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Ordination Methods (ordination + methods)
Selected AbstractsIs the matrix a sea?ECOLOGICAL ENTOMOLOGY, Issue 1 2005Habitat specificity in a naturally fragmented landscape Abstract., 1. Metapopulation and island biogeography theory assume that landscapes consist of habitat patches set in a matrix of non-habitat. If only a small proportion of species conform to the patch,matrix assumptions then metapopulation theory may only describe special cases rather than being of more general ecological importance. 2. As an initial step towards understanding the prevalence of metapopulation dynamics in a naturally fragmented landscape, the distribution of beetle species in three replicates of three habitat types was examined, including rainforest and eucalypt forest (the habitat patches), and buttongrass sedgeland (the matrix), in south-west Tasmania, Australia. 3. Ordination methods indicated that the buttongrass fauna was extremely divergent from the fauna of forested habitats. Permutation tests showed that the abundance of 13 of 17 commonly captured species varied significantly among habitats, with eight species confined to eucalypts or rainforest, and three species found only in buttongrass. Approximately 60% of species were confined to forested habitat implying that metapopulation theory has the potential to be very important in the forest,buttongrass landscape. 4. Although floristically the rainforest and eucalypts were extremely distinct, the beetle faunas from eucalypts and rainforests overlapped substantially. Therefore rainforest patches connected by eucalypt forest represent continuous habitat for most species. 5. Other studies report a wide range of values for the proportion of patch-specific species in fragmented landscapes. Understanding the environmental or historical conditions under which a high proportion of species become patch specialists would help to identify where spatial dynamic theory may be especially applicable, and where habitat loss and fragmentation poses the greatest threat to biodiversity. [source] Secondary old-field succession in an ecosystem with restrictive soils: does time from abandonment matter?APPLIED VEGETATION SCIENCE, Issue 2 2010E. Martínez-Duro Abstract Question: Our knowledge of secondary old-field succession in Mediterranean environments is extremely poor and is non-existent for restrictive soil conditions. How these ecosystems, such as those on semi-arid gypsum outcrops, recover seems a priority for managing change and for ensuring conservation of specialized and endangered biota. We tested whether reinstallation of gypsum vegetation after cropland abandonment requires: (1) soil physical restructuring and (2) chemical readjustment to enable growth and survival of specialized gypsophilous vegetation, and more specifically how time from abandonment drives such environmental change. Location: We sampled a complete set of old fields on gypsum soils (1,60 yr since abandonment) in Villarrubia de Santiago (Toledo, Spain). Methods: Generalized linear models and model comparisons were used to analyse the effect of several environmental parameters on species abundance and richness. Ordination methods (canonical correspondence analyses and partial canonical correspondence analyses) were undertaken to evaluate compositional variation among the sampled fields. Results: Secondary old-field succession on semi-arid Mediterranean gypsum soils was controlled by a complex set of factors acting relatively independently. Surprisingly, time since abandonment explains only a small proportion of compositional variation (3%). Conversely, soil chemical features independently from time since abandonment are important for explaining differences found in old-field composition. Conclusions: Secondary succession on specialized Mediterranean soils does not follow the widely described "amelioration" process in which soil features and composition are closely related over time. Restrictive soil conditions control both structure and functioning of mature communities and also secondary succession. [source] Changes in fish assemblages in catchments in north-eastern Spain: biodiversity, conservation status and introduced speciesFRESHWATER BIOLOGY, Issue 8 2010ALBERTO MACEDA-VEIGA Summary 1. North-eastern Spain is a hot spot for the introduction of alien fish species, and its native fish fauna is one of the most endangered worldwide. We used an extensive data set from 2002 to 2003 and historical information from the area to characterize fish diversity and establish conservation priorities in river catchments. 2. Diversity indices were used to characterize fish diversity at the basin scale. An index of conservation status was applied for each species, which considers the occurrence, abundance and endemicity of each taxon. We used indirect ordination methods to test the relationship among basin features and to identify those variables most correlated with each other. To identify physical, biotic and environmental characteristics that seem to make a basin particularly susceptible to invasion, we performed a step-wise multiple regression to examine the relationship between the number of native, translocated and introduced fish species (including the original native species richness of each basin), and landscape variables. 3. Over a period of approximately 50 years, the mean range size of native fish species has decreased by 60%. The greatest decline occurred in Gasterosteus gymnurus, Anguilla anguilla and Salaria fluviatilis, for which species over 75% of the original distribution area has been lost. The species with the highest conservation index were Gasterosteus gymnurus and Salaria fluviatilis. 4. Basin area and the catchment type explained 70% of variation in native species richness, whereas the number of dams and basin area accounted for more than 80% of variation in the number of introduced species. 5. The original native species richness and the number of introduced species at basin scale were not related, and thus there was no evidence of "biotic resistance" to invasion. The restoration of natural hydrologic processes and the development of specific management tools to protect native species, such as the prioritization of areas for fish conservation and the eradication of local populations of exotic species, are required to restore native fish fauna in these catchments. [source] The inselberg flora of Atlantic Central Africa.JOURNAL OF BIOGEOGRAPHY, Issue 4 2005Abstract Aims, To identify the relative contributions of environmental determinism, dispersal limitation and historical factors in the spatial structure of the floristic data of inselbergs at the local and regional scales, and to test if the extent of species spatial aggregation is related to dispersal abilities. Location, Rain forest inselbergs of Equatorial Guinea, northern Gabon and southern Cameroon (western central Africa). Methods, We use phytosociological relevés and herbarium collections obtained from 27 inselbergs using a stratified sampling scheme considering six plant formations. Data analysis focused on Rubiaceae, Orchidaceae, Melastomataceae, Poaceae, Commelinaceae, Acanthaceae, Begoniaceae and Pteridophytes. Data were investigated using ordination methods (detrended correspondence analysis, DCA; canonical correspondence analysis, CCA), Sřrensen's coefficient of similarity and spatial autocorrelation statistics. Comparisons were made at the local and regional scales using ordinations of life-form spectra and ordinations of species data. Results, At the local scale, the forest-inselberg ecotone is the main gradient structuring the floristic data. At the regional scale, this is still the main gradient in the ordination of life-form spectra, but other factors become predominant in analyses of species assemblages. CCA identified three environmental variables explaining a significant part of the variation in floristic data. Spatial autocorrelation analyses showed that both the flora and the environmental factors are spatially autocorrelated: the similarity of species compositions within plant formations decreasing approximately linearly with the logarithm of the spatial distance. The extent of species distribution was correlated with their a priori dispersal abilities as assessed by their diaspore types. Main conclusions, At a local scale, species composition is best explained by a continuous cline of edaphic conditions along the forest-inselberg ecotone, generating a wide array of ecological niches. At a regional scale, these ecological niches are occupied by different species depending on the available local species pool. These subregional species pools probably result from varying environmental conditions, dispersal limitation and the history of past vegetation changes due to climatic fluctuations. [source] What determines emergence and net recruitment in an early succession plant community?JOURNAL OF VEGETATION SCIENCE, Issue 4 2008Disentangling biotic, abiotic effects Abstract Question: How do different regeneration scenarios shape species composition at two stages of plant community establishment (emergence and net recruitment) in an early succession? Location: Northern Spain. Methods: In a recently ploughed field, we created eight regeneration scenarios with light, water and nitrogen availability (five replicates each). Seedlings of all species were monitored from emergence to death during one year. Abiotic and biotic variables were measured per quadrat, i.e. soil texture, nutrient contents, seed bank densities and composition, neighbour plant species densitiy and cover. We used partial ordination methods in order to separate the effect of each environmental variable on species composition during emergence and adult net recruitment. Results: Light treatment determined annual plant density at time of emergence and recruitment, while water addition controlled the recruitment of perennials. Resource levels explained the emerged species composition; this effect was not translated into the recruited species composition. N-addition and N + water addition were strongly associated to species abundances at the time of emergence. Seedling composition in summer was correlated with seed abundance of Cerastium spp. Neighbour species density and cover (mainly Arrhenatherum bulbosum, Agropyron repens and Picris echioides) explained significant fractions of species composition in the emergence and recruitment of the different cohorts. Interactions between species seem to vary in intensity among cohorts and in the key plant species that determined species abundance along succession. Conclusions: Our scenarios exerted contrasting and multilevel effects on the development of our early succession community. Resource availability differently affected plant density and species composition at different life stages. It is relevant to consider different life stages in plant community studies. However, regeneration conditions and other abiotic factors are not enough to explain how community composition varies. [source] Spontaneous recovery of an intensively used grassland after cessation of fertilizingAPPLIED VEGETATION SCIENCE, Issue 4 2009Josef Královec Abstract Questions: (1) Does a fertilized grassland recover in terms of species composition and species richness after stopping the treatment? (2) Which species contributed most to the changes? (3) Is it realistic to rely upon spontaneous recovery in this and similar cases? Location: A large grassland, located in the western part of the Czech Republic in central Europe, latitude 49° 59,, longitude 12° 45,, altitude 750 m a.s.l. Methods: Experimental plots of 2.5 m × 6.0 m were established in the central part of the grassland in 1968 using a randomized block design with the following variants: unfertilized controls, 80, 160, 240 and 320 kg ha,1 of nitrogen, in four or eight (320 kg) replicates. The fertilization regime was stopped in 1989. Phytosociological relevés of 2 m × 4 m in size were made in 1990, 1994, 1996, 1997, 1999, 2003 and 2006. The data were processed by multivariate ordination methods (DCA, CCA). Differences in the number of species per plot were tested by repeated measures anova and Tukey's HSD test. Results: All plots, including controls, exhibited a distinct trajectory through time, reflecting the rates of fertilizer used and generally changing in the same direction. Both time and nutrients significantly influenced the vegetation pattern. Treatments differed significantly in species richness, especially at the beginning of the observation. Differences in later years were less pronounced, thus a convergence between the treatments was evident. Conclusions: During the 16 years after fertilization ceased, the number of species substantially increased not only in the fertilized plots but also in the controls. Species typical of semi-natural grasslands predominantly contributed to the increase. Spontaneous recovery after cessation of fertilizing was relatively efficient, but the fertilized plots were small in size and thus rather easily colonized from outside. For interpretation and extrapolation of results from small experimental plots, it is necessary to consider changes in the broader surroundings. [source] Predictability of early stages of primary succession in post-mining landscapes of Lower Lusatia, GermanyAPPLIED VEGETATION SCIENCE, Issue 1 2001Gerhard Wiegleb Abstract. The predictability of early primary succession in post-mining landscapes of eastern Germany was studied at sites 5,70 yr following dumping. This chronosequence was investigated using indirect ordination methods. The position of the vegetation types in the ordination diagram was found not to infer any temporal sequence. Independent observations show that the change of vegetation type is slow and does not necessarily occur among types adjacent in the ordination diagram. Furthermore, direct ordination revealed that environmental parameters such as pH, the levels of available phosphate and organic carbon as well as the age of the study sites do not significantly account for the variance. Instead, attention needs to be paid to the influence of spatial aspects and also what recultivation measures have been carried out. A detailed account of the vegetation dynamics of individual sample plots showed - depending on the respective vegetation type - divergence, convergence, and fluctuation at the smallest spatial scale. While the species richness of the sample plots remained more or less constant after initial colonization, mean vegetation cover continuously increases with age, although some sites still remain free of vegetation after as long as 70 yr. No general trend in dominant life forms was indicated. A conceptual model of early succession mechanisms is outlined and five basic mechanisms are identified (i.e. site availability, site suitability, availability of diaspores, strategies of colonizing species and biotic interactions). Their respective importance in three different stages of early succession is estimated and compared. The predictability of vegetation dynamics at each stage is rated differently. [source] | |||||||||||||