Home About us Contact
|
Home About us Contact | ||
|
|
||
One Trait (one + trait)
Selected AbstractsPigment pattern formation in zebrafish: A model for developmental genetics and the evolution of formMICROSCOPY RESEARCH AND TECHNIQUE, Issue 6 2002Ian K. Quigley The zebrafish Danio rerio is an emerging model organism for understanding vertebrate development and genetics. One trait of both historical and recent interest is the pattern formed by neural crest,derived pigment cells, or chromatophores, which include black melanophores, yellow xanthophores, and iridescent iridophores. In zebrafish, an embryonic and early larval pigment pattern consists of several stripes of melanophores and iridophores, whereas xanthophores are scattered widely over the flank. During metamorphosis, however, this pattern is transformed into that of the adult, which comprises several dark stripes of melanophores and iridophores that alternate with light stripes of xanthophores and iridophores. In this review, we place zebrafish relative to other model and non-model species; we review what is known about the processes of chromatophore specification, differentiation, and morphogenesis during the development of embryonic and adult pigment patterns, and we address how future studies of zebrafish will likely aid our understanding of human disease and the evolution of form. Microsc. Res. Tech. 58:442,455, 2002. © 2002 Wiley-Liss, Inc. [source] Tooth size and skin thickness in mature sockeye salmon: evidence for habitat constraints and variable investment between the sexesECOLOGY OF FRESHWATER FISH, Issue 3 2006S. P. Johnson Abstract ,, Pacific salmon develop many sexually dimorphic features at maturity, and the extent of development varies among populations. In this study, we compared a suite of traits including body length, body depth, jaw length, tooth size and skin mass in male and female sockeye salmon breeding in beach and creek habitats. Both tooth size and skin mass varied positively with body length. Within each of the breeding habitats, males had longer teeth than females, and within each sex, beach spawners had longer teeth than creek spawners. Males also had heavier skin than females in each habitat but, unlike the case with tooth size, creek spawners showed a much stronger relationship between skin mass and body length than did beach spawners. Tooth length was positively related to jaw length and skin mass among individuals within a given sex and habitat. Taken together, these results suggested that variation in tooth size parallels variation in other sexually dimorphic traits. Males and beach spawners tend to exhibit large trait values relative to females and creek spawners, and ,well-endowed' individuals displayed high values of all traits rather than a trade-off as might occur if investment in one trait compromised investment in others. However, the finding that creek fish tended to have thicker skin for a given body length than did beach fish suggested that factors other than merely defense against conspecifics during battle, such as abrasion and desiccation resistance in small streams, may influence the evolution of skin mass in mature sockeye salmon. [source] The effects of fragmentation on fluctuating asymmetry in passerine birds of Brazilian tropical forestsJOURNAL OF APPLIED ECOLOGY, Issue 6 2000M. Anciães Summary 1. ,Fluctuating asymmetry (FA) refers to the difference between the right and left sides in characters that should otherwise be bilaterally symmetrical, but whose expression is affected by epigenetic stress during development. Forest fragmentation may promote an increase in FA in isolated populations, by either genetic or environmental stress. FA may function as a biomonitor index in conservation biology if increased levels were observed in populations from fragmented habitats. 2. ,We tested the hypothesis that FA is higher in birds from small tropical forest patches than in large forest tracts. We measured wing and tarsus FA on mist-netted birds from seven fragments and seven continuous areas from south-eastern Atlantic rain forest in Brazil. We performed FA comparisons between fragments and control groups for the whole community, for individual foraging guilds and for the six most abundant species. 3. ,Wing and tarsus FA were significantly greater in fragments than continuous areas for the whole community and were both negatively correlated with forest fragment size. Differences in FA varied among foraging guilds, being more evident for insectivorous species, especially those feeding in or near the understorey. 4. ,FA levels increased significantly in forest fragments in at least one trait for five of the six most abundant species. There was no correlation between tarsus and wing asymmetries for the individuals of any species nor any difference between the degree of asymmetries of these characters. 5. ,We suggest that FA is a useful tool to assess the effects of fragmentation on forest birds, and may be applied in monitoring neotropical birds. FA indices might be profitably developed, particularly in species most threatened by fragmentation effects and when investigated in different morphological characters. [source] Multidimensional Linking for Tests with Mixed Item TypesJOURNAL OF EDUCATIONAL MEASUREMENT, Issue 2 2009Lihua Yao Numerous assessments contain a mixture of multiple choice (MC) and constructed response (CR) item types and many have been found to measure more than one trait. Thus, there is a need for multidimensional dichotomous and polytomous item response theory (IRT) modeling solutions, including multidimensional linking software. For example, multidimensional item response theory (MIRT) may have a promising future in subscale score proficiency estimation, leading toward a more diagnostic orientation, which requires the linking of these subscale scores across different forms and populations. Several multidimensional linking studies can be found in the literature; however, none have used a combination of MC and CR item types. Thus, this research explores multidimensional linking accuracy for tests composed of both MC and CR items using a matching test characteristic/response function approach. The two-dimensional simulation study presented here used real data-derived parameters from a large-scale statewide assessment with two subscale scores for diagnostic profiling purposes, under varying conditions of anchor set lengths (6, 8, 16, 32, 60), across 10 population distributions, with a mixture of simple versus complex structured items, using a sample size of 3,000. It was found that for a well chosen anchor set, the parameters recovered well after equating across all populations, even for anchor sets composed of as few as six items. [source] Comparison of quantitative and molecular genetic variation of native vs. invasive populations of purple loosestrife (Lythrum salicaria L., Lythraceae)MOLECULAR ECOLOGY, Issue 14 2009YOUNG JIN CHUN Abstract Study of adaptive evolutionary changes in populations of invasive species can be advanced through the joint application of quantitative and population genetic methods. Using purple loosestrife as a model system, we investigated the relative roles of natural selection, genetic drift and gene flow in the invasive process by contrasting phenotypical and neutral genetic differentiation among native European and invasive North American populations (QST , FST analysis). Our results indicate that invasive and native populations harbour comparable levels of amplified fragment length polymorphism variation, a pattern consistent with multiple independent introductions from a diverse European gene pool. However, it was observed that the genetic variation reduced during subsequent invasion, perhaps by founder effects and genetic drift. Comparison of genetically based quantitative trait differentiation (QST) with its expectation under neutrality (FST) revealed no evidence of disruptive selection (QST > FST) or stabilizing selection (QST < FST). One exception was found for only one trait (the number of stems) showing significant sign of stabilizing selection across all populations. This suggests that there are difficulties in distinguishing the effects of nonadaptive population processes and natural selection. Multiple introductions of purple loosestrife may have created a genetic mixture from diverse source populations and increased population genetic diversity, but its link to the adaptive differentiation of invasive North American populations needs further research. [source] Architectural and growth traits differ in effects on performance of clonal plants: an analysis using a field-parameterized simulation modelOIKOS, Issue 5 2007Radka Wildová Individual traits are often assumed to be linked in a straightforward manner to plant performance and processes such as population growth, competition and community dynamics. However, because no trait functions in isolation in an organism, the effect of any one trait is likely to be at least somewhat contingent on other trait values. Thus, to the extent that the suite of trait values differs among species, the magnitude and even direction of correlation between values of any particular trait and performance is likely to differ among species. Working with a group of clonal plant species, we assessed the degree of this contingency and therefore the extent to which the assumption of simple and general linkages between traits and performance is valid. To do this, we parameterized a highly calibrated, spatially explicit, individual-based model of clonal plant population dynamics and then manipulated one trait at a time in the context of realistic values of other traits for each species. The model includes traits describing growth, resource allocation, response to competition, as well as architectural traits that determine spatial spread. The model was parameterized from a short-term (3 month) experiment and then validated with a separate, longer term (two year) experiment for six clonal wetland sedges, Carex lasiocarpa, Carex sterilis, Carex stricta, Cladium mariscoides, Scirpus acutus and Scirpus americanus. These plants all co-occur in fens in southeastern Michigan and represent a spectrum of clonal growth forms from strong clumpers to runners with long rhizomes. Varying growth, allocation and competition traits produced the largest and most uniform responses in population growth among species, while variation in architectural traits produced responses that were smaller and more variable among species. This is likely due to the fact that growth and competition traits directly affect mean ramet size and number of ramets, which are direct components of population biomass. In contrast, architectural and allocation traits determine spatial distribution of biomass; in the long run, this also affects population size, but its net effect is more likely to be mediated by other traits. Such differences in how traits affect plant performance are likely to have implications for interspecific interactions and community structure, as well as on the interpretation and usefulness of single trait optimality models. [source] Molecular marker analysis of kernel size and shape in bread wheatPLANT BREEDING, Issue 5 2003B. B. Dholakia Abstract The economic value of wheat grain is determined by the kernel morphology which is an important parameter for manufacturing different food products requiring specific grain characteristics. Although kernel size and shape have emerged as important breeding objectives, not much information is available about the number or location of associated gene(s)/quantitative trait loci. In the present study, a recombinant inbred line population of 106 plants (F7) was phenotyped for four traits, namely kernel length, width, weight and factor form density (FFD) and genotyped with different polymerase chain reaction-based markers. Transgressive segregants were observed for all the traits and genetic correlation studies showed positive correlations between the majority of the traits. The number of markers associated with each trait ranged from two to nine and the phenotypic contribution by an individual marker ranged from 3.3 to 16.6%. Many of the markers showed linkage to more than one trait. Strategies for improving the wheat grain quality traits and the utility of such markers in marker-assisted selection (MAS) efforts are discussed. [source] | ||||||||||