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Near-isogenic Lines (near-isogenic + line)
Selected AbstractsAssociations between fungal and abiotic leaf spotting and the presence of mlo alleles in barleyPLANT PATHOLOGY, Issue 6 2007J. C. Makepeace The hypothesis that the increased use of the powdery mildew-resistance gene mlo has caused the increase in spotting diseases of barley over the past 20 years was tested in field trials. Near-isogenic lines with alleles of the Mlo gene for susceptibility or resistance to mildew in two parental backgrounds were trialled at four sites in Scotland and two in Ireland that were prone to spotting diseases, over 3 consecutive years. Mildew was controlled by sprays with quinoxyfen. Disease levels were low in the trials, the two most important diseases being scald caused by Rhynchosporium secalis and ramularia leaf spot caused by Ramularia collo-cygni. There were high levels of abiotic spotting. Lines with mutant mlo alleles consistently developed less Rh. secalis and Ra. collo-cygni, but more abiotic spots. This study indicates that the mlo mildew-resistance gene has not alone been responsible for the rise in spotting diseases over the past 20 years. Possible reasons for the rise are discussed, including the interaction of the mlo gene with the environment. [source] Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgressionMOLECULAR ECOLOGY, Issue 5 2006THOMAS E. JUENGER Abstract A long-standing and fundamental question in biology is how genes influence complex phenotypes. Combining near-isogenic line mapping with genome expression profiling offers a unique opportunity for exploring the functional relationship between genotype and phenotype and for generating candidate genes for future study. We used a whole-genome microarray produced with ink-jet technology to measure the relative expression level of over 21 500 genes from an Arabidopsis thaliana near-isogenic line (NIL) and its recurrent parent. The NIL material contained two introgressions (bottom of chromosome II and top of chromosome III) of the Cvi-1 ecotype in a Ler -2 ecotype genome background. Each introgression ,captures' a Cvi allele of a physiological quantitative trait loci (QTL) that our previous studies have shown increases transpiration and reduces water-use efficiency at the whole-plant level. We used a mixed model anova framework for assessing sources of expression variability and for evaluating statistical significance in our array experiment. We discovered 25 differentially expressed genes in the introgression at a false-discovery rate (FDR) cut-off of 0.20 and identified new candidate genes for both QTL regions. Several differentially expressed genes were confirmed with QRT,PCR (quantitative reverse transcription,polymerase chain reaction) assays. In contrast, we found no statistically significant differentially expressed genes outside of the QTL introgressions after controlling for multiple tests. We discuss these results in the context of candidate genes, cloning QTL, and phenotypic evolution. [source] Analysis by DC,EPG of the resistance to Bemisia tabaci on an Mi -tomato lineENTOMOLOGIA EXPERIMENTALIS ET APPLICATA, Issue 3 2001Y.X. Jiang Abstract The tomato Mi gene confers resistance to nematodes, Meloidogyne spp., and to the potato aphid, Macrosiphum euphorbiae (Thomas). Previous greenhouse choice assays with Bemisia tabaci (Gennadius) showed that tomato commercial varieties carrying this gene had significantly lower values of host suitability and whitefly reproduction than varieties lacking Mi. This indicated that Mi, or another gene in its region, could regulate partial resistance. In order to characterise this resistance, probing and feeding behaviour of Bemisia tabaci B-biotype was studied with DC Electrical Penetration Graph (EPG) technique on the near-isogenic tomato lines Moneymaker (without Mi) and Motelle (carrying Mi). Significant differences (P < 0.05) between tomato lines were found in EPG parameters related to epidermis and/or mesophyll tissues. On Motelle, a lower percentage of whiteflies achieved phloem phase and they made more probes before attaining first phloem phase, had a higher ratio (number of probes before first phloem phase)/(total number of probes), had a longer total duration of non-probing time, and a longer time before making the first intracellular puncture and before making the first phloem phase. In contrast, most of the parameters related to phloem phase were found not to differ significantly between these near-isogenic lines. The behavioural data strongly suggest that the partial resistance in the variety Motelle is due to factors in the epidermis and/or mesophyll that inhibit the whiteflies from reaching phloem sieve elements. However, once the stylets reach a sieve element, whitefly behaviour did not differ between the two varieties. Thus, phloem sap of the two varieties appears to be equally acceptable to the whiteflies. Further studies are necessary to provide a better understanding of these mechanisms of resistance to whiteflies in tomatoes. [source] Genotyping the Heading Date of Male-Sterile Rice Line II-32AJOURNAL OF INTEGRATIVE PLANT BIOLOGY, Issue 4 2006Jun-Feng Xu Abstract II-32A, an elite male-sterile line of rice (Oryza sativa L.), has been widely used for the production of hybrid rice seed in China. Heading date in most combinations using II-32A shows transgressive inheritance or similarity to the latter parent, but the genotype of II-32A with respect to major genes for heading time is unknown. This limits the further exploitation of this sterile line in breeding and hybrid seed production. Using a number of major gene heading date isogenic lines and heading date QTL near-isogenic lines, we genetically analyzed II-32B under both long- and short-day conditions. We show that II-32B carries two photoperiod-sensitive genes, E1 and E3, a recessive late-heading gene, ef-1, and a photoperiod-sensitive allele, Se-1u. In addition we identified in II-32B a recessive inhibitor for E1 or Se-1n and other modified photoperiod-sensitive genes. The heading-date constitution of II-32A was determined to be E1e2E3Se-1uef-1i-Se-1. (Managing editor: Li-Hui Zhao) [source] Isolate specificity of quantitative trait loci for partial resistance of barley to Puccinia hordei confirmed in mapping populations and near-isogenic linesNEW PHYTOLOGIST, Issue 3 2008Thierry C. Marcel Summary ,,Partial resistance is considered race-nonspecific and durable, consistent with the concept of ,horizontal' resistance. However, detailed observations of partial resistance to leaf rust (Puccinia hordei) in barley (Hordeum vulgare) revealed small cultivar × isolate interactions, suggesting a minor-gene-for-minor-gene interaction model, similar to so-called ,vertical' resistance. ,,Three consistent quantitative trait loci (QTLs), labelled Rphq2, Rphq3 and Rphq4, that were detected in the cross susceptible L94 × partially resistant Vada have been incorporated into the L94 background to obtain near-isogenic lines (NILs). Three isolates were used to map QTLs on seedlings of the L94 × Vada population and to evaluate the effect of each QTL on adult plants of the respective NILs under field conditions. ,,Rphq2 had a strong effect in seedlings but almost no effect in adult plants, while Rphq3 was effective in seedlings and in adult plants against all three isolates. However, Rphq4 was effective in seedlings and in adult plants against two isolates but ineffective in both development stages against the third, demonstrating a clear and reproducible isolate-specific effect. The resistance governed by the three QTLs was not associated with a hypersensitive reaction. ,,Those results confirm the minor-gene-for-minor-gene model suggesting specific interactions between QTLs for partial resistance and P. hordei isolates. [source] Characterization of cadmium uptake, translocation and storage in near-isogenic lines of durum wheat that differ in grain cadmium concentrationNEW PHYTOLOGIST, Issue 2 2006Jonathan J. Hart Summary ,,Here we examined several physiological properties of two near-isogenic lines of durum wheat (Triticum turgidum var. durum) that differ in grain cadmium accumulation, to identify the function of a gene locus that confers differential grain Cd concentrations. ,,Time- and concentration-dependent uptake and translocation studies using 109Cd were conducted on nutrient solution-grown seedlings. Root extracts were analysed by inductively coupled plasma emission spectrometry, gel filtration and capillary electrophoresis to determine the interaction between Cd and phytochelatins (PCs) in storage of Cd in roots. ,,The two isolines did not differ in time- or concentration-dependent root Cd uptake, but the low grain-Cd-accumulating isoline showed decreased movement of Cd from roots to shoots. All buffer-soluble Cd extracted from roots of both isolines was in the form of a low-molecular-weight PC-containing complex. ,,The data suggest that PC synthesis is not a limiting factor in the differential storage of Cd in roots, and that movement of Cd through the root and into the transpiration stream may be the cause of differential Cd partitioning in the two isolines. [source] Zinc effects on cadmium accumulation and partitioning in near-isogenic lines of durum wheat that differ in grain cadmium concentrationNEW PHYTOLOGIST, Issue 2 2005Jonathan J. Hart Summary ,,Here, we examined the effectiveness of two approaches for reducing cadmium (Cd) accumulation in durum wheat (Triticum turgidum L. var durum) grain: the application of supplemental zinc (Zn), and the use of cultivars exhibiting reduced grain Cd concentrations. ,,Two durum wheat near-isogenic lines (NIL) that differ in grain Cd accumulation were grown to maturity in solution culture containing a chelating agent to buffer the free activities of Zn and Cd at levels approximating those of field conditions. ,,The low Cd accumulating (L-Cd) isoline had Cd concentrations, in grains and shoot parts, which were 60,70% lower than those of the high Cd accumulating (H-Cd) isoline. Increasing the Zn activities in the nutrient solution from deficient to sufficient levels reduced the concentration of Cd in grains and vegetative shoot parts of both isolines. ,,The results suggest that supplemental Zn reduces Cd tissue concentrations by inhibiting Cd uptake into roots. Cd partitioning patterns between roots and shoots and between spike components suggest that the physiological basis for the low Cd trait is related to the compartmentation or symplasmic translocation of Cd. [source] Allosyndetic recombinants of the Aegilops peregrina- derived Lr59 translocation in common wheatPLANT BREEDING, Issue 4 2010G. F. Marais With 2 figures and 2 tables Abstract The wild relatives constitute a valuable source of rust resistance genes that can be utilized in wheat breeding. However, translocation of desirable genes through chromosome engineering inevitably results in co-transfer of deleterious wild species chromatin. An attempt was made to replace such redundant alien chromatin on the Lr59 translocation through homoeologous chromosome pairing and crossing over in the absence of Ph1. Strong segregation distortion resulted in the recovery of an unexpectedly high frequency of resistant recombinants. Eight of these retained comparatively short, distal segments of foreign chromatin, including Lr59. The foreign chromatin that remained in the latter plants was characterized with the use of twelve anonymous AFLP loci, the data of which suggested reduced homoeology with 1AL that could have been the result of a sub-terminal, paracentric inversion. Crossing over within an inversion loop may have resulted in a low frequency of genetically unbalanced gametes. It will therefore be necessary to develop near-isogenic lines of the eight recombinants and to do field evaluations in order to identify those that retained the shortest, balanced translocations. [source] Identification of a molecular marker linked to an Agropyron elongatum-derived gene Lr19 for leaf rust resistance in wheatPLANT BREEDING, Issue 3 2003D. P. Cherukuri Abstract The leaf rust resistance gene Lr19, transferred from Agropyron elongatum into wheat (Triticum aestivum L.) imparts resistance to all pathotypes of leaf rust (Puccinia recondita f.sp. tritici) in South-east Asia. A segregating F2 population from a cross between the leaf rust resistant parent ,HW 2046' carrying Lr19 and a susceptible parent ,Agra Local' was screened in the phytotron against a virulent pathotype 77-5 of leaf rust with the objective of identifying the molecular markers linked to Lr19. The gene was first tagged with a randomly amplified polymorphic DNA (RAPD) marker S73728. The RAPD marker linked to the gene Lr19 which mapped at 6.4 ± 0.035 cM distance, was converted to a sequence characterized amplified region (SCAR) marker. The SCAR marker (SCS73719) was specific to Lr19 and was not amplified in the near-isogenic lines (NILs) carrying other equally effective alien genes Lr9, Lr28 and Lr32 enabling breeders to pyramid Lr19 with these genes. [source] Molecular marker-facilitated pyramiding of different genes for powdery mildew resistance in wheatPLANT BREEDING, Issue 1 2000J. Liu Abstract Breeding durable resistance to pathogens and pests is a major task for modern plant breeders and pyramiding different resistance genes into a genotype is one way of achieving this. Three powdery mildew resistance gene combinations, Pm2+Pm4a, Pm2+Pm21, Pm4a+Pm21 were successfully integrated into an elite wheat cultivar ,Yang047,. Double homozygotes were selected from a small F2 population with the help of molecular markers. As the parents were near-isogenic lines (NILs) of ,Yang158,, the progenies showed good uniformity in morphological and other non-resistance agronomic traits. The present work illustrates the bright prospects for the utilization of molecular markers in breeding for host resistance. [source] Expression of Ht2 -related genes in response to the HT-Toxin of Exserohilum turcicum in MaizeANNALS OF APPLIED BIOLOGY, Issue 1 2010H. Wang Complementary DNA amplified fragment length polymorphism (cDNA-AFLP) analysis was conducted to analyze differential expression of Ht2 -related genes between maize (Zea mays) near-isogenic lines (NILs), Huangzaosi (HZS) and HuangzaosiHt2 (HZSHt2), following treatment with a crude extract of the HT-toxin. Twenty-one transcript-derived fragments (TDFs), designated H1 to H21, were specifically expressed or upregulated in HZSHt2 following exposure to the HT-toxin. Among them, 4, 7, 4, 2, 2 and 2 TDFs were detected at 3, 6, 12, 24, 48 and 72 h after treatment, respectively. BLAST analysis showed that H1, H11, H13 and H15 are related to regulation of the defence response to environmental stresses. H3, H6 and H10 are associated with energy metabolism. H5, H17 and H18 are involved in photosynthesis. H9 is similar to ubiquitin-like domain containing CTD phosphatase. H8, H9, H16 and H20 are probably transcription factors. The genes associated with basal energy metabolism and signal of stress tolerance were mainly expressed at 3 h after treatment. Transcription factor and most genes for stress tolerance were expressed at 6 h after treatment. RT-PCR analysis demonstrated that H8 was upregulated in HZSHt2 only at 6 h after exposure to the HT-toxin and H13 was upregulated at 6 and 12 h. The full length cDNAs of H8 (GenBank accession number FJ600319) and H13 (FJ600320) were cloned. The deduced protein encoded by H8 cDNA showed 77% homology to the Plus-3 domain containing protein, which is found in yeast gene Rtf1. H13 cDNA encodes a QM-like protein, which is an important protein in plant tolerance to environmental stress. The mechanism regulating the resistance of Ht2 to the HT-toxin might involve a translation elongation factor or an upregulated QM-like protein. [source] | ||||||||||