Home About us Contact
|
Home About us Contact | ||
|
|
||
Null Model Analysis (null + model_analysis)
Selected AbstractsDoes disturbance affect the structure of tropical fish assemblages?JOURNAL OF FISH BIOLOGY, Issue 2 2007A test using null models Null model analyses on fish presence-absence data from tropical river assemblages of the Western Ghats, India, revealed a difference in the extent of randomness in species assemblage structure among impacted and unimpacted rivers in the region. [source] Is there limiting similarity in the phenology of fleshy fruits?JOURNAL OF VEGETATION SCIENCE, Issue 6 2005K.C. Burns Abstract Question: Is there evidence for limiting similarity in the timing of fruit production by a bird-dispersed plant community? Is the rate of fruit removal in each plant species inversely related to fruit availability in other species? Can simple measurements of fruit phenologies (i.e. temporal changes in fruit availability) obscure important fruit attributes that influence their removal by birds? Location: Vancouver Island, British Columbia, Canada. Methods: Periods of fruit availability were measured in ten woody angiosperm species for two years. In the second year, the fate of individual fruits was quantified to disentangle dates of fruit maturation, removal and mortality from measurements of availability. Results: Null model analyses of fruit availability distributions showed no evidence for limiting similarity. However, fruit removal rates of most plant species were correlated with their relative abundance in the community, indicating fruits were removed more rapidly when other fruits were less abundant. Species with similar periods of fruit availability often had different dates of fruit maturation, rates of fruit removal and fruit persistence times, indicating fruit availability measurements can obscure important bird-fruit interactions. Conclusions: Competition for dispersers appears to occur. However, it has not resulted in limiting similarity in fruit availability distributions. A likely explanation for this discrepancy is that fruit availability distributions often confound several important fruit attributes that can independently influence fruit removal by birds. [source] Determinants of assemblage structure in Neotropical dry forest lizardsAUSTRAL ECOLOGY, Issue 1 2009FERNANDA De PINHO WERNECK Abstract We investigated the structure of a lizard assemblage from Seasonally Dry Tropical Forest enclaves in the Brazilian Cerrado biome, by testing the roles of ecological and historical components. We analysed data from 469 individuals, belonging to 18 lizard species, sampled by a combination of pitfall, funnel and glue traps, as well as by haphazard sampling. Null model analyses and Canonical Phylogenetic Ordination analysis, coupled with Monte Carlo simulations, revealed lack of both ecological and phylogenetic structure in microhabitat use. Conversely, these analyses revealed a mean overlap in diet composition significantly smaller than expected by chance and significant historical structure. Structure in diet composition was due to phylogenetic effects corresponding to the most basal divergence of the squamate phylogeny (Iguania/Scleroglossa) and the clades Teiidae and Gymnophthalmidae. Among lizards, evolutionary constraints on microhabitat use appear less than on prey use, suggesting that the availability of historically preferred prey types moderates microhabitat selection. The lack of structure in microhabitat use suggests absence of competitive interactions on the spatial component. On the other hand, food preferences have a deep historical basis and do not reflect current competitive interactions. [source] Null model analysis of communities on gradientsJOURNAL OF BIOGEOGRAPHY, Issue 6 2004James G. Sanderson Abstract Aim, I employed a novel null model and metric to uncover unusual species co-occurrence patterns in a herpetofaunal assemblage of 49 species collected at discrete elevations along a gradient. Location, Mount Kupe, Cameroon. Methods, Using a construction algorithm that started from a matrix of 0s, a sample null space of 25,000 unique null matrices was generated by simultaneously conserving (1) the number of occurrences of each species, (2) site richness and (3) species range spans derived from the observed incidence matrix. I then compared the number of times each pair of confamilial species co-occurred in the null space with the same number derived from the observed incidence matrix. Two cases dealing with embedded absences in species ranges were tested: (1) embedded absences were maintained, and (2) embedded absences were assumed to be sampling omissions and were replaced by presences. Results, In the observed absence/presence assemblage there were 147 possible confamilial species pairs. Therefore, 5% or eight were expected by chance alone to have co-occurrence patterns that differed from chance expectations by chance alone. Of these confamilial species pairs, 38 were congeneric and so 5% or two were expected to differ from chance expectations. For case (1) 16, and for case (2) 17 confamilial species pairs' co-occurrence patterns differed significantly from chance expectations. For case (1) nine congeneric species pairs, and for case (2) 10 congeneric pairs differed significantly from chance expectations. For case (1) four, and for case (2) five congeneric species pairs formed checkerboards (patterns of mutual exclusion). Results from case (1) were a proper subset of case (2) indicating that sampling omissions did not alter greatly the results. Main conclusions, I have demonstrated that null models are valuable tools to analyse ecological communities provided that proper models are employed. The choice of the appropriate null space to analyse distributions is critical. The null model employed to analyse birds on islands of an archipelago can be adapted to analyse species along gradients provided an additional range constraint is added to the null model. Moreover, added precision to results can be obtained by analysing each species pair separately, particularly those in the same family or genus, as opposed to applying a community-wide metric to the faunal assemblage. My results support some of the speculations of previous authors who were unable to demonstrate their suspicions analytically. [source] Testing hypotheses about fecundity, body size and maternal condition in fishesFISH AND FISHERIES, Issue 2 2004Marten A. Koops Abstract Recent research suggests that maternal condition positively influences the number of eggs spawned in fishes. These studies commonly choose a priori to use body length rather than weight as an explanatory variable of offspring production, even though weight is usually the better predictor of fecundity. We are concerned that consistent exclusion of body weight as a predictor of egg production inflates the variance in fecundity attributable to maternal condition. By analysing data on three populations of Atlantic cod (Gadus morhua, Gadidae) and 10 populations of brook trout (Salvelinus fontinalis, Salmonidae), we illustrate the need for a statistically defensible method of model selection to distinguish the effects of maternal condition on egg production from the effects of body size alone. Forward stepwise regression and null model analyses reveal how length-based regressions can significantly over-estimate correlations between condition and fecundity, leading us to conclude that the effect of condition on egg productivity may not be as ubiquitous or as biologically important as previously thought. Our work underscores the need for greater statistical clarity in analyses of the effects of maternal condition on reproductive productivity in fishes. [source] Assembly rules and community models for unicellular organisms: patterns in diatoms of boreal streamsFRESHWATER BIOLOGY, Issue 4 2005JANI HEINO Summary 1. Many studies have addressed either community models (e.g. Clementsian versus Gleasonian gradients) or assembly rules (e.g. nestedness, checkerboards) for higher plant and animal communities, but very few studies have examined different non-random distribution patterns simultaneously with the same data set. Even fewer studies have addressed generalities in the distribution patterns of unicellular organisms, such as diatoms. 2. We studied non-randomness in the spatial distribution and community composition of stream diatoms. Our data consisted of diatom surveys from 47 boreal headwater streams and small rivers in northern Finland. Our analytical approaches included ordinations, cluster analysis, null model analyses, and associated randomisation tests. 3. Stream diatom communities did not follow discrete Clementsian community types, where multiple species occur exclusively in a single community type. Rather, diatom species showed rather individualistic responses, leading to continuous Gleasonian variability in community composition. 4. Although continuous variability was the dominating pattern in the data, diatoms also showed significant nestedness and less overlap in species distribution than expected by chance. However, these patterns were probably only secondary signals from species' individualistic responses to the environment. 5. Although unicellular organisms, such as diatoms, differ from multicellular organisms in several biological characteristics, they nevertheless appear to show largely similar non-random distribution patterns previously found for higher plants and metazoans. [source] Co-occurrence of ectoparasites on rodent hosts: null model analyses of data from three continentsOIKOS, Issue 1 2010Boris R. Krasnov We studied patterns of species co-occurrence in communities of ectoparasitic arthropods (ixodid ticks, mesostigmate mites and fleas) harboured by rodent hosts from South Africa (Rhabdomys pumilio), South America (Scapteromys aquaticus and Oxymycterus rufus) and west Siberia (Apodemus agrarius, Microtus gregalis, Microtus oeconomus and Myodes rutilus) using null models. We compared frequencies of co-occurrences of parasite species or higher taxa across host individuals with those expected by chance. When non-randomness of parasite co-occurrences was detected, positive but not negative co-occurrences of parasite species or higher taxa prevailed (except for a single sample of mesostigmate mites from O. rufus). Frequency of detection of non-randomness of parasite co-occurrences differed among parasite taxa, being higher in fleas and lower in mites and ticks. This frequency differed also among host species independent of parasite taxon, being highest in Microtus species and lowest in O. rufus and S. aquaticus. We concluded that the pattern of species co-occurrence in ectoparasite communities on rodent hosts is predominantly positive, depends on life history of parasites and may be affected to a great extent by life history of a host. [source] Co-occurrence of ectoparasites of marine fishes: a null model analysisECOLOGY LETTERS, Issue 1 2002Nicholas J. Gotelli We used null model analysis to test for nonrandomness in the structure of metazoan ectoparasite communities of 45 species of marine fish. Host species consistently supported fewer parasite species combinations than expected by chance, even in analyses that incorporated empty sites. However, for most analyses, the null hypothesis was not rejected, and co-occurrence patterns could not be distinguished from those that might arise by random colonization and extinction. We compared our results to analyses of presence,absence matrices for vertebrate taxa, and found support for the hypothesis that there is an ecological continuum of community organization. Presence,absence matrices for small-bodied taxa with low vagility and/or small populations (marine ectoparasites, herps) were mostly random, whereas presence,absence matrices for large-bodied taxa with high vagility and/or large populations (birds, mammals) were highly structured. Metazoan ectoparasites of marine fishes fall near the low end of this continuum, with little evidence for nonrandom species co-occurrence patterns. [source] Fire disturbance disrupts co-occurrence patterns of terrestrial vertebrates in Mediterranean woodlandsJOURNAL OF BIOGEOGRAPHY, Issue 5 2006Maurizio Sarà Abstract Aim, This paper uses null model analysis to explore the pattern of species co-occurrence of terrestrial vertebrate fauna in fire-prone, mixed evergreen oak woodlands. Location, The Erico,Quercion ilicis of the Mediterranean belt (50,800 m a.s.l.) in the Madonie mountain range, a regional park in northern Sicily (37°50, N, 14°05, E), Italy. Methods, The stratified sampling of vertebrates in a secondary succession of recent burned areas (BA, 1,2 years old), intermediate burned areas (INT, 4,10 years old) and ancient burned areas (CNB, > 50 years old), plus forest fragments left within burned areas (FF, 1,2 years old) permitted the comparison of patterns of species co-occurrence using a set of separate presence/absence matrices. First, the breeding avifauna derived from standardized point counts was analysed using Stone & Roberts'C -score, and by a null model algorithm (fixed/equiprobable). Secondly, the analysis was repeated using all vertebrate species recorded in the succession. Results, Sixty-five species were recorded in the 2-year study period in the four sample treatments. Birds were found to make up the largest component (63%) of the recorded assemblage. The BA treatment had the lowest species richness, followed in order by the small, medium and large FFs, and then by the CNBs. For both analyses (birds and total vertebrates), the C -scores were quite small and not significantly different from those that could be expected by chance in the BA and INT burned areas; this indicates a random co-occurrence among vertebrates of those assemblages. Contrariwise, for both analyses in the CNBs, the C -scores were large and significantly different from the simulated indices, thereby indicating a non-random co-occurrence pattern (segregation) of vertebrates in the undisturbed woodlands. In addition, C -score values for the surviving FFs show a significant aggregation of species. Main conclusions, The null model analyses highlighted a new aspect of fire disturbance in Mediterranean woodland ecosystems: the disruption in patterns of co-occurrence in the terrestrial vertebrate community. Wildfire alters community organization, inducing, for at least 10 years, a random aggregate of species. Communities re-assemble themselves, showing the occurrence of species segregation at least 50 years after fire. [source] Geographic variation in jungle cat (Felis chaus Schreber, 1777) (Mammalia, Carnivora, Felidae) body size: is competition responsible?BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2007SHOMITA MUKHERJEE There is a striking difference in body size of jungle cats (Felis chaus) in the west and the east of their distribution, with Israeli cats being 43% heavier than Indian cats. We tested the hypothesis that increasing competition from other small felids towards the east is responsible for the difference in body size. We measured jungle cat skulls for eight cranial and dental variables and related these to independent variables such as species richness (local and regional), latitude, longitude, temperature, and precipitation. Data from a narrow band between latitudes 24.0°N and 33.9°N, where Bergmann's rule was largely not observed, showed that the western population (, 50.0°E longitude) of jungle cats is larger than the eastern (> 60.0°E longitude) population with the size difference being most evident in the upper carnassials (P4L). Species richness at the regional level showed a significant negative relation to P4L. An even spacing in condylobasal length for a small-cat guild from India through null model analysis indicated the occurrence of character displacement. The results support the hypothesis that competition is responsible for geographical variation in jungle cat body size in the region where Bergmann's rule does not apply. © 2007 The Linnean Society of London, Biological Journal of the Linnean Society, 2007, 92, 163,172. [source] | |||||||||||||