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Nested Structure (nested + structure)

Distribution by Scientific Domains

Chemistry	33%

Selected Abstracts

An overview of the field and modelling studies on the effects of forest devastation on flooding and environmental issues

HYDROLOGICAL PROCESSES, Issue 5 2010
Yuichi Onda
Abstract Intensive field observations as well as monitoring of discharge, water quality, and soil erosion have been conducted in forest plantations in order to identify the effects of forest cover and management practices on runoff generation, sediment transport, and downstream environmental issues. Five experimental catchments, each with rather uniform lithology, were established in both managed and unmanaged plantations of Japanese cypress and cedar, as well as broadleaf forests. Field monitoring was conducted from sub-plots (e.g. splash cups) to small hillslope plots (0·5 × 2 m) to large hillslope-scale plots to first order streams (0·1,4 ha) and finally to larger catchments (>4 ha) in a nested structure. Remote sensing techniques were employed to identify broad scale forest stand and soil surface conditions. As part of this integrated study, these field-based monitoring and remote sensing techniques provide information for modelling runoff generation and developing adaptive management schemes with respect to catchment-scale water resources. Copyright © 2010 John Wiley & Sons, Ltd. [source]

Rodent assemblage in a habitat mosaic within the Valley Thicket vegetation of the Eastern Cape Province, South Africa

AFRICAN JOURNAL OF ECOLOGY, Issue 1 2008
Boris Kry, tufek
Abstract We sampled small mammal assemblage in a mosaic of Valley Thicket vegetation in the Great Fish River Reserve during the summers of 2001 and 2002. Assemblage was dominated by seven rodent species with a single nonrodent species (Elephantulus edwardii) in the 357 trapped specimens. Rhabdomys dilectus was the most abundant in both years, followed by Mus minutoides (ranking 2nd in 2001) and Mastomys coucha (2nd in 2002). These three species, which are widespread generalists, made up 85.0% of the total rodent catch in 2001 and 74.3% in 2002. Individual species were captured on 2,14 sites of a total of 17 and M. minutoides was the most widespread. The majority of samples consisted of two (ten sites in a pooled sample for 2 years) or three species (ten sites). Significant morphological structuring was found only in two-species samples. Species turnover was high both among sites and between the 2 years. We found no evidence of significant nested structure which would suggest hierarchical sets of ecological relationships among the species. Vegetation structure explained better than species interactions, the population variables in the rodent assemblage. Résumé Nous avons échantillonné l'assemblage de petits mammifères dans une mosaïque végétale de Valley Thicket dans la Great Fish River Reserve au cours des étés de 2001 et 2002. L'assemblage des 357 spécimens attrapés était dominé par sept espèces de rongeurs et une autre espèce (Elephantulus edwardii). Rhabdomys dilectusétait l'espèce la plus abondante les deux années, suivie par Mus minutoides (classé 2ème en 2001) et par Mastomys coucha (2ème en 2002). Ces trois espèces, qui sont des espèces généralistes très répandues, représentaient 85,0% des prises totales de rongeurs en 2001 et 74,3% en 2002. Les espèces individuelles furent capturées sur deux à 14 sites sur un total de 17, et Mus minutoidesétait la plus répandue. La majorité des échantillons se composaient de deux (10 sites sur un échantillonnage groupé de deux ans) ou trois espèces (dix sites). On n'a découvert de structure morphologique significative que dans des échantillons de deux espèces. Le turnover des espèces était élevé entre les différents sites et entre les années. Nous n'avons trouvé aucune preuve d'une structure significative qui puisse suggérer l'existence de relations hiérarchiques écologiques entre les espèces. La structure de la végétation expliquait mieux que les interactions interspécifiques les variables des populations de l'assemblage des rongeurs. [source]

Nested effects models for learning signaling networks from perturbation data

BIOMETRICAL JOURNAL, Issue 2 2009
Holger Fröhlich
Abstract Targeted gene perturbations have become a major tool to gain insight into complex cellular processes. In combination with the measurement of downstream effects via DNA microarrays, this approach can be used to gain insight into signaling pathways. Nested Effects Models were first introduced by Markowetz et al. as a probabilistic method to reverse engineer signaling cascades based on the nested structure of downstream perturbation effects. The basic framework was substantially extended later on by Fröhlich et al., Markowetz et al., and Tresch and Markowetz. In this paper, we present a review of the complete methodology with a detailed comparison of so far proposed algorithms on a qualitative and quantitative level. As an application, we present results on estimating the signaling network between 13 genes in the ER-, pathway of human MCF-7 breast cancer cells. Comparison with the literature shows a substantial overlap. [source]

Oxygen binding and its allosteric control in hemoglobin of the primitive branchiopod crustacean Triops cancriformis

FEBS JOURNAL, Issue 13 2007
Ralph Pirow
Branchiopod crustaceans are endowed with extracellular, high-molecular-mass hemoglobins (Hbs), the functional and allosteric properties of which have largely remained obscure. The Hb of the phylogenetically ancient Triops cancriformis (Notostraca) revealed moderate oxygen affinity, cooperativity and pH dependence (Bohr effect) coefficients: P50 = 13.3 mmHg, n50 = 2.3, and , = ,0.18, at 20 °C and pH 7.44 in Tris buffer. The in vivo hemolymph pH was 7.52. Bivalent cations increased oxygen affinity, Mg2+ exerting a greater effect than Ca2+. Analysis of cooperative oxygen binding in terms of the nested Monod,Wyman,Changeux (MWC) model revealed an allosteric unit of four oxygen-binding sites and functional coupling of two to three allosteric units. The predicted 2 × 4 and 3 × 4 nested structures are in accord with stoichiometric models of the quarternary structure. The allosteric control mechanism of protons comprises a left shift of the upper asymptote of extended Hill plots which is ascribable to the displacement of the equilibrium between (at least) two high-affinity (relaxed) states, similar to that found in extracellular annelid and pulmonate molluscan Hbs. Remarkably, Mg2+ ions increased oxygen affinity solely by displacing the equilibrium between the tense and relaxed conformations towards the relaxed states, which accords with the original MWC concept, but appears to be unique among Hbs. This effect is distinctly different from those of ionic effectors (bivalent cations, protons and organic phosphates) on annelid, pulmonate and vertebrate Hbs, which involve changes in the oxygen affinity of the tense and/or relaxed conformations. [source]

Geostatistical Prediction and Simulation of Point Values from Areal Data

GEOGRAPHICAL ANALYSIS, Issue 2 2005
Phaedon C. Kyriakidis
The spatial prediction and simulation of point values from areal data are addressed within the general geostatistical framework of change of support (the term support referring to the domain informed by each measurement or unknown value). It is shown that the geostatistical framework (i) can explicitly and consistently account for the support differences between the available areal data and the sought-after point predictions, (ii) yields coherent (mass-preserving or pycnophylactic) predictions, and (iii) provides a measure of reliability (standard error) associated with each prediction. In the case of stochastic simulation, alternative point-support simulated realizations of a spatial attribute reproduce (i) a point-support histogram (Gaussian in this work), (ii) a point-support semivariogram model (possibly including anisotropic nested structures), and (iii) when upscaled, the available areal data. Such point-support-simulated realizations can be used in a Monte Carlo framework to assess the uncertainty in spatially distributed model outputs operating at a fine spatial resolution because of uncertain input parameters inferred from coarser spatial resolution data. Alternatively, such simulated realizations can be used in a model-based hypothesis-testing context to approximate the sampling distribution of, say, the correlation coefficient between two spatial data sets, when one is available at a point support and the other at an areal support. A case study using synthetic data illustrates the application of the proposed methodology in a remote sensing context, whereby areal data are available on a regular pixel support. It is demonstrated that point-support (sub-pixel scale) predictions and simulated realizations can be readily obtained, and that such predictions and realizations are consistent with the available information at the coarser (pixel-level) spatial resolution. [source]

Nanoparticles of CdCl2 with closed cage structures

ISRAEL JOURNAL OF CHEMISTRY, Issue 1 2001
Reshef Tenne
Nanoparticles of various layered compounds having a closed cage or nanotubular structure, designated also inorganic fullerene-like (IF) materials, have been reported in the past. In this work IF -CdCl2 nanoparticles were synthesized by two methods. In one technique, a high temperature evaporation and subsequent condensation of dried cadmium chloride powder was used. In the other method, electron beam irradiation of the source powder led to its recrystallization into closed nanoparticles with a nonhollow core. The two methods are shown to produce nanoparticles of different topologies. While mostly spherical nested structures are obtained from the high temperature process, polyhedra with hexagonal or elongated rectangular characters are obtained by the electron beam induced process. The analysis also shows that, while the source (dried) powder is orthorhombic cadmium chloride monohydrate, the crystallized IF cage consists of the anhydrous 3R polytype which is not stable as bulk material in ambient atmosphere. Consistent with previous observations, this study shows that the seamless structure of the IF materials can stabilize phases, which are otherwise unstable in ambient conditions. [source]