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Nonrandom Distribution (nonrandom + distribution)
Selected AbstractsSurprising Effects on the Conformational Entropy due to Nonrandom Distributions of Local Conformations Along Unperturbed ChainsMACROMOLECULAR THEORY AND SIMULATIONS, Issue 7 2006Wayne L. Mattice Abstract Summary: Nonrandomness in the distribution of rotational isomeric states along a flexible unperturbed chain reduces its conformational entropy. Pairwise interdependence of the bonds is a necessary, but not sufficient, condition for a significant reduction. The reduction in conformational entropy from this source can be as severe as a factor of three. It is generally more severe for isotactic chains than for the syndiotactic chains constructed from the same monomer. Surprising effects are sometimes seen, such as the nearly identical reductions in conformational entropy for polydimethylsiloxane, a very flexible chain, and for poly(methyl methacrylate), a much stiffer chain. Fractional difference in conformational entropy due to nonrandomness versus probability of helix in helix-coil transition. [source] Novel regions of acquired uniparental disomy discovered in acute myeloid leukemiaGENES, CHROMOSOMES AND CANCER, Issue 9 2008Manu Gupta The acquisition of uniparental disomy (aUPD) in acute myeloid leukemia (AML) results in homozygosity for known gene mutations. Uncovering novel regions of aUPD has the potential to identify previously unknown mutational targets. We therefore aimed to develop a map of the regions of aUPD in AML. Here, we have analyzed a large set of diagnostic AML samples (n = 454) from young adults (age: 15,55 years) using genotype arrays. Acquired UPD was found in 17% of the samples with a nonrandom distribution particularly affecting chromosome arms 13q, 11p, and 11q. Novel recurrent regions of aUPD were uncovered at 2p, 17p, 2q, 17q, 1p, and Xq. Overall, aUPDs were observed across all cytogenetic risk groups, although samples with aUPD13q (5.4% of samples) belonged exclusively to the intermediate-risk group as defined by cytogenetics. All cases with a high FLT3 -ITD level, measured previously, had aUPD13q covering the FLT3 gene. Significantly, none of the samples with FLT3 -ITD - /FLT3 -TKD+ mutation exhibited aUPD13q. Of the 119 aUPDs observed, the majority (87%) were due to mitotic recombination while only 13% were due to nondisjunction. This study demonstrates aUPD is a frequent and significant finding in AML and pinpoints regions that may contain novel mutational targets. © 2008 Wiley-Liss, Inc. [source] Competing Presynaptic and Postsynaptic Effects of Ethanol on Cerebellar Purkinje NeuronsALCOHOLISM, Issue 8 2006Zhen Ming Background: Ethanol has actions on cerebellar Purkinje neurons that can result either in a net excitation or in inhibition of neuronal activity. The present study examines the interplay of presynaptic and postsynaptic mechanisms to determine the net effect of ethanol on the neuronal firing rate of cerebellar Purkinje neurons. Methods: Whole-cell voltage-clamp recording of miniature inhibitory postsynaptic currents (mIPSCs) from Purkinje neurons in cerebellar slices was used to examine the effect of ethanol on presynapticsynaptic release of , -aminobutyric acid (GABA) and glutamate. Extracellular recording was used to examine the net action of both presynaptic and postsynaptic effects of ethanol on the firing rate of Purkinje neurons. Results: Under whole-cell voltage clamp, the frequency of bicuculline-sensitive miniature postsynaptic currents (mIPSCs) was increased dose-dependently by 25, 50, and 100 mM ethanol without any change in amplitude or decay time. Despite this evidence of increased release of GABA by ethanol, application of 50 mM ethanol caused an increase in firing in some neurons and a decrease in firing in others with a nonrandom distribution. When both glutamatergic and GABAergic influences were removed by simultaneous application of 6-cyano-7-nitroquinoxaline-2,3-dione and picrotoxin, respectively, ethanol caused only an increase in firing rate. Conclusions: These data are consistent with a dual action of ethanol on cerebellar Purkinje neuron activity. Specifically, ethanol acts presynaptically to increase inhibition by release of GABA, while simultaneously acting postsynaptically to increase intrinsic excitatory drive. [source] NORTH ATLANTIC RIGHT WHALE DISTRIBUTION IN RELATION TO SEA-SURFACE TEMPERATURE IN THE SOUTHEASTERN UNITED STATES CALVING GROUNDSMARINE MAMMAL SCIENCE, Issue 2 2006Chérie A. Keller Abstract Standardized aerial surveys were used to document the winter (December,March) distribution of North Atlantic right whales in their calving area off the coasts of Georgia and northeastern Florida (1991,1998). Survey data were collected within four survey zones in and adjacent to federally designated critical habitat. These data, including whale-sighting locations and sampling effort, were used to describe right whale distribution in relation to sea-surface temperature (SST) from satellite-derived images. Locations where whales were sighted (n= 609) had an overall mean SST of 14.3°C ± 2.1° (range 8°,22°C). Data from two survey zones having sufficient data (including the "early warning system" (EWS) zone and the Florida nearshore) were pooled by season and stratified by month to investigate changes in monthly ambient SST and fine-scale distribution patterns of right whales in relation to SST within spatially explicit search areas. Using Monte Carlo techniques, SSTs and latitudes (means and standard deviations) of locations where whales were sighted were compared to a sampling distribution of each variable derived from daily-search areas. Overall, results support a nonrandom distribution of right whales in relation to SST: during resident months (January and February), whales exhibited low variability in observed SST and a suggested southward shift in whale distribution toward warmer SSTs in the EWS zone; while in the relatively warmer and southernmost survey zone (Florida nearshore), right whales were concentrated in the northern, cooler portion. Our results support that warm Gulf Stream waters, generally found south and east of delineated critical habitat, represent a thermal limit for right whales and play an important role in their distribution within the calving grounds. These results affirm the inclusion of SST in a multivariate predictive model for right whale distribution in their southeastern habitat. [source] De novo balanced chromosome rearrangements in prenatal diagnosisPRENATAL DIAGNOSIS, Issue 3 2009Daniela Giardino Abstract Objective We surveyed the datasheets of 29 laboratories concerning prenatal diagnosis of de novo apparently balanced chromosome rearrangements to assess the involvement of specific chromosomes, the breakpoints distribution and the impact on the pregnancy outcome. Method By means of a questionnaire, data on 269.371 analyses performed from 1983 to 2006 on amniotic fluid, chorionic villus and fetal blood samples were collected. Results A total of 246 balanced anomalies were detected at frequencies of 72% for reciprocal translocations, 18% for Robertsonian translocations, 7% for inversions and 3% for complex chromosome rearrangements. The total frequencies of balanced rearrangements were 0.09%, 0.08% and 0.05% on amniotic fluid, chorionic villus and fetal blood samples. Conclusion A preferential involvement of chromosomes 22, 7, 21, 3, 9 and 11 and a less involvement of chromosomes X, 19, 12, 6 and 1 was observed. A nonrandom distribution of the breakpoints across chromosomes was noticed. Association in the location of recurrent breakpoints and fragile sites was observed for chromosomes 11, 7, 10 and 22, while it was not recorded for chromosome 3. The rate of pregnancy termination was about 20%, with frequencies decreasing from complex chromosomal rearrangements (33%), reciprocal translocations (24%) to inversions (11%) and Robertsonian translocations (3%). Copyright © 2009 John Wiley & Sons, Ltd. [source] Structure and composition of the postsynaptic density during developmentTHE JOURNAL OF COMPARATIVE NEUROLOGY, Issue 20 2010Matthew T. Swulius Abstract In this study, we used electron tomography as well as immunogold labeling to analyze the morphology and distribution of proteins within postsynaptic densities (PSDs) isolated from rats before birth (embryonic day 19) and at postnatal days 2, 21, and 60. Our data provide direct evidence of distinct morphological and compositional differences in PSDs throughout development. Not all PSD components are present at the early stages of development, with a near lack of the scaffolding molecule PSD-95 at E19 and P2. The presence of NR1 and NR2b suggests that PSD-95 is not directly required for clustering of N-methyl-D-aspartic acid (NMDA) receptors in PSDs early in development. ,-Actinin is abundant by E19, suggesting that it is a core structural component of the PSD. Both , and , isoforms of Ca2+/calmodulin-dependent protein kinase II (CaMKII) are present early on but then rise in labeling density by approximately fourfold by P21. Among all the molecules studied, only calmodulin (CaM) was found in higher abundance early in PSD development and then fell in amount over time. Spatial analysis of the immunogold label shows a nonrandom distribution for all the proteins studied, lending support to the idea that the PSD is systematically assembled in an organized fashion. Morphological data from electron tomography shows that the PSD undergoes major structural changes throughout development. J. Comp. Neurol. 518:4243,4260, 2010. © 2010 Wiley-Liss, Inc. [source] Evidence for bias in estimates of local genetic structure due to sampling schemeANIMAL CONSERVATION, Issue 3 2006E. K. Latch Abstract Traditional population genetic analyses typically seek to characterize the genetic substructure caused by the nonrandom distribution of individuals. However, the genetic structuring of adult populations often does not remain constant over time, and may vary relative to season or life-history stages. Estimates of genetic structure may be biased if samples are collected at a single point in time, and will reflect the social organization of the species at the time the samples were collected. The complex population structures exhibited by many migratory species, where temporal shifts in social organization correspond to a large-scale shift in geographic distribution, serve as examples of the importance that time of sampling can have on estimates of genetic structure. However, it is often fine-scale genetic structure that is crucial for defining practical units for conservation and management and it is at this scale that distributional shifts of organisms relative to the timing of sampling may have a profound yet unrecognized impact on our ability to interpret genetic data. In this study, we used the wild turkey to investigate the effects of sampling regime on estimates of genetic structure at local scales. Using mitochondrial sequence data, nuclear microsatellite data and allozyme data, we found significant genetic structuring among localized winter flocks of wild turkeys. Conversely, we found no evidence for genetic structure among sampling locations during the spring, when wild turkeys exist in mixed assemblages of genetically differentiated winter flocks. If the lack of detectable genetic structure among individuals is due to an admixture of social units as in the case of wild turkeys during the spring, then the FIS value rather than the FST value may be the more informative statistic in regard to the levels of genetic structure among population subunits. [source] | |||||||||||||