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Natural Distribution (natural + distribution)
Selected AbstractsEco-phenotypic growth in juvenile smooth marron, Cherax cainii (Decapoda: Parastacidae)FISHERIES MANAGEMENT & ECOLOGY, Issue 5 2007T. BURTON Abstract, The smooth marron, Cherax cainii Austin, now occurs in regions of Western Australia that are warmer and drier than those of the natural distribution. Animals sourced along a south to north geographical axis decrease in body mass per unit length. Juveniles reared from gravid females sourced from four sites along this axis were raised in common laboratory conditions for 14 weeks. No differences between sites were observed in body mass, standardised for length, indicating that in situ differences are a phenotypic response to local conditions. [source] Predicting the impacts of climate change on the distribution of species: are bioclimate envelope models useful?GLOBAL ECOLOGY, Issue 5 2003Richard G. Pearson ABSTRACT Modelling strategies for predicting the potential impacts of climate change on the natural distribution of species have often focused on the characterization of a species' bioclimate envelope. A number of recent critiques have questioned the validity of this approach by pointing to the many factors other than climate that play an important part in determining species distributions and the dynamics of distribution changes. Such factors include biotic interactions, evolutionary change and dispersal ability. This paper reviews and evaluates criticisms of bioclimate envelope models and discusses the implications of these criticisms for the different modelling strategies employed. It is proposed that, although the complexity of the natural system presents fundamental limits to predictive modelling, the bioclimate envelope approach can provide a useful first approximation as to the potentially dramatic impact of climate change on biodiversity. However, it is stressed that the spatial scale at which these models are applied is of fundamental importance, and that model results should not be interpreted without due consideration of the limitations involved. A hierarchical modelling framework is proposed through which some of these limitations can be addressed within a broader, scale-dependent context. [source] Distribution of Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis and Prevotella intermedia in an Australian populationJOURNAL OF CLINICAL PERIODONTOLOGY, Issue 12 2001S. M. Hamlet Abstract Background, aim: The present study describes (i) the natural distribution of the three putative periodontopathogens Porphyromonas gingivalis, Prevotella intermedia and Actinobacillus actinomycetemcomitans in an Australian population and (ii) the relationship between these organisms, pocket depths and supragingival plaque scores. Methods: Subgingival plaque was collected from the shallowest and deepest probing site in each sextant of the dentition. In total, 6030 subgingival plaque samples were collected from 504 subjects. An ELISA utilising pathogen-specific monoclonal antibodies was used to quantitate bacterial numbers. Results::A. actinomycetemcomitans was the most frequently detected organism (22.8% of subjects) followed by P. gingivalis and P. intermedia (14.7% and 9.5% of subjects respectively). The majority of infected subjects (83%) were colonised by a single species of organism. A. actinomycetemcomitans presence was over-represented in the youngest age group but under-represented in the older age groups. Conversely, P. gingivalis and P. intermedia presence was under-represented in the youngest age group but over-represented in the older age groups. Differing trends in the distribution of these bacteria were observed between subjects depending upon the site of the infection or whether a single or mixed infection was present; however, these differences did not reach significance. Bacterial presence was strongly associated with pocket depth for both A. actinomycetemcomitans and P. gingivalis. For A. actinomycetemcomitans, the odds of a site containing this bacterium decrease with deeper pockets. In contrast, for P. gingivalis the odds of a site being positive are almost six times greater for pockets >3 mm than for pockets 3 mm. These odds increase further to 15.3 for pockets deeper than 5 mm. The odds of a site being P. intermedia positive were marginally greater (1.16) for pockets deeper than 3 mm. Conclusions: This cross-sectional study in a volunteer Australian population, demonstrated recognised periodontal pathogens occur as part of the flora of the subgingival plaque. Prospective longitudinal studies are needed to examine the positive relationship between pocket depth and pathogen presence with periodontal disease initiation and/or progression. Zusammenfassung Hintergrund: Die vorliegende Studie beschreibt: 1.) die natürliche Verteilung der 3 vermutlichen Parodontalpathogene Porphyromonas gingivalis und Prevotella intermedia und Actinobacillus actinomycetemcomitans in einer Australischen Population und 2.) das Verhältnis zwischen diesen Organismen, der Taschentiefe und den supragingivalen Plaquewerten. Methoden: In jedem Sextanten des Gebisses wurde subgingivale Plaque von der flachsten und tiefsten Stelle entnommen. Insgesamt wurden 6030 subgingivalen Plaqueproben bei 504 Personen entnommen. Um die Anzahl der Bakterien zu quantifizieren wurde ein ELISA, welcher mit pathogen-spezifische monoklonale Antikörper arbeitet, verwendet. Ergebnisse:A. actinomycetemcomitans war der Keim, der am häufigsten nachgewiesen wurde (22.8% der Personen), gefolgt von P. gingivalis und P. intermedia (14.7% bzw. 9.5% der Personen). Die Mehrheit der Personen (83%) wurde von einer einzigen Spezies eines Organismus kolonisiert. Das Vorkommen von A. actinomycetemcomitans war in der jüngsten Altersgruppe überrepräsentiert, aber in der älteren Altersgruppen unterrepräsentiert. Im Gegensatz dazu war das Vorkommen von P. gingivalis und P. intermedia in der jüngsten Altersgruppe unterepräsentiert, aber in der älteren Altersgruppen überrepräsentiert. Zwischen der Personen wurden unterschiedliche Trends in der Verteilung dieser Bakterien beobachtet. Diese waren abhängig von der Stelle der Infektion oder ob eine Monoinfektion oder Mischinfektion vorhanden war. Jedoch erreichten diese Unterschiede nicht den Bereich der Signifikanz. Sowohl für A. actinomycetemcomitans als auch P. gingivalis war das Vorkommen von Bakterien stark mit der Taschentiefe assoziiert. Für A. actinomycetemcomitans nimmt die Odds einer Stelle welche das Bakterium enthält mit der Tiefe der Tasche ab. Im Gegensatz dazu ist die Odds einer Stelle die positiv für P. gingivalis ist fast sechsmal größer für Taschen >3 mm als für Taschen 3 mm. Diese Odds erhöht sich weiter auf 15.3 für Taschen die tiefer als 5 mm sind. Die Odds einer Stelle die positive für P. intermedia ist war nur etwas größer (1.16) für Taschen, die tiefer als 3 mm sind. Schlussfolgerung: Diese Querschnittsstudie einer Australischen Population von Freiwillingen zeigte, dass die erkannten Parodontalpathogene ein Bestandteil der Flora der subgingivalen Plaque sind. Prospektive Langzeitstudien sind notwendig, um die positive Beziehung zwischen der Taschentiefe und dem Vorkommen von Pathogenen mit dem Beginn und der Progression einer Parodontalerkrankung zu untersuchen. Résumé Origine: Cette étude décrit (i) la distribution naturelle des 3 parodontopathogènes présume,Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis et Prevotella intermedia dans une population australienne et (ii) la relation entre ces organismes, les profondeurs de poche et les scores de plaque supragingivale. Méthodes: La plaque sous-gingivale a été prélevée sur le site le moins profond et sur le site le plus profond de chaque sextant de la denture. Au total, 6030 échantillons de plaque sous-gingivale ont été prélevés chez 504 sujets. Un test ELISA par anticorps monoclonaux spécifiques des pathogènes a permis de quantifier les nombres de bactéries. Résultats:Actinobacillus actinomycetemcomitans était l'organisme le plus fréquement détecté (22.8%) des sujets) suivi de Porphyromonas gingivalis et Prevotella intermedia (14.7% et 9.5% des sujets, respectivement). La majorité des sujets infectés (83%) étaient colonisés par une unique espèce d'organisme. La présence d'Actinobacillus actinomycetemcomitansétait surreprésentée dans le groupe des plus jeunes mais sous-représentée dans les groupes plus agés. Des tendances différentes de la distribution de ces bactéries étaient observées entre les sujets selon le site d'infection ou la présence d'une infection unique ou mixte. Cependant, ces différences n'étaient pas significatives. La présence bactérienne était fortement associée avec la profondeur de poche pour Actinobacillus actinomycetemcomitans et Porphyromonas gingivalis, pour Actinobacillus actinomycetemcomitans, les chances d'un site de contenir cette bactérie diminuant avec la profondeur de poche, alors que pour Porphyromonas gingivalis, les chances d'un site d'être positif étaient 6× plus grande pour des poches >3 mm que pour les poches 3 mm. Ces chances augmentaient en plus à 15.3 pour les poches >5 mm. Les chances d'un site d'être positif pour P. intermediaétaient légèrement plus importantes pour les poches de plus de 3 mm. Conclusions: Cette étude croisée dans une population volontaire australienne a démontré que des pathogènes parodontaux reconnus font partie de leur plaque sous-gingivale. Des études prospectives longitudinales sont nécessaires pour examiner les relations positives entre la profondeur de poche et la présence de pathogènes et l'initiation et/ou la progression de la maladie. [source] Juvenile shrubs show differences in stress tolerance, but no competition or facilitation, along a stress gradientJOURNAL OF ECOLOGY, Issue 1 2000Lisa A. Donovan Summary 1,We investigated experimentally differences in abiotic stress tolerance and the effects of plant,plant interactions for two desert shrubs, Chrysothamnus nauseosus and Sarcobatus vermiculatus, along a soil salinity (NaCl) and boron (B) gradient at Mono Lake, California, USA. Based on differences in natural distribution, and the classical expectation of a trade-off between competitive ability and stress tolerance, we hypothesized that (i) Chrysothamnus would have greater competitive ability than Sarcobatus at the low salinity end of the gradient, and that (ii) Sarcobatus would be more stress tolerant than Chrysothamnus. 2,Juvenile target plants of Chrysothamnus and Sarcobatus were planted into four sites along the gradient. Biomass was determined by destructive harvests over two growing seasons. At each site, interspecific relative competitive ability was assessed as the effect of Sarcobatus neighbours on Chrysothamnus targets compared to the effect of Chrysothamnus neighbours on Sarcobatus targets. Stress tolerance was assessed as the ability of each species to survive and grow, in the absence of neighbours, at different sites along the gradient. 3,The two species did not differ in the relative strength of plant,plant interactions, providing no support for the expectation that Chrysothamnus had greater competitive ability than Sarcobatus. Furthermore, there was no evidence for competition or facilitation, either interspecific or intraspecific, at any site in either year of the study. However, fertilization treatments demonstrated nutrient limitations, soil water reached limiting levels and root systems of targets and neighbours overlapped substantially. It is therefore surprising that plant,plant interactions among juveniles apparently play little role in the growth and survival of shrubs in this saline desert habitat. 4,Sarcobatus was more stress tolerant than Chrysothamnus and the two species performed optimally at different sites along the gradient. Sarcobatus juveniles grew best at the two most saline sites and survived at all sites, whereas Chrysothamnus juveniles grew best at a low-salinity site and did not survive at the most saline site. The difference in site of optimal performance may be due to differences in nutrient limitations or to interactions between nutrient availability and sodium (Na) and B tolerance. [source] Development of an Acanthamoeba -specific Reverse Dot-Blot and the Discovery of a New RibotypeTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 6 2001REBECCA J. CAST ABSTRACT. Acanthamoeba is a genus of free-living amoebae, of which some speeies have been found to cause opportunistic infections in humans. The identification of these amoebae in natural and disease samples is based primarily upon morphological features. While these features are more than adequate for identification to the genus level, they are not useful for species-level identification. This not only leads to difficulty in the diagnosis of infections, but it makes an accurate assessment of the natural distribution of acanthamoebae very difficult to achieve. To improve this situation, a detection method was developed that utilizes both selective polymerase chain reaction amplification and the reverse dot-blot. Oligonucleotides were designed to be specific for the described ribosomal groups (or ribotypes) of Acanthamoeba, as well as one specific for the genus itself. When this method was used to analyze a series of Acanthamoeba cultures from Pakistan, a new ribotype was identified in addition to the detection of the ubiquitously distributed T4 type. [source] Fitting and comparing seed germination models with a focus on the inverse normal distributionAUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS, Issue 3 2004Michael E. O'Neill Summary This paper reviews current methods for fitting a range of models to censored seed germination data and recommends adoption of a probability-based model for the time to germination. It shows that, provided the probability of a seed eventually germinating is not on the boundary, maximum likelihood estimates, their standard errors and the resultant deviances are identical whether only those seeds which have germinated are used or all seeds (including seeds ungerminated at the end of the experiment). The paper recommends analysis of deviance when exploring whether replicate data are consistent with a hypothesis that the underlying distributions are identical, and when assessing whether data from different treatments have underlying distributions with common parameters. The inverse normal distribution, otherwise known as the inverse Gaussian distribution, is discussed, as a natural distribution for the time to germination (including a parameter to measure the lag time to germination). The paper explores some of the properties of this distribution, evaluates the standard errors of the maximum likelihood estimates of the parameters and suggests an accurate approximation to the cumulative distribution function and the median time to germination. Additional material is on the web, at http://www.agric.usyd.edu.au/staff/oneill/. [source] Genetic Evidence for Natural Hybridization between Species of Dioecious Ficus on Island Populations1BIOTROPICA, Issue 3 2003Tracey L. Parrish ABSTRACT Natural hybrids between Ficus septica and two closely related dioecious species, F. fistulosa and F. hispida, were confirmed using amplified fragment length polymorphisms (AFLP) and chloroplast DNA markers. Ficus species have a highly species-specific pollination mutualism with agaonid wasps. Therefore, the identification of cases in which breakdown in this sophisticated system occurs and the circumstances under which it happens is of interest. Various studies have confirmed that Ficus species are able to hybridize and that pollinator-specificity breakdown can occur under certain conditions. This study is the first example in which hybrid identity and the presence of hybrids in the natural distribution of parental species for Ficus have been confirmed with molecular markers. Hybrid individuals were identified on three island locations in the Sunda Strait region of Indonesia. These findings support Janzen's (1979) hypothesis that breakdown in pollinator specificity is more likely to occur on islands. We hypothesized that hybrid events could occur when the population size of pollinator wasps was small or had been small in one of the parental species. Later generation hybrids were identified, indicating that backcrossing and introgression did occur to some extent and that therefore, hybrids could be fertile. The small number of hybrids found indicated that there was little effect of hybridization on parental species integrity over the study area. Although hybrid individuals were not common, their presence at multiple sites indicated that the hybridization events reported here were not isolated incidences. Chloroplast DNA haplotypes of hybrids were not derived solely from one species, suggesting that the seed donor was not of the same parental species in all hybridization events. [source] Is competition important to arctic zooplankton community structure?FRESHWATER BIOLOGY, Issue 9 2004Andrew R. Dzialowski Summary 1. Daphnia pulex and Daphnia middendorffiana are commonly found in the Toolik Lake region of arctic Alaska. These two species are very similar morphologically, although their natural distributions differ markedly: D. pulex is restricted to shallow ponds, while D. middendorffiana is widely distributed and found in a variety of ponds and lakes. We compared the reproductive capabilities of D. pulex and D. middendorffiana grown under similar resource conditions and in the absence of the invertebrate predator Heterocope septentrionalis. In situ life table and mesocosm experiments were conducted in Toolik Lake and Dam Pond, habitats that have historically contained natural populations of D. middendorffiana, but never D. pulex. 2. Daphnia pulex exhibited a significantly higher net growth rate than D. middendorffiana in both life table and mesocosm experiments although D. pulex has never been found in either Toolik Lake or Dam Pond. Daphnia middendorffiana exhibited a negative net growth rate in Dam Pond, which had lower resource levels then Toolik Lake. Therefore, the smaller D. pulex appears to have a lower food threshold concentration than the larger D. middendorffiana. 3. Our results indicate that D. pulex is a superior resource competitor in the Toolik Lake region. These results combined with distributional patterns suggest that the restricted distribution of D. pulex in these arctic lakes and ponds cannot be explained by resource competition alone. We suggest that in the presence of H. septentrionalis, predation is an important factor structuring arctic zooplankton communities in the Toolik Lake region. [source] Rapid mixing of Gibbs sampling on graphs that are sparse on averageRANDOM STRUCTURES AND ALGORITHMS, Issue 2 2009Elchanan Mossel Abstract Gibbs sampling also known as Glauber dynamics is a popular technique for sampling high dimensional distributions defined on graphs. Of special interest is the behavior of Gibbs sampling on the Erd,s-Rényi random graph G(n,d/n), where each edge is chosen independently with probability d/n and d is fixed. While the average degree in G(n,d/n) is d(1 - o(1)), it contains many nodes of degree of order log n/log log n. The existence of nodes of almost logarithmic degrees implies that for many natural distributions defined on G(n,p) such as uniform coloring (with a constant number of colors) or the Ising model at any fixed inverse temperature ,, the mixing time of Gibbs sampling is at least n1+,(1/log log n). Recall that the Ising model with inverse temperature , defined on a graph G = (V,E) is the distribution over {±}Vgiven by . High degree nodes pose a technical challenge in proving polynomial time mixing of the dynamics for many models including the Ising model and coloring. Almost all known sufficient conditions in terms of , or number of colors needed for rapid mixing of Gibbs samplers are stated in terms of the maximum degree of the underlying graph. In this work, we show that for every d < , and the Ising model defined on G (n, d/n), there exists a ,d > 0, such that for all , < ,d with probability going to 1 as n ,,, the mixing time of the dynamics on G (n, d/n) is polynomial in n. Our results are the first polynomial time mixing results proven for a natural model on G (n, d/n) for d > 1 where the parameters of the model do not depend on n. They also provide a rare example where one can prove a polynomial time mixing of Gibbs sampler in a situation where the actual mixing time is slower than npolylog(n). Our proof exploits in novel ways the local tree like structure of Erd,s-Rényi random graphs, comparison and block dynamics arguments and a recent result of Weitz. Our results extend to much more general families of graphs which are sparse in some average sense and to much more general interactions. In particular, they apply to any graph for which every vertex v of the graph has a neighborhood N(v) of radius O(log n) in which the induced sub-graph is a tree union at most O(log n) edges and where for each simple path in N(v) the sum of the vertex degrees along the path is O(log n). Moreover, our result apply also in the case of arbitrary external fields and provide the first FPRAS for sampling the Ising distribution in this case. We finally present a non Markov Chain algorithm for sampling the distribution which is effective for a wider range of parameters. In particular, for G(n, d/n) it applies for all external fields and , < ,d, where d tanh(,d) = 1 is the critical point for decay of correlation for the Ising model on G(n, d/n). © 2009 Wiley Periodicals, Inc. Random Struct. Alg., 2009 [source] A spectral technique for random satisfiable 3CNF formulasRANDOM STRUCTURES AND ALGORITHMS, Issue 4 2008Abraham Flaxman Abstract Let I be a random 3CNF formula generated by choosing a truth assignment , for variables x1, xn uniformly at random and including every clause with i literals set true by , with probability pi, independently. We show that for any constants 0 , ,2,,3 , 1 there is a constant dmin so that for all d , dmin a spectral algorithm similar to the graph coloring algorithm of Alon and Kahale will find a satisfying assignment with high probability for p1 = d/n2, p2 = ,2d/n2, and p3 = ,3d/n2. Appropriately setting the ,i's yields natural distributions on satisfiable 3CNFs, not-all-equal-sat 3CNFs, and exactly-one-sat 3CNFs. © 2008 Wiley Periodicals, Inc. Random Struct. Alg., 2008 [source] | |||||||||||||