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Population Biology (population + biology)
Selected AbstractsA Life Table for Psittacosaurus lujiatunensis: Initial Insights Into Ornithischian Dinosaur Population BiologyTHE ANATOMICAL RECORD : ADVANCES IN INTEGRATIVE ANATOMY AND EVOLUTIONARY BIOLOGY, Issue 9 2009Gregory M. Erickson Abstract Very little is known about nonavian dinosaur population biology. Multi-individual sampling and longevity estimation using growth line counts can be used to construct life tables,the foundation for population analyses in ecology. Here we have determined the size and age distribution for a sample consisting of 80 individuals of the small ornithischian, Psittacosaurus lujiatunensis from the early Cretaceous Yixian Formation of China. Their ages ranged from less than a year to eleven years and the distribution was strongly right-skewed. This is consistent with taphonomic interpretations that these animals derive from a catastrophic death assemblage. The static life table analysis revealed the same general pattern of survivorship as tyrannosaurs including increased attrition before the attainment of full adult size. This may reflect increased physiological demands and/or predation exposure associated with reproduction. Collectively these findings suggest that most nonavian dinosaurs may have had a similar life history strategy. Anat Rec, 292:1514,1521, 2009. © 2009 Wiley-Liss, Inc. [source] Population biology of the red gurnard (Aspitrigla cuculus L.; Triglidae) in the inshore waters of Eastern Anglesey and Northwest WalesJOURNAL OF APPLIED ICHTHYOLOGY, Issue 4 2010A. L. Marriott Summary ICES has identified red gurnard Aspitrigla cuculus (L.) as a potential commercial species and recommended that monitoring programmes should be conducted to derive information on biological parameters for stock assessment purposes. In this paper, data on the population biology of red gurnard in the coastal waters of Northwest Wales and Eastern Anglesey are presented. Total length (TL) of fish sampled ranged from 15.4 to 35.0 cm (males) and 10.5 to 43.1 cm (females), with the majority of females between 20 and 30 cm TL (70.0%) and males between 20 and 30 cm TL (71.0%). TL/weight (W) relations were similar between immature and mature individuals for both sexes and between both sexes (all maturity stages combined), producing a combined data equation W = 0.005 TL3.19. Age of fish ranged from 1 to 7 years and 1 to 6 years, respectively, for females and males, with the majority of females age 3 (37%) and the majority of males age 2 (49%). The age structures of female and male red gurnards were significantly different, with the older age classes consisting predominantly of female fish. Both males and females exhibited similar asymptotic growth patterns; the combined von Bertalanffy growth function was . Instantaneous rates of total mortality were calculated as 1.13 year,1 for males and 0.98 year,1 for females. The size (L50) and age at first maturity (A50) were estimated to be 26.3 cm TL and 3.6 years for males, 28.1 cm TL and 3.5 years for females and 25.6 cm TL and 3.7 years for both sexes combined. [source] Population biology and status of exploitation of introduced garfish Belone belone euxini (Günther, 1866) in the Black SeaJOURNAL OF APPLIED ICHTHYOLOGY, Issue 5 2006O. Samsun Summary The garfish Belone belone euxini (Günther, 1866) is a commercially important pelagic fish species in Sinop artisanal fishery, which is showing a decreasing trend in catch results. As a basis for fisheries management a sampling program was carried out between October 2000 and September 2001 along the Turkish coast of the Black Sea, to study the population structure, growth, and reproduction cycle of garfish in the area, and to achieve a rough estimate of exploitation. The length,weight relationship and von Bertalanffy growth parameters were estimated as W = 0.00076 L3.137, L, = 74.64 cm, K = 0.13 year,1, to = ,3.67, respectively. First sexual maturity was estimated at age 2 and at a total length of 38.8 cm for females. The spawning period was from May to September. The total fecundity,length relationship was estimated as F = 0.0041 L4.1086 (r2 = 0.92). Mortality rates were Z = 1.24 year,1, M = 0.23 year,1and F = 1.01 year,1 for total, natural, and fishing mortality, respectively. The exploitation ratio E = 0.81 indicates that the population is heavily exploited. [source] Population biology of African buffalo (Syncerus caffer) at Hluhluwe-iMfolozi Park, South AfricaAFRICAN JOURNAL OF ECOLOGY, Issue 3 2007Anna E. Jolles First page of article [source] A simple persistence condition for structured populationsECOLOGY LETTERS, Issue 7 2006Alan Hastings Abstract The fundamental question in both basic and applied population biology of whether a species will increase in numbers is often investigated by finding the population growth rate as the largest eigenvalue of a deterministic matrix model. For a population classified only by age, and not stage or size, a simpler biologically interpretable condition can be used, namely whether R0, the mean number of offspring per newborn, is greater than one. However, for the many populations not easily described using only age classes, stage-structured models must be used for which there is currently no quantity like R0. We determine analogous quantities that must be greater than one for persistence of a general structured population model that have a similar useful biological interpretation. Our approach can be used immediately to determine the magnitude of changes and interactions that would either allow population persistence or would ensure control of an undesirable species. [source] Juvenile growth of two tilapia species in lakes Naivasha and Baringo, KenyaECOLOGY OF FRESHWATER FISH, Issue 3 2008J. R. Britton Abstract,,, Tilapia species in East African lakes often form the basis of commercial fisheries, with information on their population biology assisting their management. This study utilised otolith microstructure, with validation by modal progression analysis, to provide growth data for two tilapia species in two Kenyan lakes for the first time. Otolith microstructure revealed the growth rate of Oreochromis niloticus baringoensis, a sub-species endemic to Lake Baringo, was fast compared with populations of Oreochromis niloticus; mean daily growth rates were >0.50 mm·d,1 in fish between 12 and 53 mm total length. Growth of Oreochromis leucostictus in Lake Naivasha was also relatively fast when compared with the growth rates of other tilapia species, with mean daily growth rates of approximately 0.35,0.48 mm·d,1 in fish between 10 and 56 mm total length. Growth rates of both species were well described by the Gompertz model and were corroborated by modal progression analysis that revealed similar daily growth rates in modes of young-of-the-year fish. [source] THE DIFFUSIVE SPREAD OF ALLELES IN HETEROGENEOUS POPULATIONSEVOLUTION, Issue 3 2004Garrick T. Skalski Abstract The spread of genes and individuals through space in populations is relevant in many biological contexts. I study, via systems of reaction-diffusion equations, the spatial spread of advantageous alleles through structured populations. The results show that the temporally asymptotic rate of spread of an advantageous allele, a kind of invasion speed, can be approximated for a class of linear partial differential equations via a relatively simple formula, c= 2,rD, that is reminiscent of a classic formula attributed to R. A. Fisher. The parameters r and D, represent an asymptotic growth rate and an average diffusion rate, respectively, and can be interpreted in terms of eigenvalues and eigenvectors that depend on the population's demographic structure. The results can be applied, under certain conditions, to a wide class of nonlinear partial differential equations that are relevant to a variety of ecological and evolutionary scenarios in population biology. I illustrate the approach for computing invasion speed with three examples that allow for heterogeneous dispersal rates among different classes of individuals within model populations. [source] Molecular typing of meningococci: recommendations for target choice and nomenclatureFEMS MICROBIOLOGY REVIEWS, Issue 1 2007Keith A. Jolley Abstract The diversity and dynamics of Neisseria meningitidis populations generate a requirement for high resolution, comprehensive, and portable typing schemes for meningococcal disease surveillance. Molecular approaches, specifically DNA amplification and sequencing, are the methods of choice for various reasons, including: their generic nature and portability, comprehensive coverage, and ready implementation to culture negative clinical specimens. The following target genes are recommended: (1) the variable regions of the antigen-encoding genes porA and fetA and, if additional resolution is required, the porB gene for rapid investigation of disease outbreaks and investigating the distribution of antigenic variants; (2) the seven multilocus sequence typing loci,these data are essential for the most effective national, and international management of meningococcal disease, as well as being invaluable in studies of meningococcal population biology and evolution. These targets have been employed extensively in reference laboratories throughout the world and validated protocols have been published. It is further recommended that a modified nomenclature be adopted of the form: serogroup: PorA type: FetA type: sequence type (clonal complex), thus: B: P1.19,15: F5-1: ST-33 (cc32). [source] Implications of interannual variability in euphausiid population biology for fish production along the south-west coast of Vancouver Island: a synthesisFISHERIES OCEANOGRAPHY, Issue 1 2002R. W. Tanasichuk This is a synthesis of published and unpublished research on euphausiid and fish populations using the south-west coast of Vancouver Island. Overall, the studies covered 1985,98, when there were two ENSO events and considerable variation in upwelling. The population biology of the dominant euphausiids (Thysanoessa spinifera, Euphausiapacifica) was monitored during 1991,98. The species abundance trends differed. Results of simple correlation analyses suggested that variations in temperature, salinity and upwelling do not explain variations in the abundance of larval or adult euphausiids, or in the abundance of portions of euphausiid populations on which fish feed. I found significant interannual variations in daily ration of the dominant planktivorous fish species, but euphausiids remained the most important prey. Pacific hake (Merluccius productus), the dominant planktivore, fed on larger (>17 mm) T. spinifera, even though the biomass of this part of the euphausiid biomass decreased by 75% between 1991 and 1997, but Pacific herring (Clupea pallasi) may have begun feeding on smaller E. pacifica. Therefore, any study of the relationship between fish production and krill biology must consider that part of the euphausiid biomass exploited by fish. In addition, some fish species and/or life history stages appeared to adapt to changes in euphausiid availability, while others did not. Such variation in adaptations also has to be described and considered to understand how changes in euphausiid biology affect fish productivity. [source] Morphological clines in dendritic landscapesFRESHWATER BIOLOGY, Issue 9 2007A. CHAPUT-BARDY Summary 1. In complex landscapes such as river networks, organisms usually face spatio-temporal heterogeneity and gradients in geomorphological, water, ecological or landscape characteristics are often observed at the catchment scale. These environmental variables determine developmental conditions for larval stages of freshwater insects and influence adult phenotypic characteristics. Environmental clines are therefore expected to generate morphological clines. Such a process has the potential to drive gradual geographical change in morphology-dependent life history traits, such as dispersal. 2. We studied the influence of aquatic and terrestrial environmental factors on morphological variations in Calopteryx splendens across the Loire drainage. To investigate these effects we took explicitly into account the hierarchical structure of the river network. 3. We analysed eight morphological traits. Results showed significant body size variation between tributaries and the presence of a morphological cline at the drainage scale. We observed an effect of pH and water temperature on body size. Individuals in downstream sites were larger than individuals in upstream sites, and adults whose larval stages were exposed to alkaline pH and high temperatures during summer were larger. 4. Body size affects flight abilities in insects. Thus, our results suggest that morphological clines may generate an asymmetric dispersal pattern along the downstream,upstream axis, downstream populations dispersing farther than upstream ones. Such a process is expected to influence population genetic structure at the drainage scale if larval drift and floods do not balance an asymmetrical dispersal pattern of adults along the downstream,upstream gradient. To assess the influence of environmental gradients on the variation of life history traits it is important to understand the population biology of freshwater insects, and more generally of riverine organisms. It is also essential to integrate such data in conservation or restoration programmes. [source] Predicting the past distribution of species climatic nichesGLOBAL ECOLOGY, Issue 5 2009David Nogués-Bravo ABSTRACT Predicting past distributions of species climatic niches, hindcasting, by using climate envelope models (CEMs) is emerging as an exciting research area. CEMs are used to examine veiled evolutionary questions about extinctions, locations of past refugia and migration pathways, or to propose hypotheses concerning the past population structure of species in phylogeographical studies. CEMs are sensitive to theoretical assumptions, to model classes and to projections in non-analogous climates, among other issues. Studies hindcasting the climatic niches of species often make reference to these limitations. However, to obtain strong scientific inferences, we must not only be aware of these potential limitations but we must also overcome them. Here, I review the literature on hindcasting CEMs. I discuss the theoretical assumptions behind niche modelling, i.e. the stability of climatic niches through time and the equilibrium of species with climate. I also summarize a set of ,recommended practices' to improve hindcasting. The studies reviewed: (1) rarely test the theoretical assumptions behind niche modelling such as the stability of species climatic niches through time and the equilibrium of species with climate; (2) they only use one model class (72% of the studies) and one palaeoclimatic reconstruction (62.5%) to calibrate their models; (3) they do not check for the occurrence of non-analogous climates (97%); and (4) they do not use independent data to validate the models (72%). Ignoring the theoretical assumptions behind niche modelling and using inadequate methods for hindcasting CEMs may well entail a cascade of errors and naïve ecological and evolutionary inferences. We should also push integrative research lines linking macroecology, physiology, population biology, palaeontology, evolutionary biology and CEMs for a better understanding of niche dynamics across space and time. [source] River corridor plants (Stromtalpflanzen) in Central European lowland: a review of a poorly understood plant distribution patternGLOBAL ECOLOGY, Issue 5 2001Michael Burkart Abstract Aim and location In Central European lowlands certain plant species grow mainly or exclusively in the corridors of large rivers. In German-speaking plant geography, they are known as ,Stromtalpflanzen'. The aim of this paper is to review the literature about definitions, explanations and species characteristics and to suggest future directions in research concerning this species group. Results A preliminary list contains 129 ecologically heterogeneous plant species. The mechanisms generating the peculiar distribution pattern may include hydrochory along river corridors, high levels of disturbance by water, variable water availability including inundation and summer drought, warm summers and high nutrient supply on alluvial soils. There is evidence from observational studies for all above mechanisms. However, none of them has been tested experimentally. Demographic data of river corridor plants are limited to very few species, including mainly invasive annuals (Artemisia annua, Bidens frondosa, Cuscuta campestris, Xanthium albinum) and annual (hemi)parasites (Cuscuta campestris, Melampyrum cristatum). Metapopulation studies do not exist to date for European species. Apart from their habitat requirements, river corridor plants were grouped according to their similarities in overall distribution pattern or their distribution within particular river corridors. Main conclusions River corridor plants include a high proportion of threatened plant species. In order to preserve them, and in order to understand the mechanisms generating the peculiar distribution pattern, much more has to be known about their population biology and metapopulation dynamics. [source] A comparison of infestation patterns by Ixodes ticks in urban and rural populations of the Common Blackbird Turdus merulaIBIS, Issue 4 2002Arnaud Gregoire Although spatial variation in the patterns of parasite infestations among host populations may have important ecological and epidemiological consequences, the causes underlying such variation are poorly known. In the context of a long-term study on the population biology of Common Blackbirds Turdus merula, we examined the prevalence and intensity of infestation by Ixodes ticks between birds living in rural vs. urban habitats. The overall prevalence of tick infestations was significantly higher in the rural habitat where 74% of individuals (n = 130) were infested. This result contrasted markedly with the situation in the urban habitat where less than 2% of individuals (n = 360) carried ticks. There was no significant effect of the sex of the host on the intensity or prevalence of tick infestations. There was a significant effect of the age of the host on tick infestations essentially due to the absence of ticks on nestlings. Possible mechanisms responsible for the differences between habitats could include differences in tick survival and/or host resistance towards ticks. Previous studies have shown higher population densities and suggested longer survival for Blackbirds in urban than in rural habitats. Given that ixodid ticks are known to transmit pathogens like Borrelia spp. to wild birds, and that Blackbirds can act as reservoirs for these pathogens, the infection patterns observed in our study area provide a suitable situation to study the interrelations between ticks, Blackbirds and pathogens. [source] Early life history of the Mediterranean gorgonian Paramuricea clavata: implications for population dynamicsINVERTEBRATE BIOLOGY, Issue 1 2008Cristina Linares Abstract. Knowledge about early stages of marine sessile invertebrates dispersing by means of free-swimming propagules is fundamental toward understanding their population biology. In this study, we describe and quantify survivorship of early stages of the gorgonian Paramuricea clavata to contribute to the understanding of their implications on population dynamics of this emblematic species of the Mediterranean hard-bottom communities. Spawning was recorded in June for the 3 years studied (2001,2003). High levels of fertilization rate were observed during the main spawning in 2001 and 2002 (62,69%). This appears to be related to the surface brooding mode of development, synchronous spawning, and high fecundity of the species. The timing of development of the blastulae was ,24 h and the planulae appeared after 48,72 h. In the laboratory, metamorphosis into polyp started between 8 and 25 d, but this timing may have been delayed by lack of unknown appropriate cues for settlement. The behavior of first developed planulae exhibited a marked negative phototaxis that may be a strategy to avoid competition with fast-growing algae on photophilous habitats. Despite the high fertilization rate in P. clavata, laboratory and field experiences indicate that survivorship through the planulae and polyp stages was very low, given that none of the settled polyps survived for >7 months in both experimental years. The low survival of the early stages may help explain the low recruitment rates observed in the field in addition to indicating major limitations for colonization of new areas and for persistence of the local population under disturbances. [source] Changes in population biology of two succulent shrubs along a grazing gradientJOURNAL OF APPLIED ECOLOGY, Issue 4 2003Corinna Riginos Summary 1Heavy livestock grazing in Namaqualand, South Africa, is threatening the region's unique diversity of succulent shrubs. This is especially true in the communally managed lands, where grazing is centred around fixed enclosures (stockposts) in which animals stay overnight. In this study we set out to determine the effects of a semi-permanent stockpost on the composition of the surrounding vegetation and the mechanisms by which grazing limits the persistence of leaf-succulent shrub populations. 2We used the grazing gradient created by a stockpost to examine the impacts of grazing on vegetation composition and changes in mortality, reproductive output and seedling establishment for the leaf-succulent species Ruschia robusta and Cheiridopsis denticulata. 3Vegetation composition was found to change from a community dominated by the unpalatable shrub Galenia africana at high grazing intensities to a community dominated by the palatable leaf-succulent shrub R. robusta at lower grazing intensities. 4Mortality of the leaf-succulents R. robusta and C. denticulata was high at the sites closest to the stockpost, while fruit production and seedling germination were substantially reduced over distances of 800 m and 2 km for the two species, respectively. Seedling establishment was not limited by either grazing or microsite availability. Thus reduction in reproductive output is the greatest impact of heavy grazing on these two species. 5Synthesis and applications. This study demonstrates that marked zonation in vegetation composition and population biology can develop around a fixed stockpost and that the greatest impact of grazing on the two leaf-succulent species studied is the suppression of flower and fruit production. Consistent suppression of reproductive output could have long-term consequences for the persistence of succulent shrub populations in the heavily grazed communal lands of Namaqualand. We recommend that (i) herders should be encouraged to relocate their stockposts regularly to prevent the development of centres of degradation, and (ii) areas should be relieved periodically of all grazing pressure to allow for successful seed set of native shrubs. [source] Population structure and establishment of the threatened long-lived perennial Scorzonera humilis in relation to environmentJOURNAL OF APPLIED ECOLOGY, Issue 2 2002Guy Colling Summary 1The intensification of agriculture has resulted in the decline of many plant species of nutrient-poor wet grasslands. At some sites local populations of long-lived characteristic species have persisted and might benefit from recent extensification schemes. However, little is known about the population biology of these plants, and the prospects for the populations are uncertain. 2We studied the population structure and establishment of the long-lived Scorzonera humilis in 23 populations in Luxembourg and neighbouring Belgium. Two types of populations could be distinguished according to their population structure: regenerating populations, with a high proportion of plants with only one or a few rosettes, and aged populations, with a low proportion of small, young plants but a high proportion of individuals with many rosettes. The total density of Scorzonera individuals was higher in regenerating than in aged populations. 3Within sites, S. humilis was restricted to more open and nutrient-poor patches. The composition of the vegetation in plots where S. humilis was present was significantly different from that of plots without the species, indicating that S. humilis is restricted to particular microhabitats. 4In multiple regression analyses, environmental variables explained a large part of the variation in the total density of genets, the density of genets of different size and the density of rosettes. The main variables of influence were site productivity and soil moisture. With increasing productivity and decreasing soil moisture the proportion of small genets decreased and that of large genets increased. Increased productivity had contrasting effects at the genet and ramet (rosette) levels. While genet density decreased, ramet density increased, indicating that if a site is fertilized, recruitment of new genets and survival of genets is reduced, but growth of surviving genets is increased. 5The results of a sowing experiment indicated that an aged population structure was due to a lack of recruitment. The number of seeds that germinated and the proportion of seedlings that survived until the next summer were positively correlated with soil moisture and negatively with productivity. Germination rate and establishment success were significantly higher in Molinion grassland than in the Calthion grasslands. 6The results suggest that for long-lived species the size and number of populations may not be good indicators of the status of a species. In S. humilis large populations (> 1000 genets) still exist, but all are of the aged type. In order to preserve existing populations of S. humilis, management should aim to reduce productivity and increase soil moisture. [source] Population biology of the red gurnard (Aspitrigla cuculus L.; Triglidae) in the inshore waters of Eastern Anglesey and Northwest WalesJOURNAL OF APPLIED ICHTHYOLOGY, Issue 4 2010A. L. Marriott Summary ICES has identified red gurnard Aspitrigla cuculus (L.) as a potential commercial species and recommended that monitoring programmes should be conducted to derive information on biological parameters for stock assessment purposes. In this paper, data on the population biology of red gurnard in the coastal waters of Northwest Wales and Eastern Anglesey are presented. Total length (TL) of fish sampled ranged from 15.4 to 35.0 cm (males) and 10.5 to 43.1 cm (females), with the majority of females between 20 and 30 cm TL (70.0%) and males between 20 and 30 cm TL (71.0%). TL/weight (W) relations were similar between immature and mature individuals for both sexes and between both sexes (all maturity stages combined), producing a combined data equation W = 0.005 TL3.19. Age of fish ranged from 1 to 7 years and 1 to 6 years, respectively, for females and males, with the majority of females age 3 (37%) and the majority of males age 2 (49%). The age structures of female and male red gurnards were significantly different, with the older age classes consisting predominantly of female fish. Both males and females exhibited similar asymptotic growth patterns; the combined von Bertalanffy growth function was . Instantaneous rates of total mortality were calculated as 1.13 year,1 for males and 0.98 year,1 for females. The size (L50) and age at first maturity (A50) were estimated to be 26.3 cm TL and 3.6 years for males, 28.1 cm TL and 3.5 years for females and 25.6 cm TL and 3.7 years for both sexes combined. [source] Aspects of the population biology of Cephalopholis fulva from the central coast of BrazilJOURNAL OF APPLIED ICHTHYOLOGY, Issue 3 2009J. N. Araújo Summary Age and size composition samples of Cephalopholis fulva from the central coast of Brazil were collected from research surveys and from line fishery landings between 1997 and 1999. The samples suggest that the submarine banks located further offshore are characterized by having fish larger than those caught in the continental shelf area. Although the oldest specimens were caught in the continental shelf area, only 34.6% of the specimens were older than 10 years as compared to 51.4% in the submarine banks. The observed size and age differences seem to be related to the lower fishing pressure on the submarine banks, although size composition bias resulting from different sampling procedures and different catchability between sites cannot be excluded. A resampling scheme was used to overcome the influences of size composition bias and to generate a three-dimensional plot of parameters as a means to compare the growth between the submarine banks and the continental shelf area; this plot showed no overlap between growth patterns of the two sites. The natural mortality (M) estimate based on the oldest specimen observed was 0.17 year,1. Total mortality (Z) estimated from catch-curve analyses using samples from both areas varied from 0.24 to 0.34 year,1, depending on the age range used. With this level of mortality, the C. fulva stock in the central coast area of Brazil was close to or already at the level of overexploitation in the late 1990s. [source] The evolution of population biology: past, present and futureJOURNAL OF BIOGEOGRAPHY, Issue 11 2005Joanna Freeland No abstract is available for this article. [source] Diversity, dynamics and reproduction in a community of small mammals in Upper Guinea, with emphasis on pygmy mice ecologyAFRICAN JOURNAL OF ECOLOGY, Issue 3 2010Elisabeth Fichet-Calvet Abstract As part of a large survey on reservoirs of Lassa fever in Guinea, three villages were investigated in high endemic zone, close to Sierra Leone border. Biodiversity of the small mammal community is presented in this study through a standardized trapping in houses, cultivations and forest. Identification of the small mammals was based on morphology and by molecular technique for sibling species. Of the 1123 specimens collected in 2003,2005, we identified seventeen species (thirteen Muridae, four Soricidae), leading to high diversity (Shannon index = 1.6,1.8) and high equitability (evenness index = 0.7,0.8) in cultivations and forest. In houses conversely, the rodent community was dominated by Mastomys natalensis (95,98%), leading to low diversity and equitability. Dynamics and reproduction were investigated in two species of pygmy mice, Mus mattheyi and Mus minutoides, two species of Praomys, P. daltoni and P. rostratus, and in Mastomys erythroleucus. The pygmy mice were abundant in cultivations in early rainy season, and reproduced from rainy to dry season. Praomys daltoni was also found more abundant in cultivations and seemed to reproduce between rainy and dry season, whereas P. rostratus preferred forest and cultivations in late rainy season, and reproduced throughout the year. Finally, M. erythroleucus was more abundant in forest in dry season, and seemed to reproduce from late rainy to dry season. This species had a low occurrence (6.5%) in the Faranah's zone, and probably lived at its southern limit in Guinea. The presence of other Murinae, such as M. natalensis, Praomys spp as possible competitors in the same habitats, is discussed. For the first time, this study relates population biology of pygmy mice with molecular identification. Résumé Dans le cadre d'une vaste étude des réservoirs de la fièvre de Lassa en Guinée, trois villages ont étéétudiés dans une zone de forte endémie près de la frontière de la Sierra Leone. La biodiversité de la communauté de petits mammifères est présentée dans cette étude grâce à un piégeage standardisé dans les maisons, les cultures et les forêts. L'identification des petits mammifères est réalisée sur la base de leur morphologie et de techniques moléculaires dans le cas d'espèces jumelles. Parmi les 1123 spécimens récoltés de 2003 à 2005, nous avons identifié dix-sept espèces (treize Muridae, quatre Soricidae), indiquant une grande diversité (Indice de Shannon = 1,6 à 1,8) et une grande équitabilité (indice d'équitabilité = 0,7 à 0,8) dans les cultures et les forêts. Dans les maisons en revanche, la communauté de rongeurs était dominée par Mastomys natalensis (95 à 98%), conduisant à une faible diversité et équitabilité. La dynamique et la reproduction de deux espèces de souris naines, Mus mattheyi et M. minutoides, deux espèces de Praomys, P. daltoni et P. rostratus, et de Mastomys erythroleucus ont étéétudiées également. Les souris naines étaient abondantes dans les cultures au début de la saison des pluies, se reproduisant de la saison des pluies à la saison sèche. Praomys daltoni fut aussi trouvé en plus grand nombre dans les cultures et semblait se reproduire entre la saison des pluies et la saison sèche alors que P. rostratus préférait les forêts et les cultures à la fin de la saison des pluies et se reproduisait toute l'année. Enfin, M. erythroleucusétait plus abondant en forêt en saison sèche et semblait se reproduire de la fin de la saison des pluies à la saison sèche. Cette espèce était peu présente (6,5%) dans la zone de Faranah et était probablement en Guinée à la limite sud de son aire de répartition. La présence d'autres Murinae, comme M. natalensis et Praomys spp. est discutée en tant que compétiteurs possibles dans les même habitats. Pour la première fois, cette étude relate la biologie des populations de souris naines grâce à une identification moléculaire. [source] Pre-dispersal predation of Taraxacum officinale (dandelion) seedJOURNAL OF ECOLOGY, Issue 2 2005ALOIS HONEK Summary 1Pre-dispersal predation of seeds of Asteraceae has been studied in species where ripening seed is present on plants for long periods but rarely in those where seed maturation is ephemeral and density of consumers is therefore unlikely to keep pace with changes in seed availability. 2We therefore followed predation of dandelion (Taraxacum officinale) seeds by the larvae of Glocianus punctiger and Olibrus bicolor and predicted that both abundance of seed consumers and seed damage will be indirectly proportional to inflorescence availability, and that overall seed damage will be less than in species with longer lived inflorescences. 3We counted the number of dandelion capitula m,2, number of larvae capitulum,1 and percentage of damaged seeds at 10 sites, where the flowering time and densities of dandelions differed. The counts were made in 2002 and 2003, at half-weekly (April,May) or weekly (June,August) intervals. 4Abundance of both species of consumer varied among dandelion patches, and with change in availability of dandelion capitula. Numbers of larvae capitulum,1 were high early and late, when few capitula were available, but decreased at the time of peak flowering when there were many capitula. Production of ready-to-pupate larvae m,2 of a species at a site was similar in successive years, but values for O. bicolor and G. punctiger were not correlated. 5Seed damage paralleled the abundance of consumer larvae, with early and late flowers suffering most. A linear relationship correcting for lost seeds, predicted 30% damage when there were five larvae capitulum,1, below levels reported for species of Asteraceae with persistent inflorescences. 6The intensity of pre-dispersal seed predation is directly proportional to the abundance of seed consumer species and indirectly proportional to the availability of maturing capitula. Consequently, in species with ephemeral, synchronized flowering, where seed is available for only a short time, the majority of plants lose only a small proportion to predators. Although those flowering earlier or later than the peak will suffer a much higher risk, the low overall level of damage is unlikely to influence population biology. [source] Post-dispersal predation of Taraxacum officinale (dandelion) seedJOURNAL OF ECOLOGY, Issue 2 2005ALOIS HONEK Summary 1The importance of predation in determining the fate of post-dispersal dandelion (Taraxacum officinale) seed was investigated. Flowering, seed dispersal, seedling establishment, seed predation and seed predator abundance were recorded in 2002 and 2003, at two sites. Number of flowers were counted in 1-m2 plots, wind-borne seeds were collected in water traps, invertebrate seed predation was estimated from the rate of removal of dandelion seeds exposed on the ground and invertebrate activity density was determined by using pitfall traps. The censuses were made at 2- to 3-day intervals. 2Seed dispersal occurred 10 days after flowering. Although some seeds were blown away, 3.7,24.2 × 103 seeds m,2 fell to the ground. Four weeks after the peak in seed dispersal 0.7,3.1% of these seeds germinated. Three weeks later only 11,13% of the dispersed seed remained on the ground and most of these were damaged, the remainder presumably having been removed by predators. 3Predation of exposed seeds was low before seed dispersal but increased after its onset, in parallel with increases in the number of seeds present on the ground and in the activity density of adults of a seed-consuming carabid, Amara montivaga. 4In cafeteria experiments in which the seeds of 28 perennial and annual herbs were provided A. montivaga consumed the most dandelion seeds, followed by nine other Amara species. In no-choice experiments, under field conditions, A. montivaga consumed six seeds day,1. 5Post-dispersal predation, mainly due to aggregation of a single ground beetle species, was more important than that which occurred prior to dispersal. Although predators destroyed c. 97% of the seeds, the effect on dandelion population biology is likely to be small. 6Post-dispersal seed predation may nevertheless be important in other species, as aggregates of large invertebrate predators can consume large quantities of seed. [source] Three-dimensional reconstruction and neural map of the serotonergic brain of Asplanchna brightwellii (Rotifera, Monogononta)JOURNAL OF MORPHOLOGY, Issue 4 2009Rick Hochberg Abstract The basic organization of the rotifer brain has been known for nearly a century; yet, fine details on its structure and organization remain limited despite the importance of rotifers in studies of evolution and population biology. To gain insight into the structure of the rotifer brain, and provide a foundation for future neurophysiologic and neurophylogenetic research, the brain of Asplanchna brightwellii was studied with immunohistochemistry, confocal laser scanning microscopy, and computer modeling. A three-dimensional map of serotonergic connections reveals a complex network of approximately 28 mostly unipolar, cerebral perikarya and associated neurites. Cells and their projections display symmetry in quantity, size, connections, and pathways between cerebral hemispheres within and among individuals. Most immunopositive cells are distributed close to the brain midline. Three pairs of neurites form decussations at the brain midline and may innervate sensory receptors in the corona. A single neuronal pathway appears to connect both the lateral horns and dorsolateral apical receptors, suggesting that convergence of synaptic connections may be common in the afferent sensory systems of rotifers. Results show that the neural map of A. brightwellii is much more intricate than that of other monogonont rotifers; nevertheless, the consistency in neural circuits provides opportunities to identify homologous neurons, distinguish functional regions based on neurotransmitter phenotype, and explore new avenues of neurophylogeny in Rotifera. J. Morphol. 2009. © 2008 Wiley-Liss, Inc. [source] Regional patch dynamics of Cirsium arvense and possible implications for plant-animal interactionsJOURNAL OF VEGETATION SCIENCE, Issue 2 2003S. Eber Abstract. Plant population biology considers the dynamics of plant modules within stands. However, stands themselves may have considerable regional turnover in space and time. These changes in the number, distribution and size of plant stands generate a dynamic spatial pattern with important implications for the spatial and temporal dynamics of phytophagous insects using these plants as a host. During five successive years we studied the regional distribution and patch dynamics of the creeping thistle Cirsium arvense and the distribution of associated populations of the herbivore Urophora cardui (Diptera: Tephritidae), a specialist stem gall former. The study conducted was in a 15 km2 heterogeneous, agricultural area in northeastern Bavaria. The distribution of the number of plants per patch was skewed with many more small C. arvense patches than large ones. During the five years of study, there was a 50% increase in the number of C. arvense patches, and a decrease in the mean number of plants per patch (= patch size) to less than half the patch size of the first year. Whilst patch size was randomly distributed in space, patch density showed a consistent, non-random spatial pattern. Patch density was spatially auto-correlated, with areas of high or low patch density having a characteristic dimension of ca. 1 km. Patch size was predictable in time and appeared to be regulated by size dependent processes, with the extinction probability of a patch being negatively correlated with its size. Correlated with the decline of C. arvense patch size during the study, the occupancy and total numbers of the herbivore U. cardui had a marked decrease, suggesting that the regional distribution of the stem gall former is not only influenced by patch number but more importantly by the mean patch size. With decreasing patch sizes, U. cardui was faced with an increasingly dynamic landscape due to higher extinction rates of small patches, although the mean distance between host plant patches decreased. [source] Fine-scale genetic structure and inferences on population biology in the threatened Mediterranean red coral, Corallium rubrumMOLECULAR ECOLOGY, Issue 19 2010J.-B. LEDOUX Abstract Identifying microevolutionary processes acting in populations of marine species with larval dispersal is a challenging but crucial task because of its conservation implications. In this context, recent improvements in the study of spatial genetic structure (SGS) are particularly promising because they allow accurate insights into the demographic and evolutionary processes at stake. Using an exhaustive sampling and a combination of image processing and population genetics, we highlighted significant SGS between colonies of Corallium rubrum over an area of half a square metre, which sheds light on a number of aspects of its population biology. Based on this SGS, we found the mean dispersal range within sites to be between 22.6 and 32.1 cm, suggesting that the surveyed area approximately corresponded to a breeding unit. We then conducted a kinship analysis, which revealed a complex half-sib family structure and allowed us to quantify the level of self-recruitment and to characterize aspects of the mating system of this species. Furthermore, significant temporal variations in allele frequencies were observed, suggesting low genetic drift. These results have important conservation implications for the red coral and further our understanding of the microevolutionary processes acting within populations of sessile marine species with a larval phase. [source] High intercontinental migration rates and population admixture in the sapstain fungus Ophiostoma ipsMOLECULAR ECOLOGY, Issue 1 2007XUDONG ZHOU Abstract Ophiostoma ips is a common fungal associate of various conifer-infesting bark beetles in their native ranges and has been introduced into non-native pine plantations in the Southern Hemisphere. In this study, we used 10 microsatellite markers to investigate the population biology of O. ips in native (Cuba, France, Morocco and USA) and non-native (Australia, Chile and South Africa) areas to characterize host specificity, reproductive behaviour, and the potential origin as well as patterns of spread of the fungus and its insect vectors. The markers resolved a total of 41 alleles and 75 haplotypes. Higher genetic diversity was found in the native populations than in the introduced populations. Based on the origin of the insect vectors, the populations of O. ips in Australia would be expected to reflect a North American origin, and those in Chile and South Africa to reflect a European origin. However, most alleles observed in the native European population were also found in the native North American population; only the allele frequencies among the populations varied. This admixture made it impossible to confirm the origin of the introduced Southern Hemisphere (SH) populations of O. ips. There was also no evidence for specificity of the fungus to particular bark beetle vectors or hosts. Although O. ips is thought to be mainly self-fertilizing, evidence for recombination was found in the four native populations surveyed. The higher genetic diversity in the North American than in the European population suggests that North America could be the possible source region of O. ips. [source] Parentage versus two-generation analyses for estimating pollen-mediated gene flow in plant populationsMOLECULAR ECOLOGY, Issue 8 2005JAROSLAW BURCZYK Abstract Assessment of contemporary pollen-mediated gene flow in plants is important for various aspects of plant population biology, genetic conservation and breeding. Here, through simulations we compare the two alternative approaches for measuring pollen-mediated gene flow: (i) the neighborhood model , a representative of parentage analyses, and (ii) the recently developed twogener analysis of pollen pool structure. We investigate their properties in estimating the effective number of pollen parents (Nep) and the mean pollen dispersal distance (,). We demonstrate that both methods provide very congruent estimates of Nep and ,, when the methods' assumptions considering the shape of pollen dispersal curve and the mating system follow those used in data simulations, although the neighborhood model exhibits generally lower variances of the estimates. The violations of the assumptions, especially increased selfing or long-distance pollen dispersal, affect the two methods to a different degree; however, they are still capable to provide comparable estimates of Nep. The neighborhood model inherently allows to estimate both self-fertilization and outcrossing due to the long-distance pollen dispersal; however, the twogener method is particularly sensitive to inflated selfing levels, which in turn may confound and suppress the effects of distant pollen movement. As a solution we demonstrate that in case of twogener it is possible to extract the fraction of intraclass correlation that results from outcrossing only, which seems to be very relevant for measuring pollen-mediated gene flow. The two approaches differ in estimation precision and experimental efforts but they seem to be complementary depending on the main research focus and type of a population studied. [source] Isolation by distance and sharp discontinuities in gene frequencies: implications for the phylogeography of an alpine insect species, Carabus solieriMOLECULAR ECOLOGY, Issue 7 2004S. GARNIER Abstract Analysis of genetic isolation by distance (IBD) is of prime importance for the study of processes responsible for spatial population genetic structure and is thus frequently used in case studies. However, the identification of a significant IBD pattern does not necessarily imply the absence of sharp discontinuities in gene frequencies. Therefore, identifying barriers to gene flow and/or secondary contact between differentiated entities remains a major challenge in population biology. Geographical genetic structure of 41 populations (1080 individuals) of an alpine insect species, Carabus solieri, was studied using 10 microsatellite loci. All populations were significantly differentiated and spatially structured according to IBD over the entire range. However, clustering analyses clearly identified three main clusters of populations, which correspond to geographical entities. Whereas IBD also occurs within each cluster, population structure was different according to which group of populations was considered. The southernmost cluster corresponds to the most fragmented part of the range. Consistently, it was characterized by relatively high levels of differentiation associated with low genetic diversity, and the slope of the regression of genetic differentiation against geographical distances was threefold those of the two other clusters. Comparisons of within-cluster and between-cluster IBD patterns revealed barriers to gene flow. A comparison of the two approaches, IBD and clustering analyses, provided us with valuable information with which to infer the phylogeography of the species, and in particular to propose postglacial colonization routes from two potential refugia located in Italy and in southeastern France. Our study highlights strongly the possible confounding contribution of barriers to gene flow to IBD pattern and emphasizes the utility of the model-based clustering analysis to identify such barriers. [source] Fine-scale population structure and dispersal in Biomphalaria glabrata, the intermediate snail host of Schistosoma mansoni, in VenezuelaMOLECULAR ECOLOGY, Issue 5 2002J. Mavárez Abstract Biomphalaria glabrata is the main intermediate host of Schistosoma mansoni in America and one of the most intensely studied species of freshwater snails, yet very little is known about its population biology. Here, we used seven highly polymorphic microsatellite loci to analyse genetic diversity in the Valencia lake basin, which represents the core of the endemic area for schistosomiasis in Venezuela. Populations were sampled at short spatial scale (a few kilometres), both inside the lake and in ponds or rivers near the lake. Our results indicate that B. glabrata essentially cross-fertilizes, with little variation in selfing rates among populations. Our markers detected considerable genetic variation, with an average heterozygosity of 0.60. More diversity per population was found within than outside the lake, suggesting an influence of connectivity among populations on the levels of genetic diversity. A marked population structure was detected and lake populations were less structured than other populations. Most individuals were assigned to their population of origin using an assignment test. No strong demographic signal (e.g. bottleneck) was detected, though lake populations are likely to experience bottlenecks more frequently than the other populations analysed. Differences in gene flow therefore seem to play an important role in population differentiation and in the restoring of genetic diversity in demographically unstable populations. [source] Polymorphic population genetic markers for the Australian wood cockroach Panesthia australisMOLECULAR ECOLOGY RESOURCES, Issue 3 2006D. RUNCIMAN Abstract Primers for five polymorphic nuclear DNA (nDNA) markers and one mitochondrial DNA (mtDNA) gene (COI) were developed for the Australian wood cockroach Panesthia australis using a range of techniques. Eight mitochondrial haplotypes and four to 36 alleles per nuclear locus were detected in 744 cockroaches. Observed heterozygosity ranged from 0.117 to 0.816 in a sample of 30 animals from one population. The markers will be useful for population biology and for the measurement of the effects of habitat fragmentation on this ecologically important forest-dependent species. [source] | ||||||||||||||||||||||||||||||||||