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Monitoring Purposes (monitoring + purpose)
Selected AbstractsUtility of flow cytometry immunophenotyping in multiple myeloma and other clonal plasma cell-related disorders,CYTOMETRY, Issue 4 2010Bruno Paiva Abstract In recent years, multiparameter flow cytometry (MFC) immunophenotyping has become mandatory in the clinical management of hematological malignancies, both for diagnostic and monitoring purposes. Multiple myeloma (MM) and other clonal plasma cell-related (PC) disorders should be no exception to this paradigm, but incorporation of immunophenotypic studies in the management of patients with PC disorders is still far from being routinely established in many diagnostic flow cytometry laboratories. For clonal PC disorders, MFC is of clear and established clinical relevance in: (1) the differential diagnosis between MM and other PC-related disorders; (2) the identification of high-risk MGUS and smoldering MM; (3) minimal residual disease investigation after therapy; additionally it may also be useful for (4) the definition of prognosis-associated antigenic profiles; and (5) the identification of new therapeutic targets. In this article, we review the clinical value of MFC in the study of PC disorders, with specific emphasis in those areas where consensus exists on the need to incorporate MFC into routine evaluation of MM and other clonal PC-related disorders. © 2010 Clinical Cytometry Society [source] Sponges as biomonitors of heavy metals in spatial and temporal surveys in northwestern Mediterranean: Multispecies comparison,ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 11 2007Emma Cebrian Abstract Contamination by heavy metals has increased drastically in the coastal Mediterranean during the last 20 years. A comparative study on metal bioaccumulation by four widespread sponge species (Crambe crambe, Chondrosia reniformis, Phorbas tenacior, and Dysidea avara) has been performed to select the most suitable species for metal monitoring. Copper bioaccumulation fits an accumulation strategy while Pb concentration seems to be regulated in most sponges. Crambe crambe was the only studied species that bioaccumulated Pb and Cu as a function of the available metal, proving its suitability for monitoring purposes. Then, we examined its effectiveness as a bioindicator at large spatial and temporal scales, comparing metal accumulation in this species and in sediments. Crambe crambe provided accurate information on the background levels of metals in the area at both spatial and temporal scales, and furthermore it reflected seasonal fluctuations of the bioavailable metals, which would be impossible to assess by means of a sediment survey. [source] Effects of handling on heat shock protein expression in rainbow trout (Oncorhynchus mykiss)ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 3 2002Barbara Shayne Washburn Abstract As part of an effort to validate the use of heat shock proteins (HSPs) as biomarkers of exposure to and effects of contaminants, we evaluated the effect of two handling regimens on the induction of HSP 60 and 70 in rainbow trout (Oncorhynchus mykiss). Fish were acclimated to laboratory conditions for several weeks before the beginning of the experiment. Fish were then captured by net, placed in a cooler for 1 h while being transported in a truck, returned to their original tanks, then sacrificed 6 to 8 h later. Tricaine methane sulfonate (MS-222) was used during different phases of handling to reduce handling stress. Heat-stressed fish were included in the experiment as a positive control. Muscle, liver, gills, and heart were analyzed for HSP 60 and 70 by immunoblotting. We found no effect of any handling regimen on the induction of HSPs. These findings suggest that the capture and transport of fish for environmental monitoring purposes should not interfere with the use of stress proteins as biomarkers. [source] Large scale wildlife monitoring studies: statistical methods for design and analysisENVIRONMETRICS, Issue 2 2002Kenneth H. Pollock Abstract Techniques for estimation of absolute abundance of wildlife populations have received a lot of attention in recent years. The statistical research has been focused on intensive small-scale studies. Recently, however, wildlife biologists have desired to study populations of animals at very large scales for monitoring purposes. Population indices are widely used in these extensive monitoring programs because they are inexpensive compared to estimates of absolute abundance. A crucial underlying assumption is that the population index (C) is directly proportional to the population density (D). The proportionality constant, ,, is simply the probability of ,detection' for animals in the survey. As spatial and temporal comparisons of indices are crucial, it is necessary to also assume that the probability of detection is constant over space and time. Biologists intuitively recognize this when they design rigid protocols for the studies where the indices are collected. Unfortunately, however, in many field studies the assumption is clearly invalid. We believe that the estimation of detection probability should be built into the monitoring design through a double sampling approach. A large sample of points provides an abundance index, and a smaller sub-sample of the same points is used to estimate detection probability. There is an important need for statistical research on the design and analysis of these complex studies. Some basic concepts based on actual avian, amphibian, and fish monitoring studies are presented in this article. Copyright © 2002 John Wiley & Sons, Ltd. [source] How internal waves influence the vertical distribution of zooplanktonFRESHWATER BIOLOGY, Issue 1 2007KARSTEN RINKE Summary 1. We present data with a high spatio-temporal resolution from a 72-h field survey in Bautzen Reservoir (Saxony, Germany). The aims of this survey were to observe hydrophysical processes during a period of unstable stratification in spring and investigate the effect of wind-induced internal waves on the vertical distribution of zooplankton. 2. Wind velocities up to 10 m s,1 caused a strong downwelling event of warm water at the sampling site and led to the generation of internal waves with an amplitude of 4 m. 3. The zooplankton community, which was dominated by Daphnia galeata, inhabited epilimnetic waters. Downwelling enlarged the thickness of the epilimnetic layer and, hence, led to high zooplankton abundances down to relatively deep water strata indicating lateral transport of zooplankton. As a consequence, area-specific zooplankton abundances increased considerably (max. fourfold) during downwelling. 4. We conclude that classical limnological field sampling, such as for monitoring purposes, can lead to severely biased estimates of zooplankton abundance due to the interfering effects of hydrophysical processes like internal waves. 5. Backscattering strengths measured by a simultaneously deployed Acoustic Doppler Current Profiler (600 kHz) were found to be correlated with estimated zooplankton abundances based on plankton samples. [source] A framework for network quality monitoring in the VoIP environmentINTERNATIONAL JOURNAL OF NETWORK MANAGEMENT, Issue 4 2007Ana Flàvia M. de Lima Monitoring speech quality in Voice over IP (VoIP) networks is important to ensure a minimal acceptable level of speech quality for IP calls running through a managed network. Information such as packet loss, codec type, jitter, end-to-end delay and overall speech quality enables the network manager to verify and accurately tune parameters in order to adjust network problems. The present article proposes the deployment of a monitoring architecture that collects, stores and displays speech quality information about concluded voice calls. This architecture is based on our proposed MIB (Management Information Base) VOIPQOS, deployed for speech quality monitoring purposes. Currently, the architecture is totally implemented, but under adjustment and validation tests. In the future, the VOIPQOS MIB can be expanded to automatically analyze collected data and control VoIP clients and network parameters for tuning the overall speech quality of ongoing calls. Copyright © 2006 John Wiley & Sons, Ltd. [source] Accurate correlations to estimate refinery fuel gas, natural gas, and fuel oil CO2 emission factors and its uncertaintyAICHE JOURNAL, Issue 9 2010Esteban F. Márquez-Riquelme Abstract The quantification of Greenhouse Gas (GHG) inventories and its associated uncertainty is a relevant activity often requested by authorities. Accurate methods to calculate both inventories and the involved uncertainty are convenient for close monitoring purposes. Using Monte Carlo simulations, correlations of high accuracy between emission factors (EFs), lower heating value (LHV), and density were built for refinery fuel gas, natural gas and fuel/residual oil. In all cases, the data generated by the simulations also served the purpose of building correlations for upper and lower bounds of the EF that can be readily used to estimate the EF estimation uncertainty. The correlations were tested against actual refinery data and the results show that more accurate estimations were obtained compared with EF obtained from laboratory composition methods and from methods that estimate EF as proportional to LHV only. In the case of fuel and residual oils, the correlations developed are a function of LHV only but were improved by using a cubic polynomial. The calculation of upper and lower bounds for EF offer a convenient method to estimate EF uncertainties that are required in official GHG emissions inventory calculations. In conclusion, in addition to LHV, the use of one additional readily available fuel property, namely fuel density is sufficient to reduce uncertainty of estimation of GHG (in this case CO2) from combustion to acceptable levels. © 2010 American Institute of Chemical Engineers AIChE J, 2010 [source] Validated assay for quantification of oxcarbazepine and its active dihydro metabolite 10-hydroxycarbazepine in plasma by atmospheric pressure chemical ionization liquid chromatography/mass spectrometryJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 7 2002Hans H. Maurer Abstract Oxcarbazepine (OX), a new antiepileptic, may lead to unwanted side-effects or even life-threatening intoxications after overdose. Therefore, a validated liquid chromatographic/mass spectrometric (LC/MS) assay was developed for the quantification of OX and its pharmacologically active dihydro metabolite (dihydrooxcarbazepine, DOX, often named 10-hydroxycarbazepine). OX and DOX were extracted from plasma by the authors' standard liquid/liquid extraction and were separated on a Merck LiChroCART column with Superspher 60 RP Select B as the stationary phase. Gradient elution was performed using aqueous ammonium formate and acetonitrile. The compounds were quantified in the selected-ion monitoring mode using atmospheric pressure chemical ionization electrospray LC/MS. The assay was fully validated. It was found to be selective. The calibration curves were linear from 0.1 to 50 mg l,1 for OX and DOX. Limits of quantification were 0.1 mg l,1 for OX and DOX. The absolute recoveries were between 60 and 86%. The accuracy and precision data were within the required limits. The analytes in frozen plasma samples were stable for at least 1 month. The method was successfully applied to several authentic plasma samples from patients treated or intoxicated with OX. The measured therapeutic plasma levels ranged from 1 to 2 mg l,1 for OX and from 10 to 40 mg l,1 for DOX. The validated LC/MS assay proved to be appropriate for quantification of OX and DOX in plasma for clinical toxicology and therapeutic drug monitoring purposes. The assay is part of a general analysis procedure for the isolation, separation and quantification of various drugs and for their full-scan screening and identification. Copyright © 2002 John Wiley & Sons, Ltd. [source] Risk assessment methodologies for predicting phosphorus losses,JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, Issue 4 2003Oscar F. Schoumans Abstract Risk assessment parameters are needed to assess the contribution of phosphorus (P) losses from soil to surface water, and the effectiveness of nutrient and land management strategies for the reduction of P loss. These parameters need to take into account the large temporal and spatial variation in P transfer from individual fields arising from (a) changing but predictable factors such as land use, soil P status, P application rates, forms and ways of fertilization and spreading, (b) predictable but inherent factors such as soil type, soil dispersivity, slope and hydrological routing, and (c) unpredictable weather factors such as rainfall amount and intensity. In most situations, water transport is the driving force of P loss from agricultural land to surface water. Therefore, the hydrological pathways determine to a large extent the relevance of these different factors. Over the last decade several soil P tests have been proposed as a first step to link field conditions to risk of P loss. The major reason is that these soil P tests are also meaningful in discussions with farmers. Recently, more complex P loss risk parameters have been derived based on different approaches. However, the scope and purposes of these P loss risk parameters vary remarkably. Finally, there is a need to evaluate the usefulness of new P tests that can be used as an indicator of P loss risk, e.g. in relation to monitoring purposes. The implementation of the EU Water Framework Directive will increase this need. In this paper, the practicable applicability of P parameters for risk assessment is discussed in relation to purpose, scale (from field, farm to catchment), effectiveness, sensibility etc. Furthermore, a conceptual framework for P indicators is presented and evaluated, based on the outcome of the presentations and the discussions in Zurich. No translation. [source] Effects of trapping effort and trap shyness on estimates of tiger abundance from camera trap studiesANIMAL CONSERVATION, Issue 3 2004Per Wegge Camera trapping has recently been introduced as an unbiased and practical method for monitoring tiger abundance. In a high density area in the Royal Bardia National Park in lowland Nepal, we tested this method by trapping very intensively within a 25 km2 area to determine the true number of animals in that area. We then tested the effect of study design by sub-sampling the data set using varying distances between trap stations and by reducing the number of trapping nights at each station. We compared these numbers with the density estimates generated by the capture,recapture models of the program CAPTURE. Both distance between traps and trapping duration greatly influenced the results. For example, increasing the inter-trap distance from 1 to 2.1 km and reducing the trapping duration per station from 15 to 10 nights reduced the number of tigers captured by 25%. A significant decrease in trapping rates during successive 5-night periods suggested that our tigers became trap-shy, probably because of the photo flash and because they detected the camera traps from cues from impression pads 50 m from the traps. A significant behavioural response was also confirmed by the program CAPTURE. The best capture,recapture model selected by the computer program (Mbh) gave precise estimates from data collected by the initial 1 km spacing of traps. However, when we omitted data from half the number of traps, thus decreasing the sampling effort to a more realistic level for monitoring purposes, the program CAPTURE underestimated the true number of tigers. Most probably, this was due to a combination of trap shyness and the way the study was designed. Within larger protected areas, total count from intensive, stratified subsampling is suggested as a complementary technique to the capture,recapture method, since it circumvents the problem of trap shyness. [source] FOAM, a new simple benthic degradative module for the LAMP3D model: an application to a Mediterranean fish farmAQUACULTURE RESEARCH, Issue 11 2008Patrizia De Gaetano Abstract The modelling framework already introduced by Doglioli, Magaldi, Vezzulli and Tucci to predict the potential impact of a marine fish farm is improved following different directions, namely (1) real historic current-metre data are used to force the simulations, (2) settling velocity values specifically targeting Mediterranean fish species are used, and (3) a new benthic degradative module, the Finite Organic Accumulation Module, is added to the modelling framework. The Finite Organic Accumulation Module uses the output of the other functional units of the modelling framework to calculate the organic load on the seabed. The Finite Organic Accumulation Module considers the natural capability of the seafloor in absorbing part of the organic load. Different remineralization rates reflect the sediment stress level according to the work of Findlay and Watling. Organic degradation for both uneaten feed and faeces is evaluated by changing the release modality (continuous and periodical) and by varying the settling velocities. It is found that the maximum impact on the benthic community is observed either for quickly sinking uneaten feed released twice a day, or for less intense near-bottom current conditions. If both the above-mentioned scenarios coexist, a high stress level is established in the sediment. The model also suggests that the use of self-feeders in cages can reduce farm impacts significantly. These results show how the new and more complete modelling framework presented here is able to improve the objectivity in the decision-making processes and how it may be successfully used for planning and monitoring purposes. [source] Lake habitat suitability for the rare European macrophyte Najas flexilis (Willd.) Rostk.AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 3 2005& Schmidt Abstract 1.Najas flexilis (Willd.) Rostk. & Schmidt is a submerged annual macrophyte, rare in Europe, which is protected under the EC Habitats Directive. 2.N. flexilis grows in deep, often coloured or turbid water in mesotrophic lakes. Because of this habitat preference it is difficult to locate and assess the ecological state of populations of the species for conservation monitoring purposes. 3.A method is described based on plant community information that can be used to determine the baseline probability that conditions in a lake are suitable for supporting N. flexilis growth. This can be applied to conservation management decisions, such as whether a detailed underwater survey is justified for monitoring the integrity of existing populations of N. flexilis, or whether the lake may be a suitable site for introduction, or reintroduction, of populations of the plant. 4.Two methods of plant community description are compared: a quantitative micro-habitat scale approach and a whole-lake-scale qualitative approach. Plant community data collected using each method were grouped using TWINSPAN, and environmental descriptors of the sites comprising each plant community group were compared statistically. 5.Micro-habitat-scale community groups differed significantly only in the light extinction coefficient, indicating the zone within the lake in which N. flexilis occurred. 6.The whole-lake-scale community groups differed in a number of environmental variables indicative of eutrophication and acidification, two major environmental threats to N. flexilis survival. 7.This study suggests that a lake-scale qualitative plant community description would be a better indicator of site suitability for N. flexilis growth than a quantitative micro-habitat plant community description. This is because the whole-lake-scale approach could detect a difference in the environmental factors that affect N. flexilis growth, which the micro-habitat scale approach could not. Copyright © 2005 John Wiley & Sons, Ltd. [source] Seroreactivity against MAGE-A and LAGE-1 proteins in melanoma patientsBRITISH JOURNAL OF DERMATOLOGY, Issue 2 2003D. Usener Summary Background Cancer-testis antigens exemplify a growing number of tumour antigens which are expressed in a variety of malignancies, but not in normal tissues other than germ cells, primarily those of the testis. Objectives To investigate the humoral response to known cancer-testis antigens in melanoma patients. Methods We used phage clones coding for seven different melanoma antigens MAGE-A or LAGE-1A proteins. These clones were isolated using the newly developed DNA hybridization analysis of recombinantly expressed cDNA libraries (HYREX) approach. HYREX combines the advantage of a nonradioactive library screening method with the possibility of subsequently analysing the serological response to the recombinant proteins. We isolated clones coding for MAGE-A1, -A3, -A4b, -A6, -A9 and -A12, as well as LAGE-1A. Additionally, we correlated gene expression and seroreactivity. Results Between 13% and 27% of sera (n = 15) were reactive against individual tumour antigens. We found the presence of specific antibodies was, with only two exceptions, generally correlated with mRNA expression of the antigen within cell lines derived from the same patient. While cross-reactivity of patients' IgG might play a role in these cases, antibodies from patients' sera were able to distinguish even the closely related MAGE-A3 and -A6. In general, the mRNA expression frequency was higher than the detected IgG responses. Conclusions Antibody recognition of specific tumour antigens by patients' sera may be used for evaluating the possible immunogenicity of new antigens; serological tests could be used for tumour monitoring purposes. [source] | ||||||||||||||||