra and inter population processes of this aphid. The methods used, mixing population dynamics modelling and test of synchrony, allowed us to connect the direct and indirect effects of exogenous variables into each population with patterns of synchrony inter populations. [source] The methodological potential of focus groups in population geographyPOPULATION, SPACE AND PLACE (PREVIOUSLY:-INT JOURNAL OF POPULATION GEOGRAPHY), Issue 2 2006Emily Skop Abstract Within population geography, the last decade has seen an explosion in qualitative work in terms of the types of work, the topics addressed, and the potential theoretical consequences. Yet focus groups have received less attention as an alternative method. This paper highlights the particular promises, challenges, and practicality of doing focus group research in population geography. I begin by addressing how this research method answers ongoing pleas within the subdiscipline for non-essentialist ways of thinking about taken-for-granted social categories and labels. I then outline two other promising outcomes of this method, including the potential for unique and spontaneous group interactions, and the potential for the empowerment of participants. I use the rest of the paper to provide a review of some of the methodological details of focus group research, with the idea of encouraging more population geographers to engage with this method. Throughout, I contend that focus groups have the capability to further our understanding of population processes, and to connect population geography research to ongoing debates within the broader discipline. Observations stem from an extensive review of existing focus group research, along with my own focus group research conducted with residents living in multiracial suburban communities. Copyright © 2006 John Wiley & Sons, Ltd. [source] Female segregation patterns of the putative Y-chromosome-specific microsatellite markers INRA124 and INRA126 do not support their use for cattle population studiesANIMAL GENETICS, Issue 4 2009L. Pérez-Pardal Summary Here we tested the segregation and paternal compatibility of markers INRA124 and INRA126 on female DNA in 10 different cattle families, in order to clarify the usefulness of these microsatellites for the study of male-mediated population processes in cattle. Their performance was compared with that of four microsatellites located in the PAR-BTAY (UMN0108, UMN0803, UMN0929 and UMN0905) and another one male-specific microsatellite (INRA189). INRA124 and INRA126 amplified the same sized fragment in both sexes. Same size alleles were sequenced and the high homology found allowed us to rule out non-specific female amplification. INRA124 showed full parental compatibility, whilst the locus INRA126 showed 55% parental incompatibility. Based on these observations, it is recommended that markers INRA124 and INRA126 should not be used in studies to characterize male-mediated genetic events in cattle. [source] | |||||||||||||||||||||||||