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Oxidation Activity (oxidation + activity)
Selected AbstractsThe role of the nitrate respiration element of Thermus thermophilus in the control and activity of the denitrification apparatusENVIRONMENTAL MICROBIOLOGY, Issue 2 2008Felipe Cava Summary The nitrate conjugative element (NCE) encodes the ability to respire nitrate in the facultative Thermus thermophilus NAR1 strain. This process is carried out by two heterotetrameric enzymes that catalyse the oxidation of NADH (Nrc) and the reduction of nitrate (Nar), whose expression is activated by the NCE-encoded transcription factors DnrS and DnrT. We report the presence of NCE in other facultative strains of T. thermophilus and analyse its role in subsequent steps of the denitrification pathway. We encountered that nrc mutants of denitrifying strains show a decrease in anaerobic growth rates not only with nitrate, but also with nitrite, NO and N2O, which is concomitant to their lower NADH oxidation activities in vitro. We show that nitrate, nitrite and NO are activating signals for transcription of nrc in these strains. Finally, we demonstrate that DnrS and DnrT are required for anaerobic growth not only with nitrate, but also with nitrite, NO and N2O. These data allow us to conclude that: (i) Nrc constitutes the main electron donor for the four reductases of the denitrification pathway, and (ii) the NCE controls the expression of the whole denitrification pathway and the repression of the aerobic respiration through the transcription factors DnrS and DnrT. [source] Activity and diversity of methanotrophs in the soil,water interface and rhizospheric soil from a flooded temperate rice fieldJOURNAL OF APPLIED MICROBIOLOGY, Issue 1 2009L. Ferrando Abstract Aims:, To combine molecular and cultivation techniques to characterize the methanotrophic community in the soil,water interface (SWI) and rhizospheric soil from flooded rice fields in Uruguay, a temperate region in South America. Methods and Results:, A novel type I, related to the genus Methylococcus, and three type II methanotrophs were isolated from the highest positive dilution steps from the most probable number (MPN) counts. Potential methane oxidation activities measured in slurried samples were higher in the rhizospheric soil compared to the SWI and were stimulated by N-fertilization. PmoA (particulate methane monooxygenase) clone libraries were constructed for both rice microsites. SWI clones clustered in six groups related to cultivated and uncultivated members from different ecosystems of the genera Methylobacter, Methylomonas, Methylococcus and a novel type I sublineage while cultivation and T-RFLP (terminal restriction fragment length polymorphism) analysis confirmed the presence of type II methanotrophs. Conclusions:, Cultivation techniques, cloning analysis and T-RFLP fingerprinting of the pmoA gene revealed a diverse methanotrophic community in the rice rhizospheric soil and SWI. Significance and Impact of the Study:, This study reports, for the first time, the analysis of the methanotrophic diversity in rice SWI and this diversity may be exploited in reducing methane emissions. [source] Nitrite accumulation characteristics of high strength ammonia wastewater in an autotrophic nitrifying biofilm reactorJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 4 2003Ho-Joon Yun Abstract Selective nitrification was carried out to accumulate nitrite from high strength ammonia wastewater in an autotrophic nitrifying biofilm reactor. Nitrification efficiencies and nitrite accumulation characteristics were investigated at various operating conditions such as ammonium load, oxygen supply and free ammonia concentration. The biofilm reactor showed very stable nitrification efficiencies of more than 90% at up to 2,kg,NH4 -N,m,3,d,1 and the nitrite content was maintained at around 95%. Inhibition by free ammonia on nitrite oxidizers seems to be the major factor for nitrite accumulation. Batch kinetic analyses of ammonium and nitrite oxidation showed that nitrite oxidation activity was selectively inhibited in the presence of free ammonia. However, the activity recovered quickly as the free ammonia concentration decreased below the threshold inhibition concentration. Examination of specific ammonia and nitrite oxidation activities and the most probable number indicated that the number of nitrite-oxidizing microorganisms in the nitrite-accumulating system was less than that in the normal nitrification system due to long-term free ammonia inhibition of the nitrite oxidizers. The reduced population of nitrite oxidizers in the biofilm system was also responsible for the accumulation of nitrite in the biofilm reactor. © 2003 Society of Chemical Industry [source] Quantitative analysis of amoA mRNA expression as a new biomarker of ammonia oxidation activities in a complex microbial communityLETTERS IN APPLIED MICROBIOLOGY, Issue 6 2004Y. Aoi Abstract Aims:, To quantitatively analyse the changes to amoA mRNA (ammonia mono-oxygenase encoding mRNA) profiles in response to a change in ammonia oxidation activity in a complex microbial community. Methods and Results:, The amoA mRNA levels in both a batch-mode incubation and a continuously fed nitrification reactor were determined by real-time reverse transcription-PCR analysis. The amoA mRNA level changed rapidly in response to the change in environmental conditions which affect ammonia oxidation activity. Conclusion:, An increase in amoA mRNA level can be detected within 1,2 h in response to an initiation of cell activity whereas a decrease in amoA mRNA level is detected within 24 h in response to a cessation of activity. Significance and Impact of the Study:,amoA mRNA, which shows sensitive response to ammonia oxidation activity, can be used as a biomarker of ammonia oxidation activity in wastewater treatment processes where many bacterial species exist. [source] Protein engineering of Bacillus megaterium CYP102FEBS JOURNAL, Issue 10 2001The oxidation of polycyclic aromatic hydrocarbons Cytochrome P450 (CYP) enzymes are involved in activating the carcinogenicity of polycyclic aromatic hydrocarbons (PAHs) in mammals, but they are also utilized by microorganisms for the degradation of these hazardous environmental contaminants. Wild-type CYP102 (P450BM-3) from Bacillus megaterium has low activity for the oxidation of the PAHs phenanthrene, fluoranthene and pyrene. The double hydrophobic substitution R47L/Y51F at the entrance of the substrate access channel increased the PAH oxidation activity by up to 40-fold. Combining these mutations with the active site mutations F87A and A264G lead to order of magnitude increases in activity. Both these mutations increased the NADPH turnover rate, but the A264G mutation increased the coupling efficiency while the F87A mutation had dominant effects in product selectivity. Fast NADPH oxidation rates were observed (2250 min,1 for the R47L/Y51F/F87A mutant with phenanthrene) but the coupling efficiencies were relatively low (< 13%), resulting in a highest substrate oxidation rate of 110 min,1 for fluoranthene oxidation by the R47L/Y51F/A264G mutant. Mutation of M354 and L437 inside the substrate access channel reduced PAH oxidation activity. The PAHs were oxidized to a mixture of phenols and quinones. Notably mutants containing the A264G mutation showed some similarity to mammalian CYP enzymes in that some 9,10-phenanthrenequinone, the K -region oxidation product from phenanthrene, was formed. The results suggest that CYP102 mutants could be useful models for PAH oxidation by mammalian CYP enzymes, and also potentially for the preparation of novel PAH bioremediation systems. [source] Site-Selective Deposition of Metal Nanoparticles on Aligned WO3 Nanotrees for Super-Hydrophilic Thin FilmsADVANCED MATERIALS, Issue 13 2009Masachika Shibuya Highly aligned WO3 nanotrees are grown on metal tungsten by a simple hydrothermal reaction. Pd nanoparticles are selectively deposited on the WO3 nanotrees by a photocatalytic reduction reaction. Photocatalytic oxidation activity depends strongly on the position of the deposited Pd nanoparticles, and the WO3 nanotrees with Pd nanoparticles deposited at the bottom position exhibited efficient super-hydrophilicity. [source] Deposition of PtxRu1,x Catalysts for Methanol Oxidation in Micro Direct Methanol Fuel CellsISRAEL JOURNAL OF CHEMISTRY, Issue 3-4 2008William E. Mustain Platinum-ruthenium electrodes (PtxRu1-x) have been prepared by electrochemical and electroless deposition and investigated as catalysts for the oxidation of methanol in acidic solutions. PtxRu1-x deposits were electrochemically deposited from acidic chloride electrolytes at potentials between ,0.46 and 0.34 V (vs. NHE). The composition of the electrodeposit was estimated by energy dispersive X-ray spectroscopy and is a strong function of the electrode potential. An empirical model for the deposition process is presented and kinetic parameters are estimated and discussed. Also, the methanol oxidation activity of the PtxRu1-x catalysts was characterized by cyclic voltammetry in 1.0 M CH3OH, 1.0 M H2SO4 solutions. Electroless PtxRu1-x samples were prepared in a modified Leaman bath with hydrazine dihydrochloride as the reducing agent. The kinetic results for the electrochemical deposition of PtxRu1-x were directly applied and the deposition potential was estimated as approximately 0.40 V. [source] Nitrite accumulation characteristics of high strength ammonia wastewater in an autotrophic nitrifying biofilm reactorJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 4 2003Ho-Joon Yun Abstract Selective nitrification was carried out to accumulate nitrite from high strength ammonia wastewater in an autotrophic nitrifying biofilm reactor. Nitrification efficiencies and nitrite accumulation characteristics were investigated at various operating conditions such as ammonium load, oxygen supply and free ammonia concentration. The biofilm reactor showed very stable nitrification efficiencies of more than 90% at up to 2,kg,NH4 -N,m,3,d,1 and the nitrite content was maintained at around 95%. Inhibition by free ammonia on nitrite oxidizers seems to be the major factor for nitrite accumulation. Batch kinetic analyses of ammonium and nitrite oxidation showed that nitrite oxidation activity was selectively inhibited in the presence of free ammonia. However, the activity recovered quickly as the free ammonia concentration decreased below the threshold inhibition concentration. Examination of specific ammonia and nitrite oxidation activities and the most probable number indicated that the number of nitrite-oxidizing microorganisms in the nitrite-accumulating system was less than that in the normal nitrification system due to long-term free ammonia inhibition of the nitrite oxidizers. The reduced population of nitrite oxidizers in the biofilm system was also responsible for the accumulation of nitrite in the biofilm reactor. © 2003 Society of Chemical Industry [source] Quantitative analysis of amoA mRNA expression as a new biomarker of ammonia oxidation activities in a complex microbial communityLETTERS IN APPLIED MICROBIOLOGY, Issue 6 2004Y. Aoi Abstract Aims:, To quantitatively analyse the changes to amoA mRNA (ammonia mono-oxygenase encoding mRNA) profiles in response to a change in ammonia oxidation activity in a complex microbial community. Methods and Results:, The amoA mRNA levels in both a batch-mode incubation and a continuously fed nitrification reactor were determined by real-time reverse transcription-PCR analysis. The amoA mRNA level changed rapidly in response to the change in environmental conditions which affect ammonia oxidation activity. Conclusion:, An increase in amoA mRNA level can be detected within 1,2 h in response to an initiation of cell activity whereas a decrease in amoA mRNA level is detected within 24 h in response to a cessation of activity. Significance and Impact of the Study:,amoA mRNA, which shows sensitive response to ammonia oxidation activity, can be used as a biomarker of ammonia oxidation activity in wastewater treatment processes where many bacterial species exist. [source] Production, characterization and determination of the real catalytic properties of the putative ,succinate dehydrogenase' from Wolinella succinogenesMOLECULAR MICROBIOLOGY, Issue 5 2009Hanno D. Juhnke Summary Both the genomes of the epsilonproteobacteria Wolinella succinogenes and Campylobacter jejuni contain operons (sdhABE) that encode for so far uncharacterized enzyme complexes annotated as ,non-classical' succinate:quinone reductases (SQRs). However, the role of such an enzyme ostensibly involved in aerobic respiration in an anaerobic organism such as W. succinogenes has hitherto been unknown. We have established the first genetic system for the manipulation and production of a member of the non-classical succinate:quinone oxidoreductase family. Biochemical characterization of the W. succinogenes enzyme reveals that the putative SQR is in fact a novel methylmenaquinol:fumarate reductase (MFR) with no detectable succinate oxidation activity, clearly indicative of its involvement in anaerobic metabolism. We demonstrate that the hydrophilic subunits of the MFR complex are, in contrast to all other previously characterized members of the superfamily, exported into the periplasm via the twin-arginine translocation (tat)-pathway. Furthermore we show that a single amino acid exchange (Ala86,His) in the flavoprotein of that enzyme complex is the only additional requirement for the covalent binding of the otherwise non-covalently bound FAD. Our results provide an explanation for the previously published puzzling observation that the C. jejuni sdhABE operon is upregulated in an oxygen-limited environment as compared with microaerophilic laboratory conditions. [source] Dicer ablation in oligodendrocytes provokes neuronal impairment in mice,ANNALS OF NEUROLOGY, Issue 6 2009Daesung Shin PhD Objective MicroRNAs (miRNAs) regulate gene expression and have many roles in the brain, but a role in oligodendrocyte (OL) function has not been demonstrated. Methods A Dicer floxed conditional allele was crossed with the proteolipid protein promoter-driven inducible Cre allele to generate inducible, OL-specific Dicer -floxed mice. Results OL-specific Dicer mutants show demyelination, oxidative damage, inflammatory astrocytosis and microgliosis in the brain, and eventually neuronal degeneration and shorter lifespan. miR-219 and its target ELOVL7 (elongation of very long chain fatty acids protein 7) were identified as the main molecular components that are involved in the development of the phenotype in these mice. Overexpressing ELOVL7 results in lipid accumulation, which is suppressed by miR-219 co-overexpression. In Dicer mutant brain, excess lipids accumulate in myelin-rich brain regions, and the peroxisomal ,-oxidation activity is dramatically reduced. Interpretation Postnatal Dicer ablation in mature OLs results in inflammatory neuronal degeneration through increased demyelination, lipid accumulation, and peroxisomal and oxidative damage, and therefore indicates that miRNAs play an essential role in the maintenance of lipids and redox homeostasis in mature OLs that are necessary for supporting axonal integrity as well as the formation of compact myelin. Ann Neurol 2009;66:843,857 [source] Species differences in enantioselective 2-oxidations of RS-8359, a selective and reversible MAO-A inhibitor, and cinchona alkaloids by aldehyde oxidaseBIOPHARMACEUTICS AND DRUG DISPOSITION, Issue 3 2006Kunio Itoh Abstract The 2-oxidation activity on the pyrimidine ring of RS-8359, a MAO-A inhibitor, is the major metabolic pathway catalysed by aldehyde oxidase. This study investigated the species differences in the 2-oxidation activity by using liver cytosolic fractions from rats, mice, guinea-pigs, rabbits, dogs, monkeys and humans. The Vmax/Km value for the (S)-enantiomer of RS-8359 was extremely high in monkeys and humans, moderate in guinea-pigs, and low in rats and mice. Dogs were deficient in 2-oxidation activity. The (R)-enantiomer was only oxidized at a very low rate in guinea-pigs, monkeys and humans, and not oxidized in rats, mice and rabbits. Thus, marked species differences and enantioselectivity were obvious for the 2-oxidation of the (S)-enantiomer of RS-8359. The in vitro results were in good accordance with previously reported in vivo excretion data of the 2-keto metabolite and the non-detectable plasma concentrations of the (S)-enantiomer in monkeys and humans after administration of racemic RS-8359. Enantioselectivity was also observed for the oxidation of cinchona alkaloids catalysed by aldehyde oxidase. Among the four cinchona alkaloids studied, the oxidation activity of cinchonidine, which has no substituents at the 6-hydroxy group but bears (8S,9R)-configurations, was highest. As opposed to the (S)-enantiomer, an extremely high catalytic activity of cinchonidine was confirmed in rabbits, but not in monkeys or humans. Rabbit liver aldehyde oxidase was suggested to have characteristic properties around the active site. Copyright © 2006 John Wiley & Sons, Ltd. [source] Effect of Ionic Liquids on Catalytic Characteristics of Horse Liver Alcohol DehydrogenaseCHINESE JOURNAL OF CHEMISTRY, Issue 11 2006Xian-Ai Shi Abstract The catalytic characteristics of horse liver alcohol dehydrogenase (HLADH) in the systems involving ionic liquids (ILs) (BMIm·Cl, BMIm·Br, BMIm·PF6, BMIm·BF4 BMIm·OTf and EMIm·Cl) were examined. HLADH displayed higher oxidation activity towards ethanol in the systems containing BMIm·Cl, BMIm·Br, EMIm·Cl or BMIm·PF6 with proper content than that in the IL-free buffer. An excessive amount of these ILs in the reaction systems resulted in an obvious decline in enzymatic activity. BMIm·BF4 and BMIm·OTf of any content investigated could considerably inhibit the enzyme. The anions of ILs showed significant effect on the activity, kinetic parameters and activation energy of HLADH-mediated ethanol oxidation. Additionally, BMIm·Cl, BMIm·Br, EMIm·Cl and BMIm·PF6 boosted markedly the thermostability of HLADH, while the enzyme was less thermostable in BMIm·BF4 or BMIm·OTf-containing systems. The associated conformational changes in HLADH caused by ILs were examined by UV technique. [source] | ||||||||||||||||