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Natural Systems (natural + system)
Selected AbstractsThe Use of Natural Systems to Remediate Groundwater: Department of Energy Experience at the Savannah River SiteREMEDIATION, Issue 3 2002Gerald C. Blount Natural remediation is moving toward the forefront as engineers clean groundwater at the Savannah River Site (SRS), a major Department of Energy (DOE) installation near Aiken, South Carolina. This article reviews two successful, innovative remediation methods currently being deployed: biosparging to treat chlorinated solvents and phytoremediation to address tritium in groundwater. The biosparging system reintroduces oxygen into the groundwater and injects nutrient compounds for in-situ remediation. The system has greatly reduced the concentrations of trichloroethylene (TCE) and vinyl chloride in wells downgradient from a sanitary landfill (SLF). Phytoremediation is an emerging technology that promises effective and inexpensive cleanup of certain hazardous wastes. Using natural processes, plants can break down, trap and hold, or transpire contaminants. This article discusses the use of phytoremediation to reduce the discharge of tritium to an on-site stream at SRS. © 2002 Wiley Periodicals Inc.* [source] Structural Equation Modeling and Natural Systems by J. B. GRACEBIOMETRICS, Issue 3 2007Article first published online: 31 AUG 200 No abstract is available for this article. [source] Predicting the impacts of climate change on the distribution of species: are bioclimate envelope models useful?GLOBAL ECOLOGY, Issue 5 2003Richard G. Pearson ABSTRACT Modelling strategies for predicting the potential impacts of climate change on the natural distribution of species have often focused on the characterization of a species' bioclimate envelope. A number of recent critiques have questioned the validity of this approach by pointing to the many factors other than climate that play an important part in determining species distributions and the dynamics of distribution changes. Such factors include biotic interactions, evolutionary change and dispersal ability. This paper reviews and evaluates criticisms of bioclimate envelope models and discusses the implications of these criticisms for the different modelling strategies employed. It is proposed that, although the complexity of the natural system presents fundamental limits to predictive modelling, the bioclimate envelope approach can provide a useful first approximation as to the potentially dramatic impact of climate change on biodiversity. However, it is stressed that the spatial scale at which these models are applied is of fundamental importance, and that model results should not be interpreted without due consideration of the limitations involved. A hierarchical modelling framework is proposed through which some of these limitations can be addressed within a broader, scale-dependent context. [source] Host reproduction and a sexually transmitted disease: causes and consequences of Coccipolipus hippodamiae distribution on coccinellid beetlesJOURNAL OF ANIMAL ECOLOGY, Issue 1 2004K. Mary Webberley Summary 1We know that sexually transmitted parasites and pathogens have extremely deleterious effects in human and domesticated animal populations, but know little of sexually transmitted diseases (STDs) in natural populations. 2One previously reported natural system is the sexually transmitted mite, Coccipolipus hippodamiae, on the eastern European coccinellid, Adalia bipunctata. Our aims were to determine how widespread this parasite is in terms of incidence and prevalence across host species, to identify the causes of the prevalence pattern and whether the parasite reduces fertility in all host species. 3Coccipolipus hippodamiae was present on four of 19 European species examined. The wide distribution and high prevalence of C. hippodamiae on A. bipunctata indicates that this is the major host. The mite was also present at substantial prevalence on Adalia decempunctata and at lower prevalence on Synharmonia (=Oenopia) conglobata and Calvia quatuordecimguttata. 4Laboratory studies on mite development time and transmission efficiency revealed that although physiological factors may affect incidence, they do not explain prevalence variation between hosts, but characteristics of host life history and reproductive behaviour are important in this context. Adalia bipunctata is more promiscuous than the less commonly infected A. decempunctata and S. conglobata. Diapause is needed before breeding will occur in C. quatuordecimguttata, leading to a lack of the consistent sexual activity between generations, which is needed for STD maintenance. Calvia quatuordecimguttata is probably periodically reinfected through hybrid matings with other host species. 5Coccipolipus hippodamiae infection has similar strong deleterious effects on female reproduction in A. decempunctata and S. conglobata as have previously been demonstrated in A. bipunctata. 6The results indicate that STDs may play a profound role in the ecology of promiscuous insect populations with overlapping generations. Here they may reach significant prevalence whilst exhibiting extreme virulence. [source] Participatory research methods in environmental science: local and scientific knowledge of a limnological phenomenon in the Pantanal wetland of BrazilJOURNAL OF APPLIED ECOLOGY, Issue 4 2000D.F. Calheiros Summary 1.,Participatory research methodologies incorporating local knowledge are important to the success of ecological research and the sustainable management of natural systems. However, methods of this type are not commonly employed in the natural sciences. 2.,We adopted a scientifically rigorous ethnographic research methodology to incorporate local knowledge into understanding a natural limnological phenomenon in the Brazilian Pantanal. Known locally as ,dequada', it is associated with fish kills. 3.,Using primarily open-ended questions and semi-structured interviews, 30 older head-of-household men were interviewed, by the same interviewer, in a small community representative of the few local riverside settlements. Their opinions were then contrasted with current scientific knowledge. 4.,In concordance with the scientific community, the local community cited decomposition of organic material as the principal cause of fish mortality due to the dequada. Local people therefore can have a well-founded understanding of their environment. 5.,This study demonstrates the importance of incorporating local knowledge to corroborate and, often, to guide the process of scientific inquiry. In this case, local knowledge added to scientific knowledge by providing a more complete understanding of the management and conservation of a natural system. We recommend that ecologists should be ready to acknowledge that local understanding can be greater than that of ,outsiders'. [source] Catalytically Active Tetramodular 6-Deoxyerythonolide B Synthase Fusion ProteinsCHEMBIOCHEM, Issue 11 2003Corinne M. Squire Dr. Easy as 1, 2, 3? Erythromycin (see scheme) is biosynthesised on a polyketide synthase consisting of three discrete bimodular protein subunits which, in the natural system, must dock together to form the active system. This paper details an experiment in which either two or all three of these proteins are translationally fused through their C and N termini. The tetramodular fusions are shown to be competent in biosynthesis. [source] Sinai Tschulok (1875,1945),a pioneer of CladisticsCLADISTICS, Issue 1 2010Olivier Rieppel Sinai Tschulok emigrated from the Ukraine to Switzerland, where he studied natural sciences, in particular biology. He founded and managed his own high school, which prepared students for entry to university-level education. This left him little time for research, which may explain why his work largely fell into oblivion. He did publish two influential books, however (Tschulok, S., 1910, Das System der Biologie in Forschung und Lehre, Gustav Fischer, Jena and Tschulok, S., 1922, Deszendenzlehre, Gustav Fischer, Jena), which were cited and commented upon favourably by both Walter Zimmermann and Willi Hennig. The most important point, in their opinion, was how Tschulok's explication of biological systematics had turned the "natural system" into a proof for the "Theory of Descent". The influence of Walter Zimmermann on Willi Hennig and the development of phylogenetic systematics is well known. Here some parts of Tschulok's writings are discussed that render him a pioneer in Cladistics. © The Willi Hennig Society 2009. [source] The Anticipated Utility of Zoos for Developing Moral Concern in ChildrenCURATOR THE MUSEUM JOURNAL, Issue 4 2009John Fraser It proposes a new theory regarding the psychological value of such experiences for the development of identity. The study used a constructivist grounded theory approach to explore parenting perspectives on the value of zoo visits undertaken by eight families from three adjacent inner-city neighborhoods in a major American city. The results suggest that parents use zoo visits as tools for promoting family values. These parents felt that experiences with live animals were necessary to encourage holistic empathy, to extend children's sense of justice to include natural systems, and to model the importance of family relationships. The author concludes that parents find zoos useful as a tool for helping their children to develop skills with altruism, to transfer environmental values, to elevate children's self-esteem, and to inculcate social norms that they believe will aid in their children's social success in the future. [source] Impacts of a woody invader vary in different vegetation communitiesDIVERSITY AND DISTRIBUTIONS, Issue 5 2008T. J. Mason Abstract The impact of an exotic species in natural systems may be dependent not only on invader attributes but also on characteristics of the invaded community. We examined impacts of the invader bitou bush, Chrysanthemoides monilifera ssp. rotundata, in fore and hind dune communities of coastal New South Wales, Australia. We compared invader impacts on vegetation structure, richness of both native and exotic growth forms and community variability in fore and hind dunes. We found that impacts of bitou invasion were context specific: in fore dune shrublands, functionally distinct graminoid, herb and climber rather than shrub growth forms had significantly reduced species richness following bitou invasion. However, in forested hind dunes, the functionally similar native shrub growth form had significantly reduced species richness following bitou invasion. Density of vegetation structure increased at the shrub level in both fore and hind dune invaded communities compared with non-invaded communities. Fore dune ground-level vegetation density declined at invaded sites compared with non-invaded sites, reflecting significant reductions in herb and graminoid species richness. Hind dune canopy-level vegetation density was reduced at invaded compared with non-invaded sites. Bitou bush invasion also affected fore dune community variability with significant increases in variability of species abundances observed in invaded compared with non-invaded sites. In contrast, variability among all hind dune sites was similar. The results suggest that effects of bitou bush invasion are mediated by the vegetation community. When bitou bush becomes abundant, community structure and functioning may be compromised. [source] Relative importance of different dispersal vectors for small aquatic invertebrates in a rock pool metacommunityECOGRAPHY, Issue 5 2008Bram Vanschoenwinkel The extent and frequency of passive overland dispersal of freshwater invertebrates as well as the relative importance of different dispersal vectors is not well documented. Although anecdotal evidence subscribing the feasibility of individual vectors in various aquatic systems is abundant, dispersal rates have rarely been quantified for different vectors in one study system. Earlier studies also usually investigated dispersal potential rather than actual dispersal rates. In this study we have estimated passive dispersal rates of invertebrate propagules within a cluster of temporary rock pools via water, wind and amphibians in a direct way. Overflows after heavy rains mediated dispersal of a large number of propagules through eroded channels between pools, which were collected in overflow traps. Taking into account model based predictions of overflow frequency, this corresponds with average dispersal rates of 4088 propagules/channel yr,1. Wind dispersal rates as measured by numbers of propagules collected on sticky traps mounted between pool basins were very high (average dispersal rate: 649 propagules m,2 in one month) and were positively related to the proximity of source populations. Finally, invertebrate propagules were also isolated from the faeces of African clawed frogs Xenopus laevis caught from the pools (on average 368 propagules/frog). The combination of short distance wind and overflow dispersal rates likely explain the dominant species sorting and mass effect patterns observed in the metacommunity in a previous study. Amphibian mediated dispersal was much less important as the Xenopus laevis population was small and migrations very rare. Based on our own results and available literature we conclude that both vector and propagule properties determine local passive dispersal dynamics of freshwater invertebrates. Accurate knowledge on rates and vectors of dispersal in natural systems are a prerequisite to increase our understanding of the impact of dispersal on ecology (colonisation, community assembly, coexistence) and evolution (gene flow, local adaptation) in fragmented environments. [source] Seeking a second opinion: uncertainty in disease ecologyECOLOGY LETTERS, Issue 6 2010Brett T. McClintock Ecology Letters (2010) 13: 659,674 Abstract Analytical methods accounting for imperfect detection are often used to facilitate reliable inference in population and community ecology. We contend that similar approaches are needed in disease ecology because these complicated systems are inherently difficult to observe without error. For example, wildlife disease studies often designate individuals, populations, or spatial units to states (e.g., susceptible, infected, post-infected), but the uncertainty associated with these state assignments remains largely ignored or unaccounted for. We demonstrate how recent developments incorporating observation error through repeated sampling extend quite naturally to hierarchical spatial models of disease effects, prevalence, and dynamics in natural systems. A highly pathogenic strain of avian influenza virus in migratory waterfowl and a pathogenic fungus recently implicated in the global loss of amphibian biodiversity are used as motivating examples. Both show that relatively simple modifications to study designs can greatly improve our understanding of complex spatio-temporal disease dynamics by rigorously accounting for uncertainty at each level of the hierarchy. [source] Avoidance by grazers facilitates spread of an invasive hybrid plantECOLOGY LETTERS, Issue 2 2010E. Grosholz Ecology Letters (2010) 13: 145,153 Abstract Biological invasions greatly increase the potential for hybridization among native and non-native species. Hybridization may influence the palatability of novel hybrids to consumers potentially influencing invasion success; however, the palatability of non-native hybrids relative to the parent species is poorly known. In contrast, studies of native-only hybrids find they are nearly always more palatable to consumers than the parent species. Here, I experimentally demonstrate that an invasive hybrid cordgrass (Spartina) is dramatically less palatable to grazing geese than the native parent species. Using field and aviary experiments, I show that grazing geese ignore the hybrid cordgrass and preferentially consume native Spartina. I also experimentally demonstrate that reduced herbivory of the invasive hybrid may contribute to faster spread in a California estuary. These results suggest that biological invasions may increase future opportunities for creating novel hybrids that may pose a greater risk to natural systems than the parent species. [source] Taking species abundance distributions beyond individualsECOLOGY LETTERS, Issue 6 2009Hélène Morlon Abstract The species abundance distribution (SAD) is one of the few universal patterns in ecology. Research on this fundamental distribution has primarily focused on the study of numerical counts, irrespective of the traits of individuals. Here we show that considering a set of Generalized Species Abundance Distributions (GSADs) encompassing several abundance measures, such as numerical abundance, biomass and resource use, can provide novel insights into the structure of ecological communities and the forces that organize them. We use a taxonomically diverse combination of macroecological data sets to investigate the similarities and differences between GSADs. We then use probability theory to explore, under parsimonious assumptions, theoretical linkages among them. Our study suggests that examining different GSADs simultaneously in natural systems may help with assessing determinants of community structure. Broadening SADs to encompass multiple abundance measures opens novel perspectives in biodiversity research and warrants future empirical and theoretical developments. [source] Experimental evolution of dispersal in spatiotemporally variable microcosmsECOLOGY LETTERS, Issue 10 2003Nicholas A. Friedenberg Abstract The world is an uncertain place. Individuals' fates vary from place to place and from time to time. Natural selection in unpredictable environments should favour individuals that hedge their bets by dispersing offspring. I confirm this basic prediction using Caenorhabditis elegans in experimental microcosms. My results agree with evolutionary models and correlations found previously between habitat stability and individual dispersal propensity in nature. However, I also find that environmental variation that triggers conditional dispersal behaviour may not impose selection on baseline dispersal rates. These findings imply that an increased rate of disturbance in natural systems has the potential to cause an evolutionary response in the life history of impacted organisms. [source] Diversity and abundance of freshwater Actinobacteria along environmental gradients in the brackish northern Baltic SeaENVIRONMENTAL MICROBIOLOGY, Issue 8 2009Karin Holmfeldt Summary Actinobacteria are highly abundant in pelagic freshwater habitats and also occur in estuarine environments such as the Baltic Sea. Because of gradients in salinity and other environmental variables estuaries offer natural systems for examining factors that determine Actinobacteria distribution. We studied abundance and community structure of Bacteria and Actinobacteria along two transects in the northern Baltic Sea. Quantitative (CARD-FISH) and qualitative (DGGE and clone libraries) analyses of community composition were compared with environmental parameters. Actinobacteria accounted for 22,27% of all bacteria and the abundance changed with temperature. Analysis of 549 actinobacterial 16S rRNA sequences from four clone libraries revealed a dominance of the freshwater clusters acI and acIV, and two new subclusters (acI-B scB-5 and acIV-E) were assigned. Whereas acI was present at all stations, occurrence of acII and acIV differed between stations and was related to dissolved organic carbon (DOC) and chlorophyll a (Chl a) respectively. The prevalence of the acI-A and acI-B subclusters changed in relation to total phosphorus (Tot-P) and Chl a respectively. Community structure of Bacteria and Actinobacteria differed between the river station and all other stations, responding to differences in DOC, Chl a and bacterial production. In contrast, the composition of active Actinobacteria (analysis based on reversely transcribed RNA) changed in relation to salinity and Tot-P. Our study suggests an important ecological role of Actinobacteria in the brackish northern Baltic Sea. It highlights the need to address dynamics at the cluster or subcluster phylogenetic levels to gain insights into the factors regulating distribution and composition of Actinobacteria in aquatic environments. [source] Linking microbial oxidation of arsenic with detection and phylogenetic analysis of arsenite oxidase genes in diverse geothermal environmentsENVIRONMENTAL MICROBIOLOGY, Issue 2 2009N. Hamamura Summary The identification and characterization of genes involved in the microbial oxidation of arsenite will contribute to our understanding of factors controlling As cycling in natural systems. Towards this goal, we recently characterized the widespread occurrence of aerobic arsenite oxidase genes (aroA -like) from pure-culture bacterial isolates, soils, sediments and geothermal mats, but were unable to detect these genes in all geothermal systems where we have observed microbial arsenite oxidation. Consequently, the objectives of the current study were to measure arsenite-oxidation rates in geochemically diverse thermal habitats in Yellowstone National Park (YNP) ranging in pH from 2.6 to 8, and to identify corresponding 16S rRNA and aroA genotypes associated with these arsenite-oxidizing environments. Geochemical analyses, including measurement of arsenite-oxidation rates within geothermal outflow channels, were combined with 16S rRNA gene and aroA functional gene analysis using newly designed primers to capture previously undescribed aroA -like arsenite oxidase gene diversity. The majority of bacterial 16S rRNA gene sequences found in acidic (pH 2.6,3.6) Fe-oxyhydroxide microbial mats were closely related to Hydrogenobaculum spp. (members of the bacterial order Aquificales), while the predominant sequences from near-neutral (pH 6.2,8) springs were affiliated with other Aquificales including Sulfurihydrogenibium spp., Thermocrinis spp. and Hydrogenobacter spp., as well as members of the Deinococci, Thermodesulfobacteria and ,- Proteobacteria. Modified primers designed around previously characterized and newly identified aroA -like genes successfully amplified new lineages of aroA- like genes associated with members of the Aquificales across all geothermal systems examined. The expression of Aquificales aroA- like genes was also confirmed in situ, and the resultant cDNA sequences were consistent with aroA genotypes identified in the same environments. The aroA sequences identified in the current study expand the phylogenetic distribution of known Mo-pterin arsenite oxidase genes, and suggest the importance of three prominent genera of the order Aquificales in arsenite oxidation across geochemically distinct geothermal habitats ranging in pH from 2.6 to 8. [source] Development and field validation of a predictive copper toxicity model for the green alga Pseudokirchneriella subcapitataENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 10 2003Karel A. C. De Schamphelaere Abstract In this sudy, the combined effects of pH, water hardness, and dissolved organic carbon(DO) concentration and type on the chronic (72-h) effect of copper on growth inhibition of the green alga Pseudokirchneriella subcapitata were investigated. Natural dissolved organic matter (DOM) was collected at three sites in Belgium and The Netherlands using reverse osmosis. A full central composite test design was used for one DOM and a subset of the full design for the two other DOMs. For a total number of 35 toxicity tests performed, 72-h effect concentration resulting in 10% growth inhibition (EbC10s) ranged from 14.2 to 175.9 ,g Cu/L (factor 12) and 72-h EbC50s from 26.9 to 506.8 ,g Cu/L (factor 20). Statistical analysis demonstrated that DOC concentration, DOM type, and pH had a significant effect on copper toxicity; hardness did not affect toxicity at the levels tested. In general, an increase in pH resulted in increased toxicity, whereas an increase of the DOC concentration resulted in decreased copper toxicity. When expressed as dissolved copper, significant differences of toxicity reduction capacity were noted across the three DOM types tested (up to factor 2.5). When expressed as Cu2+ activity, effect levels were only significantly affected by pH; linear relationships were observed between pH and the logarithm of the effect concentrations expressed as free copper ion activity, that is, log(EbC50) and log(EbC10): (1) log(EbC50) = ,1.431 pH + 2.050 (r2 = 0.95), and (2) log(EbC10) = ,1.140 pH , 0.812 (r2 = 0.91). A copper toxicity model was developed by linking these equations to the WHAM V geochemical speciation model. This model predicted 97% of the EbC50dissolved and EbC10dissolved values within a factor of two of the observed values. Further validation using toxicity test results that were obtained previously with copper-spiked European surface waters demonstrated that for 81% of tested waters, effect concentrations were predicted within a factor of two of the observed. The developed model is considered to be an important step forward in accounting for copper bioavailability in natural systems. [source] EVOLUTIONARY POTENTIAL OF A LARGE MARINE VERTEBRATE: QUANTITATIVE GENETIC PARAMETERS IN A WILD POPULATIONEVOLUTION, Issue 4 2009Joseph D. DiBattista Estimating quantitative genetic parameters ideally takes place in natural populations, but relatively few studies have overcome the inherent logistical difficulties. For this reason, no estimates currently exist for the genetic basis of life-history traits in natural populations of large marine vertebrates. And yet such estimates are likely to be important given the exposure of this taxon to changing selection pressures, and the relevance of life-history traits to population productivity. We report such estimates from a long-term (1995,2007) study of lemon sharks (Negaprion brevirostris) conducted at Bimini, Bahamas. We obtained these estimates by genetically reconstructing a population pedigree (117 dams, 487 sires, and 1351 offspring) and then using an "animal model" approach to estimate quantitative genetic parameters. We find significant additive genetic (co)variance, and hence moderate heritability, for juvenile length and mass. We also find substantial maternal effects for these traits at age-0, but not age-1, confirming that genotype,phenotype interactions between mother and offspring are strongest at birth; although these effects could not be parsed into their genetic and nongenetic components. Our results suggest that human-imposed selection pressures (e.g., size-selective harvesting) might impose noteworthy evolutionary change even in large marine vertebrates. We therefore use our findings to explain how maternal effects may sometimes promote maladaptive juvenile traits, and how lemon sharks at different nursery sites may show "constrained local adaptation." We also show how single-generation pedigrees, and even simple marker-based regression methods, can provide accurate estimates of quantitative genetic parameters in at least some natural systems. [source] BROADENING THE APPLICATION OF EVOLUTIONARILY BASED GENETIC PEST MANAGEMENTEVOLUTION, Issue 2 2008Fred Gould Insect- and tick-vectored diseases such as malaria, dengue fever, and Lyme disease cause human suffering, and current approaches for prevention are not adequate. Invasive plants and animals such as Scotch broom, zebra mussels, and gypsy moths continue to cause environmental damage and economic losses in agriculture and forestry. Rodents transmit diseases and cause major pre- and postharvest losses, especially in less affluent countries. Each of these problems might benefit from the developing field of Genetic Pest Management that is conceptually based on principles of evolutionary biology. This article briefly describes the history of this field, new molecular tools in this field, and potential applications of those tools. There will be a need for evolutionary biologists to interact with researchers and practitioners in a variety of other fields to determine the most appropriate targets for genetic pest management, the most appropriate methods for specific targets, and the potential of natural selection to diminish the effectiveness of genetic pest management. In addition to producing environmentally sustainable pest management solutions, research efforts in this area could lead to new insights about the evolution of selfish genetic elements in natural systems and will provide students with the opportunity to develop a more sophisticated understanding of the role of evolutionary biology in solving societal problems. [source] THE MUTATION MATRIX AND THE EVOLUTION OF EVOLVABILITYEVOLUTION, Issue 4 2007Adam G. Jones Evolvability is a key characteristic of any evolving system, and the concept of evolvability serves as a unifying theme in a wide range of disciplines related to evolutionary theory. The field of quantitative genetics provides a framework for the exploration of evolvability with the promise to produce insights of global importance. With respect to the quantitative genetics of biological systems, the parameters most relevant to evolvability are the G -matrix, which describes the standing additive genetic variances and covariances for a suite of traits, and the M -matrix, which describes the effects of new mutations on genetic variances and covariances. A population's immediate response to selection is governed by the G -matrix. However, evolvability is also concerned with the ability of mutational processes to produce adaptive variants, and consequently the M -matrix is a crucial quantitative genetic parameter. Here, we explore the evolution of evolvability by using analytical theory and simulation-based models to examine the evolution of the mutational correlation, r,, the key parameter determining the nature of genetic constraints imposed by M. The model uses a diploid, sexually reproducing population of finite size experiencing stabilizing selection on a two-trait phenotype. We assume that the mutational correlation is a third quantitative trait determined by multiple additive loci. An individual's value of the mutational correlation trait determines the correlation between pleiotropic effects of new alleles when they arise in that individual. Our results show that the mutational correlation, despite the fact that it is not involved directly in the specification of an individual's fitness, does evolve in response to selection on the bivariate phenotype. The mutational variance exhibits a weak tendency to evolve to produce alignment of the M -matrix with the adaptive landscape, but is prone to erratic fluctuations as a consequence of genetic drift. The interpretation of this result is that the evolvability of the population is capable of a response to selection, and whether this response results in an increase or decrease in evolvability depends on the way in which the bivariate phenotypic optimum is expected to move. Interestingly, both analytical and simulation results show that the mutational correlation experiences disruptive selection, with local fitness maxima at ,1 and +1. Genetic drift counteracts the tendency for the mutational correlation to persist at these extreme values, however. Our results also show that an evolving M -matrix tends to increase stability of the G -matrix under most circumstances. Previous studies of G -matrix stability, which assume nonevolving M -matrices, consequently may overestimate the level of instability of G relative to what might be expected in natural systems. Overall, our results indicate that evolvability can evolve in natural systems in a way that tends to result in alignment of the G -matrix, the M -matrix, and the adaptive landscape, and that such evolution tends to stabilize the G -matrix over evolutionary time. [source] Development of an Expert System Shell Based on Genetic Algorithms for the Selection of the Energy Best Available Technologies and their Optimal Operating Conditions for the Process IndustryEXPERT SYSTEMS, Issue 3 2001D.A. Manolas The development of genetic algorithms started almost three decades ago in an attempt to imitate the mechanics of natural systems. Since their inception, they have been applied successfully as optimization methods, and as expert systems, in many diverse applications. In this paper, a genetic-algorithm-based expert system shell is presented that, when combined with a proper database comprising the available energy-saving technologies for the process industry, is able to perform the following tasks: (a) identify the best available technologies (BATs) among the available ones for a given process industry, and (b) calculate their optimal design parameters in such a way that they comply with the energy requirements of the process. By the term BAT is meant the available energy-saving technology, among the existing ones in the market, that is the best for the case. [source] Ecosystem controls of juvenile pink salmon (Onchorynchus gorbuscha) and Pacific herring (Clupea pallasi) populations in Prince William Sound, AlaskaFISHERIES OCEANOGRAPHY, Issue 2001Robert T. Cooney Abstract Five years of field, laboratory, and numerical modelling studies demonstrated ecosystem-level mechanisms influencing the mortality of juvenile pink salmon and Pacific herring. Both species are prey for other fishes, seabirds, and marine mammals in Prince William Sound. We identified critical time-space linkages between the juvenile stages of pink salmon and herring rearing in shallow-water nursery areas and seasonally varying ocean state, the availability of appropriate zooplankton forage, and the kinds and numbers of predators. These relationships defined unique habitat dependencies for juveniles whose survivals were strongly linked to growth rates, energy reserves, and seasonal trophic sheltering from predators. We found that juvenile herring were subject to substantial starvation losses during a winter period of plankton diminishment, and that predation on juvenile pink salmon was closely linked to the availability of alternative prey for fish and bird predators. Our collaborative study further revealed that juvenile pink salmon and age-0 herring exploit very different portions of the annual production cycle. Juvenile pink salmon targeted the cool-water, early spring plankton bloom dominated by diatoms and large calanoid copepods, whereas young-of-the-year juvenile herring were dependent on warmer conditions occurring later in the postbloom summer and fall when zooplankton was composed of smaller calanoids and a diversity of other taxa. The synopsis of our studies presented in this volume speaks to contemporary issues facing investigators of fish ecosystems, including juvenile fishes, and offers new insight into problems of bottom-up and top-down control. In aggregate, our results point to the importance of seeking mechanistic rather than correlative understandings of complex natural systems. [source] Climatic influences and anthropogenic stressors: an integrated framework for streamflow management in Mediterranean-climate California, U.S.A.FRESHWATER BIOLOGY, Issue 2010THEODORE E. GRANTHAM Summary 1. In Mediterranean and other water-stressed climates, water management is critical to the conservation of freshwater ecosystems. To secure and maintain water allocations for the environment, integrated water management approaches are needed that consider ecosystem flow requirements, patterns of human water demands and the temporal and spatial dynamics of water availability. 2. Human settlements in Mediterranean climates have constructed water storage and conveyance projects at a scale and level of complexity far exceeding those in other, less seasonal climates. As a result, multiple ecological stressors associated with natural periods of flooding and drying are compounded by anthropogenic impacts resulting from water infrastructure development. 3. Despite substantial investments in freshwater ecosystem conservation, particularly in California, U.S.A., success has been limited because the scales at which river management and restoration are implemented are often discordant with the temporal and spatial scales at which ecosystem processes operate. Often, there is also strong social and political resistance to restricting water allocation to existing consumptive uses for environmental protection purposes. Furthermore, institutions rarely have the capacity to develop and implement integrated management programmes needed for freshwater ecosystem conservation. 4. We propose an integrated framework for streamflow management that explicitly considers the temporal and spatial dynamics of water supply and needs of both human and natural systems. This approach makes it possible to assess the effects of alternative management strategies to human water security and ecosystem conditions and facilitates integrated decision-making by water management institutions. 5. We illustrate the framework by applying a GIS-based hydrologic model in a Mediterranean-climate watershed in Sonoma County, California, U.S.A. The model is designed to assess the hydrologic impacts of multiple water users distributed throughout a stream network. We analyse the effects of vineyard water management on environmental flows to (i) evaluate streamflow impacts from small storage ponds designed to meet human water demands and reduce summer diversions, (ii) prioritise the placement of storage ponds to meet human water needs while optimising environmental flow benefits and (iii) examine the environmental and social consequences of flow management policies designed to regulate the timing of diversions to protect ecosystem functions. 6. Thematic implications: spatially explicit models that represent anthropogenic stressors (e.g. water diversions) and environmental flow needs are required to address persistent and growing threats to freshwater biodiversity. A coupled human,natural system approach to water management is particularly useful in Mediterranean climates, characterised by severe competition for water resources and high spatial and temporal variability in flow regimes. However, lessons learned from our analyses are applicable to other highly seasonal systems and those that are expected to have increased precipitation variability resulting from climate change. [source] Temporal changes in replicated experimental stream fish assemblages: predictable or not?FRESHWATER BIOLOGY, Issue 9 2006WILLIAMJ. Summary 1.,Natural aquatic communities or habitats cannot be fully replicated in the wild, so little is known about how initially identical communities might change over time, or the extent to which observed changes in community structure are caused by internal factors (such as interspecific interactions or traits of individual species) versus factors external to the local community (such as abiotic disturbances or invasions of new species). 2.,We quantified changes in seven initially identical fish assemblages, in habitats that were as similar as possible, in seminatural artificial streams in a 388-day trial (May 1998 to May 1999), and compared the change to that in fish assemblages in small pools of a natural stream during a year. The experimental design excluded floods, droughts, immigration or emigration. The experimental fish communities diverged significantly in composition and exhibited dissimilar trajectories in multivariate species space. Divergence among the assemblages increased from May through August, but not thereafter. 3.,Differences among the experimental assemblages were influenced by differences that developed during the year in algae cover and in potential predation (due to differential survival of sunfish among units). 4.,In the natural stream, fish assemblages in small pools changed more than those in the experimental units, suggesting that in natural assemblages external factors exacerbated temporal variation. 5.,Our finding that initially identical assemblages, isolated from most external factors, would diverge in the structure of fish assemblages over time suggests a lack of strong internal, deterministic controls in the assemblages, and that idiosyncratic or stochastic components (chance encounters among species; vagaries in changes in the local habitat) even within habitat patches can play an important role in assemblage structure in natural systems. [source] The influence of predatory fish on mayfly drift: extrapolating from experiments to natureFRESHWATER BIOLOGY, Issue 8 2002ANGUS R. MCINTOSH 1.,A knowledge of how individual behaviour affects populations in nature is needed to understand many ecologically important processes, such as the dispersal of larval insects in streams. The influence of chemical cues from drift-feeding fish on the drift dispersal of mayflies has been documented in small experimental channels (i.e. < 3 m), but their influence on dispersal in natural systems (e.g. 30 m stream reaches) is unclear. 2.,Using surveys in 10 Rocky Mountain streams in Western Colorado we examined whether the effects of predatory brook trout (Salvelinus fontinalis) on mayfly drift, that were apparent in stream-side channels, could also be detected in natural streams. 3.,In channel experiments, the drift of Baetis bicaudatus (Baetidae) was more responsive to variation in the concentration of chemical cues from brook trout than that of another mayfly, Epeorus deceptivus (Heptageniidae). The rate of brook trout predation on drifting mayflies of both species in a 2-m long observation tank was higher during the day (60,75%) but still measurable at night (5,10%). Epeorus individuals released into the water column were more vulnerable to trout predation by both day and night than were Baetis larvae treated similarly. 4.,Drift of all mayfly taxa in five fishless streams was aperiodic, whereas their drift was nocturnal in five trout streams. The propensity of mayflies to drift was decreased during the day and increased during the night in trout streams compared with fishless streams. In contrast to the channel experiments, fish biomass and density did not alter the nocturnal nature nor magnitude of mayfly drift in natural streams. 5.,In combination, these results indicate that mayflies respond to subtle differences in concentration of fish cues in experimental channels. However, temporal and spatial variation in fish cues available to mayflies in natural streams may have obscured our ability to detect responses at larger scales. [source] Chemical reactivity of microbe and mineral surfaces in hydrous ferric oxide depositing hydrothermal springsGEOBIOLOGY, Issue 3 2007S. V. LALONDE ABSTRACT The hot springs in Yellowstone National Park, USA, provide concentrated microbial biomass and associated mineral crusts from which surface functional group (FG) concentrations and pKa distributions can be determined. To evaluate the importance of substratum surface reactivity for solute adsorption in a natural setting, samples of iron-rich sediment were collected from three different springs; two of the springs were acid-sulfate-chloride (ASC) in composition, while the third was neutral-chloride (NC). At one of the ASC springs, mats of Sº -rich Hydrogenobaculum -like streamers and green Cyanidia algae were also collected for comparison to the sediment. All samples were then titrated over a pH range of 3,11, and comparisons were made between the overall FG availability and the concentration of solutes bound to the samples under natural conditions. Sediments from ASC springs were composed of hydrous ferric oxides (HFO) that displayed surface FGs typical of synthetic HFO, while sediments from the NC spring were characterized by a lower functional group density, reflected by decreased excess charge over the titration range (i.e., lower surface reactivity). The latter also showed a lower apparent point of zero charge (PZC), likely due the presence of silica (up to 78 wt. %) in association with HFO. Variations in the overall HFO surface charge are manifest in the quantities and types of solutes complexed; the NC sediments bound more cations, while the ASC sediments retained significantly more arsenic, presumably in the form of arsenate (H2AsO4,). When the microbial biomass samples were analyzed, FG concentrations summed over the titratable range were found to be an order of magnitude lower for the Sº-rich mats, relative to the algal and HFO samples that displayed similar FG concentrations on a dry weight basis. A diffuse-layer surface complexation model was employed to further illustrate the importance of surface chemical parameters on adsorption reactions in complex natural systems. [source] Determination of isotope fractionation factors and quantification of carbon flow by stable carbon isotope signatures in a methanogenic rice root model systemGEOBIOLOGY, Issue 2 2006H. PENNING ABSTRACT Methanogenic processes can be quantified by stable carbon isotopes, if necessary modeling parameters, especially fractionation factors, are known. Anoxically incubated rice roots are a model system with a dynamic microbial community and thus suitable to investigate principal geochemical processes in anoxic natural systems. Here we applied an inhibitor of acetoclastic methanogenesis (methyl fluoride), calculated the thermodynamics of the involved processes, and analyzed the carbon stable isotope signatures of CO2, CH4, propionate, acetate and the methyl carbon of acetate to characterize the carbon flow during anaerobic degradation of rice roots to the final products CO2 and CH4. Methyl fluoride inhibited acetoclastic methanogenesis and thus allowed to quantify the fractionation factor of CH4 production from H2/CO2. Since our model system was not affected by H2 gradients, the fractionation factor could alternatively be determined from the Gibbs free energies of hydrogenotrophic methanogenesis. The fractionation factor of acetoclastic methanogenesis was also experimentally determined. The data were used for successfully modeling the carbon flow. The model results were in agreement with the measured process data, but were sensitive to even small changes in the fractionation factor of hydrogenotrophic methanogenesis. Our study demonstrates that stable carbon isotope signatures are a proper tool to quantify carbon flow, if fractionation factors are determined precisely. [source] What does species richness tell us about functional trait diversity?GLOBAL ECOLOGY, Issue 4 2010Predictions, evidence for responses of species, functional trait diversity to land-use change ABSTRACT In the conservation literature on land-use change, it is often assumed that land-use intensification drives species loss, driving a loss of functional trait diversity and ecosystem function. Modern research, however, does not support this cascade of loss for all natural systems. In this paper we explore the errors in this assumption and present a conceptual model taking a more mechanistic approach to the species,functional trait association in a context of land-use change. We provide empirical support for our model's predictions demonstrating that the association of species and functional trait diversity follows various trajectories in response to land-use change. The central premise of our model is that land-use change impacts upon processes of community assembly, not species per se. From the model, it is clear that community context (i.e. type of disturbance, species pool size) will affect the response trajectory of the relationship between species and functional trait diversity in communities undergoing land-use change. The maintenance of ecosystem function and of species diversity in the face of increasing land-use change are complementary goals. The use of a more ecologically realistic model of responses of species and functional traits will improve our ability to make wise management decisions to achieve both aims in specific at-risk systems. [source] Drawdown and Stream Depletion Produced by Pumping in the Vicinity of a Partially Penetrating StreamGROUND WATER, Issue 5 2001James J. Butler Jr. Commonly used analytical approaches for estimation of pumping-induced drawdown and stream depletion are based on a series of idealistic assumptions about the stream-aquifer system. A new solution has been developed for estimation of drawdown and stream depletion under conditions that are more representative of those in natural systems (finite width stream of shallow penetration adjoining an aquifer of limited lateral extent). This solution shows that the conventional assumption of a fully penetrating stream will lead to a significant overestimation of stream depletion (> 100%) in many practical applications. The degree of overestimation will depend on the value of the stream leakance parameter and the distance from the pumping well to the stream. Although leakance will increase with stream width, a very wide stream will not necessarily be well represented by a model of a fully penetrating stream. The impact of lateral boundaries depends upon the distance from the pumping well to the stream and the stream leakance parameter. In most cases, aquifer width must be on the order of hundreds of stream widths before the assumption of a laterally infinite aquifer is appropriate for stream-depletion calculations. An important assumption underlying this solution is that stream-channel penetration is negligible relative to aquifer thickness. However, an approximate extension to the case of nonnegligible penetration provides reasonable results for the range of relative penetrations found in most natural systems (up to 85%). Since this solution allows consideration of a much wider range of conditions than existing analytical approaches, it could prove to be a valuable new tool for water management design and water rights adjudication purposes. [source] Bioinspired Design of Dynamic MaterialsADVANCED MATERIALS, Issue 23 2009Javeed Shaikh Mohammed Abstract An emerging approach for design of dynamic materials involves mimicking natural systems, which are adept at changing their structure and function in response to their environment. Biological systems possess a diverse range of dynamic mechanisms, including competitive ligand,protein binding, enzyme-catalyzed remodeling, and allosteric protein conformational changes. These dynamic mechanisms are now being exploited by materials scientists and engineers to design "bioinspired" synthetic materials that undergo responsive assembly and disassembly as well as dynamic volume and shape changes. The purpose of this review is to describe recent progress in design and development of bioinspired dynamic materials, with a particular emphasis on hydrogel networks. We specifically focus on emerging approaches that use biological phenomena as an inspiration for design of materials. [source] | |||||||||||||||||||||||||||||||||||||||||||