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Phylogenetic Perspective (phylogenetic + perspective)
Selected AbstractsThe evolution of electroreception and bioelectrogenesis in teleost fish: a phylogenetic perspectiveJOURNAL OF FISH BIOLOGY, Issue 6 2001J. A. Alves-Gomes According to current phylogenetic theory, both electroreceptors and electric organs evolved multiple times throughout the evolution of teleosts. Two basic types of electroreceptors have been described: ampullary and tuberous electroreceptors. Ampullary-type electroreceptors appeared once in the common ancestor of the Siluriformes+Gymnotiformes (within the superorder Ostariophysi), and on two other occasions within the superorder Osteoglossomorpha: in the African Mormyriformes and in the African Notopteriformes. Tuberous receptors are assumed to have evolved three times; all within groups that already possessed ampullary receptors. With the exception of a single catfish species, for which studies are still lacking, all fish with tuberous electroreceptors also have an electric organ. Tuberous electroreceptors are found in the two unrelated electrogenic teleost lineages (orders Gymnotiformes and Mormyriformes) and in one non-electrogenic South American catfish species (order Siluriformes). Electric organs evolved eight times independently among teleosts: five of them among the ostariophysans (once in the gymnotiform ancestor and in four siluriform lineages), once in the common ancestor of Mormyriformes, and in two uranoscopids. With the exception of two uranoscopid genera, for which no electroreceptive capabilities have been discovered so far, all electric organs evolved as an extension of a pre-existing electroreceptive (ampullary) condition. It is suggested that plesiomorphic electric organ discharges (EODs) possessed a frequency spectrum that fully transgressed the tuning curve of ampullary receptors, i.e. a signal such as a long lasting monophasic pulse. Complex EOD waveforms appeared as a derived condition among electric fish. EODs are under constant evolutionary pressure to develop an ideal compromise between a function that enhances electrolocation and electrocommunication capabilities, and thereby ensures species identity through sexual and behavioural segregation, and minimizes the risk of predation. [source] Evolution and implications of genome rearrangements in ciliatesTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 2 2005LAURA A. KATZ We are exploring genome evolution in diverse ciliates to assess whether patterns of protein evolution correspond to the presence of genome duality, and to levels of genome rearrangements among ciliates. Ciliate genomes contain an estimated 25,000,35,000 genes, a number higher than that of other characterized microbial eukaryotes and on a similar scale to that of humans and Arabidopsis thaliana. We have previously hypothesized that the divergence among ciliate proteins, and the accumulation of paralogs within ciliate taxa, is due to differential selection on the functional macronucleus and the transcriptionally inactive micronucleus. To assess this hypothesis, we are expanding our analyses of protein-coding gene sequences to compare the fate of proteins in ciliates to that of other eukaryotes, and to test whether the most divergent ciliate proteins are found in ciliates with extensively processed genomes. These analyses, combined with a phylogenetic perspective that reveals multiple origins of extensive fragmentation in ciliates, provide a possible explanation for the large genome size and diversity of proteins in ciliates. [source] Revisiting the concept of lineage in prokaryotes: a phylogenetic perspectiveBIOESSAYS, Issue 5 2009Yan Boucher Abstract Mutation and lateral transfer are two categories of processes generating genetic diversity in prokaryotic genomes. Their relative importance varies between lineages, yet both are complementary rather than independent, separable evolutionary forces. The replication process inevitably merges together their effects on the genome. We develop the concept of "open lineages" to characterize evolutionary lineages that over time accumulate more changes in their genomes by lateral transfer than by mutation. They contrast with "closed lineages," in which most of the changes are caused by mutation. Open and closed lineages are interspersed along the branches of any tree of prokaryotes. This patchy distribution conflicts with the basic assumptions of traditional phylogenetic approaches. As a result, a tree representation including both open and closed lineages is a misrepresentation. The evolution of all prokaryotic lineages cannot be studied under a single model unless new phylogenetic approaches that are more pluralistic about lineage evolution are designed. [source] Evolution of the cercal sensory system in a tropical cricket clade (Orthoptera: Grylloidea: Eneopterinae): a phylogenetic approachBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2010LAURE DESUTTER-GRANDCOLAS The diversity of sensory systems in animals has poorly been explored on a phylogenetic basis at the species level. We addressed this issue using cricket cerci, comprising abdominal appendages covered with touch- and air-sensitive hairs. Scanning electron microscopy measurements and spatial analyses of hair positioning were used to quantify the structural diversity of cercal structures. Eighteen Eneopterinae and two Gryllidae (outgroups) were studied from a phylogenetic perspective. Cerci were revealed to be complex, diverse, and variable between cricket species. Based on maximum likelihood estimations, the ancestral Eneopterinae cercus had a small size, and its hair equipment allowed the use of both air and touch mechanoreception. The evolution of Eneopterinae cerci was mainly unconstrained by the phylogeny; it was rather a punctuated process, involving apical transformations, and was mostly unrelated to environmental patterns. All studied species have enhanced their overall perceptive capacities compared to the ancestor. Most have longer cerci with more and/or longer hairs. Sensory abilities have improved either in the direction of touch or air movement detection, or both, without discarding the potential for any sensory capacity that was already present ancestrally. This pattern is consistent with the hypothesis of an evolutionary trade-off for sensory performances. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99, 614,631. [source] Phylogenetic analysis of the endemic New Caledonian cockroach Lauraesilpha.CLADISTICS, Issue 5 2008Testing competing hypotheses of diversification New Caledonia is a tropical hotspot of biodiversity with high rates of regional and local endemism. Despite offering an ideal setting to study the evolution of endemism, New Caledonia has received little attention compared with the other nearby hotspots, particularly New Zealand. Most studies of the Neocaledonian endemism have been carried out at the regional level, comparing the various groups and species present in New Caledonia but absent in neighboring territories. In addition, remarkably high short-range endemism has been documented among plants, lizard and invertebrates, although these have usually been done, lacking a phylogenetic perspective. Most studies of Neocaledonian endemism have referred to the geological Gondwanan antiquity of the island and its metalliferous soils derived from ultramafic rocks. Very old clades are thought to have been maintained in refugia and diversified on the metalliferous soils. The present study documents the pattern of diversification and establishment of short-range endemism in a phylogenetic context using the Neocaledonian cockroach genus Lauraesilpha. Mitochondrial and nuclear genes were sequenced to reconstruct phylogenetic relationships among the species of this genus. These relationships, in the light of the species distribution, do not support the hypothesis that species diversified via an adaptive radiation on metalliferous soils and are not consistent with areas of highest rainfall. Species of Lauraesilpha have similar altitudinal ranges and ecological habits and are short-range endemics on mountains. What our analysis did reveal was that closely related species are found on nearby or contiguous mountains, and thus these formations probably played the key role establishing short-range endemism (in association with recent climatic changes). © The Willi Hennig Society 2008. [source] | ||||||||||