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Plant Genotype (plant + genotype)
Selected AbstractsBehaviours of Medicago truncatula,Sinorhizobium meliloti Symbioses Under Osmotic Stress in Relation with the Symbiotic Partner Input: Effects on Nodule Functioning and ProtectionJOURNAL OF AGRONOMY AND CROP SCIENCE, Issue 3 2009H. Mhadhbi Abstract Three genotypes of the model legume Medicago truncatula were assessed for symbiotic effectiveness in cross inoculation with two strains of Sinorhizobium meliloti under mannitol-mediated osmotic stress. Symbioses showed different tolerance levels revealed on plant growth, nitrogen-fixing capacity and indices of nodule functioning and protection. The variability of stress response was essentially correlated with performance at non-stressful conditions. Symbiosis attitude depended on bacterial partner, host-plant genotype and their interaction. Plant genotype manifested the highest contribution to symbiotic efficiency indices under osmotic stress, even for nodulation and nitrogen fixation where the bacterial strain effect is highly pronounced. Contrasting (tolerant/sensitive) associations were identified for tolerance behaviours, involving the same plant genotype with different rhizobial strains and vice versa. In nodules, osmotic stress leads to accumulation of oxidized lipids and decrease in total protein and leghaemoglobin contents. Antioxidant responses were manifested as induction of guaiacol peroxidase (POX, E.C. 1.11.1.7) and superoxide dismutase (E.C. 1.15.1.1). POX induction was higher in tolerant symbioses and both enzymes were suggested as contributors to the protection of nodule integrity and functioning under osmotic stress. In conclusion, symbiotic efficiency in M. truncatula,S. meliloti combinations under osmotic stress is determined by each symbiont's input as well as the plant,microbe genotype interaction, and POX induction could prove a sensitive marker of tolerant symbioses. [source] Inferring colonization history from analyses of spatial genetic structure within populations of Pinus strobus and Quercus rubraMOLECULAR ECOLOGY, Issue 3 2006F. A. JONES Abstract Many factors interact to determine genetic structure within populations including adult density, the mating system, colonization history, natural selection, and the mechanism and spatial patterns of gene dispersal. We examined spatial genetic structure within colonizing populations of Quercus rubra seedlings and Pinus strobus juveniles and adults in an aspen,white pine forest in northern Michigan, USA. A 20-year spatially explicit demographic study of the forest enables us to interpret the results in light of recent colonization of the site for both species. We assayed 217 Q. rubra seedlings and 171 P. strobus individuals at 11 polymorphic loci using nine allozyme systems. Plant genotypes and locations were used in an analysis of spatial genetic structure. Q. rubra and P. strobus showed similar observed levels of heterozygosity, but Q. rubra seedlings have less heterozygosity than expected. Q. rubra seedlings show spatial genetic clumping of individuals on a scale to 25 m and levels of genetic relatedness expected from the clumped dispersion of half-siblings. In contrast, P. strobus has low levels of genetic relatedness at the smallest distance class and positive spatial genetic structure at scales < 10 m within the plot. The low density of adult Q. rubra outside the study plot and limited, spatially clumped rodent dispersal of acorns is likely responsible for the observed pattern of spatial genetic structure and the observed heterozygote deficit (i.e. a Wahlund effect). We attribute weaker patterns observed in P. strobus to the longer dispersal distance of seeds and the historical overlap of seed shadows from adults outside of the plot coupled with the overlap of seed shadows from younger, more recently established reproductive adults. The study demonstrates the utility of long-term demographic data in interpreting mechanisms responsible for generating contemporary patterns of genetic structure within populations. [source] The influence of host plant variation and intraspecific competition on oviposition preference and offspring performance in the host races of Eurosta solidaginisECOLOGICAL ENTOMOLOGY, Issue 1 2000Timothy P. Craig Summary 1. A series of experiments was conducted to measure the impact of plant genotype, plant growth rate, and intraspecific competition on the oviposition preference and offspring performance of the host races of Eurosta solidaginis (Diptera: Tephritidae), a fly that forms galls on Solidago altissima and Solidago gigantea (Asteraceae). Previous research has shown that both host races prefer to oviposit on their own host plant where survival is much higher than on the alternate host plant. In this study, neither host race showed any relationship between oviposition preference and offspring performance in choosing among plants of their natal host species. 2. The larval survival of both host races differed among plant genotypes when each host race oviposited on its natal host species. In one experiment, altissima host race females showed a preference among plant genotypes that was not correlated with offspring performance on those genotypes. In all other experiments, neither the altissima nor gigantea host race demonstrated a preference for specific host plant genotypes. 3. Eurosta solidaginis had a preference for ovipositing on rapidly growing ramets in all experiments, however larval survival was not correlated with ramet growth rate at the time of oviposition. 4. Eurosta solidaginis suffered high mortality from intraspecific competition in the early larval stage. There was little evidence, however, that females avoided ovipositing on ramets that had been attacked previously. This led to an aggregated distribution of eggs among ramets and strong intraspecific competition. 5. There was no interaction among plant genotype, plant growth rate, or intraspecific competition in determining oviposition preference or offspring performance. [source] Importance of species interactions to community heritability: a genetic basis to trophic-level interactionsECOLOGY LETTERS, Issue 1 2006Joseph K. Bailey Abstract Recent community genetics studies have shown that specific genotypes of a host plant support distinct arthropod communities. Building upon these findings, we examined the hypothesis that a trophic community consisting of cottonwood trees, a galling herbivore and avian predators could also be related to the genetics of the host tree. We found genetic correlations among phytochemistry of individual tree genotypes, the density of a galling herbivore, and the intensity of avian predation on these herbivores. We detected significant broad-sense heritability of these interactions that range from H = 0.70 to 0.83. The genetic basis of these interactions tended to increase across trophic levels suggesting that small genetic changes in the cottonwood phenotype could have major consequences at higher trophic levels affecting species interactions and energy flow. These findings show a heritable basis to trophic-level interactions indicating that there is a significant genetic basis to community composition and energy flow that is predictable by plant genotype. Our data clearly link plant genetics to patterns of avian foraging and show that species interactions are important components of community heritability and ecosystem processes. Overall, these data support the hypothesis that evolution of plant traits can alter trophic-level interactions and community composition. [source] Effect of N-fertilization, plant genotype and environmental conditions on nifH gene pools in roots of riceENVIRONMENTAL MICROBIOLOGY, Issue 10 2003Zhiyuan Tan Summary Terminal restriction fragment length polymorphism (T-RFLP) analysis of PCR-amplified nitrogenase gene (nifH) fragments is a rapid technique for profiling of diazotrophic microbial communities without the necessity of cultures for study. Here, we examined the impact of N-fertilization, plant genotype and environmental conditions on diazotrophic microbial populations in association with roots of rice (Oryza species) by T-RFLP community profiling and found marked effects on the composition of the microbial community. We found a rapid change of the diazotrophic population structure within 15 days after application of nitrogen fertilizer and a strong effect of environmental conditions and plant genotype. Control experiments revealed that phylogenetically distantly related nifH genes were proportionately amplified, and that signal strength reflected the relative abundance of nifH genes in the sample within a 10-fold range of template concentrations. These results clearly demonstrated that our T-RFLP method was suitable to reflect compositional differences in the diazotrophic community in a semiquantitative manner and that the diazotrophic rhizosphere communities of rice are not static but presumably rather highly dynamic. [source] Soil microbial community structure in cucumber rhizosphere of different resistance cultivars to fusarium wiltFEMS MICROBIOLOGY ECOLOGY, Issue 3 2010Huaiying Yao Abstract Cucumber fusarium wilt is a common soil-borne disease. We hypothesize that there is a relationship between the severity of disease and soil microbial ecology. In this work, culturable microbial populations, lipid fatty acid and community-level physiological profiles (CLPP) from rhizosphere soils of four different cucumber cultivars were investigated. Comparatively higher actinomycetes, mycorrhizal colonization and higher ratios of bacteria to fungi were found in the two resistant cultivars compared with the two susceptible cultivars. CLPP analysis showed that catabolic diversity indices were higher in the presence of two resistant cultivars. Phospholipid fatty acid (PLFA) profiles suggested that fungal (18:2,6,9c) PLFA was enriched in the rhizosphere soils of the two susceptible cultivars, but some bacterial (16:0 and 15:0a) PLFAs were found in a lower relative abundance in these soils. The neutral lipid fatty acid 16:1,5, which is an indicator of arbuscular mycorrhizal fungi, was enriched in the rhizosphere soils of the two resistant cultivars. All the three methods suggested that plant genotype had a significant impact on the soil microbial community composition and activity, and the differences in the rhizosphere microbial community may result in the differences in the resistance to fusarium wilt. [source] Soil parent material is a key determinant of the bacterial community structure in arable soilsFEMS MICROBIOLOGY ECOLOGY, Issue 3 2006Andreas Ulrich Abstract The bacterial community composition in soil and rhizosphere taken from arable field sites, differing in soil parent material and soil texture, was analyzed using terminal restriction fragment length polymorphism (T-RFLP) of 16S rRNA genes. Nine sandy to silty soils from North-East Germany could clearly be distinguished from each other, with a relatively low heterogeneity in the community structure within the field replicates. There was a relationship between the soil parent material, i.e. different glacial and aeolian sediments, and the clustering of the profiles from different sites. A site-specific grouping of T-RFLP profiles was also found for the rhizosphere samples of the same field sites that were planted with potatoes. The branching of the rhizosphere profiles corresponded partly with the soil parent material, whereas the effect of the plant genotype was negligible. Selected terminal restriction fragments differing in their relative abundance within the nine soils were analyzed based on the cloning of the 16S rRNA genes of one soil sample. A high phylogenetic diversity observed to include Acidobacteria, Betaproteobacteria, Bacteroidetes, Verrucomicrobia, and Gemmatimonadetes. The assignment of three out of the seven selected terminal restriction fragments to members of Acidobacteria suggested that this group seems to participate frequently in the shifting of community structures that result from soil property changes. [source] Behaviours of Medicago truncatula,Sinorhizobium meliloti Symbioses Under Osmotic Stress in Relation with the Symbiotic Partner Input: Effects on Nodule Functioning and ProtectionJOURNAL OF AGRONOMY AND CROP SCIENCE, Issue 3 2009H. Mhadhbi Abstract Three genotypes of the model legume Medicago truncatula were assessed for symbiotic effectiveness in cross inoculation with two strains of Sinorhizobium meliloti under mannitol-mediated osmotic stress. Symbioses showed different tolerance levels revealed on plant growth, nitrogen-fixing capacity and indices of nodule functioning and protection. The variability of stress response was essentially correlated with performance at non-stressful conditions. Symbiosis attitude depended on bacterial partner, host-plant genotype and their interaction. Plant genotype manifested the highest contribution to symbiotic efficiency indices under osmotic stress, even for nodulation and nitrogen fixation where the bacterial strain effect is highly pronounced. Contrasting (tolerant/sensitive) associations were identified for tolerance behaviours, involving the same plant genotype with different rhizobial strains and vice versa. In nodules, osmotic stress leads to accumulation of oxidized lipids and decrease in total protein and leghaemoglobin contents. Antioxidant responses were manifested as induction of guaiacol peroxidase (POX, E.C. 1.11.1.7) and superoxide dismutase (E.C. 1.15.1.1). POX induction was higher in tolerant symbioses and both enzymes were suggested as contributors to the protection of nodule integrity and functioning under osmotic stress. In conclusion, symbiotic efficiency in M. truncatula,S. meliloti combinations under osmotic stress is determined by each symbiont's input as well as the plant,microbe genotype interaction, and POX induction could prove a sensitive marker of tolerant symbioses. [source] Phyllosphere microbiology with special reference to diversity and plant genotypeJOURNAL OF APPLIED MICROBIOLOGY, Issue 6 2008J.M. Whipps Summary The phyllosphere represents the habitat provided by the aboveground parts of plants, and on a global scale supports a large and complex microbial community. Microbial interactions in the phyllosphere can affect the fitness of plants in natural communities, the productivity of agricultural crops, and the safety of horticultural produce for human consumption. The structure of phyllosphere communities reflects immigration, survival and growth of microbial colonists, which is influenced by numerous environmental factors in addition to leaf physico-chemical properties. The recent use of culture-independent techniques has demonstrated considerable previously unrecognized diversity in phyllosphere bacterial communities. Furthermore, there is significant recent evidence that plant genotype can play a major role in determining the structure of phyllosphere microbial communities. The main aims of this review are: (i) to discuss the diversity of phyllosphere microbial populations; (ii) to consider the processes by which microbes colonize the phyllosphere; (iii) to address the leaf characteristics and environmental factors that determine the survival and growth of colonists; (iv) to discuss microbial adaptations that allow establishment in the phyllosphere habitat and (v) to evaluate evidence for plant genotypic control of phyllosphere communities. Finally, we suggest approaches and priority areas for future research on phyllosphere microbiology. [source] Environment and host-plant genotype effects on the seasonal dynamics of a predatory mite on cassava in sub-humid tropical AfricaAGRICULTURAL AND FOREST ENTOMOLOGY, Issue 3 2009Christine Zundel Abstract 1,In tropical dry seasons, survival of small arthropods such as predatory mites is often negatively affected by low relative humidity (RH). For species that do not diapause or migrate to refuges, the ability of the habitat to mitigate climatic conditions becomes crucial. 2,The relative effect of macro-habitat (dry grassland hill, humid multiple cropping area, humid riparian forest) and microhabitat (host-plant genotypes with hairy, semi-hairy and glabrous apices) on the seasonal dynamics of the phytoseiid mite Typhlodromalus aripo, a predator of Mononychellus tanajoa on cassava, was examined in a field experiment during a dry season. The effect of RH and plant genotype on T. aripo egg survival was determined in an environment control chamber. 3,Predator abundance was higher in humid multiple cropping areas and on hairy cassava compared with the other habitat types and cassava genotypes. 4,Discriminant and regression analyses showed that the predator's dry season persistence was related to high RH, high plant vigour and hairy apices, but not to prey abundance. 5,In the controlled climate experiment, the effect of host-plant morphology was evident only at the intermediate RH level of 55%. An effect of apex hairiness was not found. 6,It is concluded that the effect of genotype on T. aripo persistence diminishes under low RH conditions, and that supportive effects of apex hairs become effective only in the field, probably through protection from wind and/or intraguild predation. Humid multiple cropping areas planted with hairy and vigorous cassava genotypes are suitable dry season reservoirs for T. aripo. [source] Within and between population genetic variation for zinc accumulation in Arabidopsis halleriNEW PHYTOLOGIST, Issue 1 2002Mark R. Macnair Summary ,,Hyperaccumulator plants in the field show significant variation in the metal concentration in their aerial parts, but little is known of the causes of this variation. This paper investigates the role of soil zinc (Zn) concentration and genetic variation in causing between and within population variation in Zn accumulation in Arabidopsis halleri. ,,Seed from 17 populations of A. halleri collected in central Europe were grown under standard conditions at three external Zn concentrations and tested for Zn concentration in the leaves. ,,Between population variation was highest at low external zinc concentrations. At 10 µm Zn some plants had very low leaf Zn concentrations, and were indistinguishable from nonaccumulators. However, at higher Zn concentrations, all plants showed hyperaccumulation. There were no differences in the accumulating abilities of populations from sites with different degrees of contamination. ,,Heritability of accumulation, determined for individual families from three populations, was quite high (25,50%), indicating that selection for increased accumulating ability should be possible, although selection would be easier at low external Zn concentrations. The Zn concentration of field collected plants was affected partly by plant genotype but not by the total soil Zn around their roots. [source] The interaction of plant genotype and herbivory decelerate leaf litter decomposition and alter nutrient dynamicsOIKOS, Issue 1 2005Jennifer A. Schweitzer We examined how plant genetic variation and a common herbivore (the leaf-galling aphid, Pemphigus betae) influenced leaf litter quality, decomposition, and nutrient dynamics in a dominant riparian tree (Populus spp.). Based on both observational studies and a herbivore exclusion experiment using trees of known genotype, we found four major patterns: 1) the quality of galled vs non-galled or gall-excluded litter significantly differed in the concentration of condensed tannins, lignin, nitrogen and phosphorus; 2) the difference in litter quality resulted in galled litter decomposing at rates 34 to 40% slower than non-galled litter; 3) plant genotype and herbivory had similar effects on the magnitude of decomposition rate constants; and 4) plant genotype mediated the herbivore effects on leaf litter quality and decomposition, as there were genotype-specific responses to herbivory independent of herbivore density. In contrast to other studies that have demonstrated accelerated ecosystem properties in response to arthropod herbivory, our findings argue that herbivore-induced secondary compounds decelerated ecosystem properties though their "after-life" effects on litter quality. Furthermore, these data are among the first to suggest that genotype-specific responses to herbivores can have a major impact on decomposition and nutrient flux, which likely has important consequences for the spatial distribution of nutrients at the landscape level. Due to the magnitude of these effects, we contend that it is important to incorporate a genetic perspective into ecosystem studies. [source] A systematic approach to biological control agent exploration and prioritisation for prickly acacia (Acacia nilotica ssp. indica)AUSTRALIAN JOURNAL OF ENTOMOLOGY, Issue 4 2006K Dhileepan Abstract, Agent selection for prickly acacia has been largely dictated by logistics and host specificity. Given that detailed ecological information is available on this species in Australia, we propose that it is possible to select agents based on agent efficacy and desired impact on prickly acacia demography. We propose to use the ,plant genotype' and ,climatic' similarities as filters to identify areas for future agent exploration; and plant response to herbivory and field host range as ,predictive' filters for agent prioritisation. Adopting such a systematic method that incorporates knowledge from plant population ecology and plant,herbivore interactions makes agent selection decisions explicit and allow more rigorous evaluations of agent performance and better understanding of success and failure of agents in weed biological control. [source] The influence of host plant variation and intraspecific competition on oviposition preference and offspring performance in the host races of Eurosta solidaginisECOLOGICAL ENTOMOLOGY, Issue 1 2000Timothy P. Craig Summary 1. A series of experiments was conducted to measure the impact of plant genotype, plant growth rate, and intraspecific competition on the oviposition preference and offspring performance of the host races of Eurosta solidaginis (Diptera: Tephritidae), a fly that forms galls on Solidago altissima and Solidago gigantea (Asteraceae). Previous research has shown that both host races prefer to oviposit on their own host plant where survival is much higher than on the alternate host plant. In this study, neither host race showed any relationship between oviposition preference and offspring performance in choosing among plants of their natal host species. 2. The larval survival of both host races differed among plant genotypes when each host race oviposited on its natal host species. In one experiment, altissima host race females showed a preference among plant genotypes that was not correlated with offspring performance on those genotypes. In all other experiments, neither the altissima nor gigantea host race demonstrated a preference for specific host plant genotypes. 3. Eurosta solidaginis had a preference for ovipositing on rapidly growing ramets in all experiments, however larval survival was not correlated with ramet growth rate at the time of oviposition. 4. Eurosta solidaginis suffered high mortality from intraspecific competition in the early larval stage. There was little evidence, however, that females avoided ovipositing on ramets that had been attacked previously. This led to an aggregated distribution of eggs among ramets and strong intraspecific competition. 5. There was no interaction among plant genotype, plant growth rate, or intraspecific competition in determining oviposition preference or offspring performance. [source] ON QUANTIFYING TOLERANCE OF HERBIVORY FOR COMPARATIVE ANALYSESEVOLUTION, Issue 9 2008Michael J. Wise As the evolutionary importance of plant tolerance of herbivory is increasingly appreciated, more and more studies are not just measuring a plant's tolerance, but are comparing tolerance among plant genotypes, populations, species, and environments. Here, we suggest that caution must be taken in such comparative studies in the choice of measurement scales (and data transformations) for damage levels and plant performance. We demonstrate with a simple scenario of two plant groups of equal tolerance how the choice of scales can lead one to infer that the first group is more tolerant, the second group is more tolerant, or the two groups are equally tolerant,using the identical dataset. We conclude that to make reliable, logically consistent inferences when comparing tolerances among groups of plants, damage and performance should both be on an additive scale or both on a multiplicative scale. [source] Effect of genetic variance in plant quality on the population dynamics of a herbivorous insectJOURNAL OF ANIMAL ECOLOGY, Issue 4 2009Nora Underwood Summary 1Species diversity can affect many ecological processes; much less is known about the importance of population genetic diversity, particularly for the population dynamics of associated species. Genetic diversity within a host species can create habitat diversity; when associated species move among hosts, this variation could affect populations additively (an effect of average habitat) or non-additively (an effect of habitat variance). Mathematical theory suggests that non-additive effects of variance among patches should influence population size, but this theory has not been tested. 2This prediction was tested in the field by asking whether aphid population dynamics parameters on strawberry plant genotype mixtures were additive or non-additive functions of parameters on individual plant genotypes in monoculture using model fitting. 3Results show that variance in quality among plant genotypes can have non-additive effects on aphid populations, and that the form of this effect depends on the particular plant genotypes involved. 4Genetic variation among plants also influenced the spatial distribution of aphids within plant populations, but the number of plant genotypes per population did not affect aphid populations. 5These results suggest that predicting the behaviour of populations in heterogeneous environments can require knowledge of both average habitat quality and variance in quality. [source] Genetic differentiation analysis of African cassava (Manihot esculenta) landraces and elite germplasm using amplified fragment length polymorphism and simple sequence repeat markersANNALS OF APPLIED BIOLOGY, Issue 2 2009A.A.J. Raji Abstract Molecular-marker-aided evaluation of germplasm plays an important role in defining the genetic diversity of plant genotypes for genetic and population improvement studies. A collection of African cassava landraces and elite cultivars was analysed for genetic diversity using 20 amplified fragment length polymorphic (AFLP) DNA primer combinations and 50 simple sequence repeat (SSR) markers. Within-population diversity estimates obtained with both markers were correlated, showing little variation in their fixation index. The amount of within-population variation was higher for landraces as illustrated by both markers, allowing discrimination among accessions along their geographical origins, with some overlap indicating the pattern of germplasm movement between countries. Elite cultivars were grouped in most cases in agreement with their pedigree and showed a narrow genetic variation. Both SSR and AFLP markers showed some similarity in results for the landraces, although SSR provided better genetic differentiation estimates. Genetic differentiation (Fst) in the landrace population was 0.746 for SSR and 0.656 for AFLP. The molecular variance among cultivars in both populations accounted for up to 83% of the overall variation, while 17% was found within populations. Gene diversity (He) estimated within each population varied with an average value of 0.607 for the landraces and 0.594 for the elite lines. Analyses of SSR data using ordination techniques identified additional cluster groups not detected by AFLP and also captured maximum variation within and between both populations. Our results indicate the importance of SSR and AFLP as efficient markers for the analysis of genetic diversity and population structure in cassava. Genetic differentiation analysis of the evaluated populations provides high prospects for identifying diverse parental combinations for the development of segregating populations for genetic studies and the introgression of desirable genes from diverse sources into the existing genetic base. [source] | ||||||||||||||||||||||||||||