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Model Domain (model + domain)

Distribution by Scientific Domains

Engineering	40%
Earth and Environmental Science	30%

Selected Abstracts

Improving Opportunities for Regulatory Acceptance of QSARs: The Importance of Model Domain, Uncertainty, Validity and Predictability

MOLECULAR INFORMATICS, Issue 3 2003

Abstract For Quantitative Structure Activity Relationships (QSARs) to be accepted by the regulated and regulatory communities, their scope for use needs to be agreed upon by government and industry. This paper discusses the importance of model domain, uncertainty, validity and predictability assessment in promoting the regulatory acceptance of QSARs. [source]

Trophodynamic modeling of walleye pollock (Theragra chalcogramma) in the Doto area, northern Japan: model description and baseline simulations

FISHERIES OCEANOGRAPHY, Issue 2004
ORIO YAMAMURA
Abstract An age-structured trophodynamic model was constructed to quantitatively analyze factors affecting post-settlement mortality and growth of walleye pollock (Theragra chalcogramma) in the Doto area, the main nursery ground of the Japan Pacific population. The model included (i) multiple age classes of pollock, (ii) a generic predator, (iii) fisheries, and (iv) major prey of pollock. Major processes considered were (i) recruitment, (ii) bottom-up control of somatic growth, (iii) mortality because of predation, cannibalism and fishing, (iv) size-selective prey selection, (v) temperature-dependent bioenergetics such as conversion efficiency and daily consumption rate, and (vi) production and advective supply of prey. By assuming that pollock select prey based upon both relative abundance and predator,prey size relationships, the model accurately simulated seasonal and ontogenetic variations in the diet. However considering ontogenetic segregation, the model showed that, due to cannibalism, newly recruited fish would be totally consumed within 6 months after settlement. By considering segregation (10% overlap during spring and 0.1% during other seasons), an agreement of diet between the simulation and empirical data averaged 82.7% for the different seasons and fish sizes. Euphausiids, the most important prey of pollock, suffered the highest predation impact (22.2 ± 5.3 WWg m,2 yr,1) exceeding annual production in the model domain (17.2 ± 0.1 WWg m,2 yr,1), indicating that an advective supply of prey is necessary to support the pollock population. The daily ration of pollock during spring and summer averaged at 1.2 and 0.6% BW day,1 for small (,200 mm) and large (>200 mm) pollock, respectively; this daily ration was reduced by half during autumn and winter. [source]

A Hybrid Finite-Difference and Analytic Element Groundwater Model

GROUND WATER, Issue 4 2010
H.M. Haitjema
Regional finite-difference models tend to have large cell sizes, often on the order of 1,2 km on a side. Although the regional flow patterns in deeper formations may be adequately represented by such a model, the intricate surface water and groundwater interactions in the shallower layers are not. Several stream reaches and nearby wells may occur in a single cell, precluding any meaningful modeling of the surface water and groundwater interactions between the individual features. We propose to replace the upper MODFLOW layer or layers, in which the surface water and groundwater interactions occur, by an analytic element model (GFLOW) that does not employ a model grid; instead, it represents wells and surface waters directly by the use of point-sinks and line-sinks. For many practical cases it suffices to provide GFLOW with the vertical leakage rates calculated in the original coarse MODFLOW model in order to obtain a good representation of surface water and groundwater interactions. However, when the combined transmissivities in the deeper (MODFLOW) layers dominate, the accuracy of the GFLOW solution diminishes. For those cases, an iterative coupling procedure, whereby the leakages between the GFLOW and MODFLOW model are updated, appreciably improves the overall solution, albeit at considerable computational cost. The coupled GFLOW,MODFLOW model is applicable to relatively large areas, in many cases to the entire model domain, thus forming an attractive alternative to local grid refinement or inset models. [source]

Floodplain friction parameterization in two-dimensional river flood models using vegetation heights derived from airborne scanning laser altimetry

HYDROLOGICAL PROCESSES, Issue 9 2003
David C. Mason
Abstract Two-dimensional (2-D) hydraulic models are currently at the forefront of research into river flood inundation prediction. Airborne scanning laser altimetry is an important new data source that can provide such models with spatially distributed floodplain topography together with vegetation heights for parameterization of model friction. The paper investigates how vegetation height data can be used to realize the currently unexploited potential of 2-D flood models to specify a friction factor at each node of the finite element model mesh. The only vegetation attribute required in the estimation of floodplain node friction factors is vegetation height. Different sets of flow resistance equations are used to model channel sediment, short vegetation, and tall and intermediate vegetation. The scheme was tested in a modelling study of a flood event that occurred on the River Severn, UK, in October 1998. A synthetic aperture radar image acquired during the flood provided an observed flood extent against which to validate the predicted extent. The modelled flood extent using variable friction was found to agree with the observed extent almost everywhere within the model domain. The variable-friction model has the considerable advantage that it makes unnecessary the unphysical fitting of floodplain and channel friction factors required in the traditional approach to model calibration. Copyright © 2003 John Wiley & Sons, Ltd. [source]

Incorporating spatially variable bottom stress and Coriolis force into 2D, a posteriori, unstructured mesh generation for shallow water models

INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, Issue 3 2009
D. Michael Parrish
Abstract An enhanced version of our localized truncation error analysis with complex derivatives (LTEA,CD ) a posteriori approach to computing target element sizes for tidal, shallow water flow, LTEA+CD , is applied to the Western North Atlantic Tidal model domain. The LTEA + CD method utilizes localized truncation error estimates of the shallow water momentum equations and builds upon LTEA and LTEA,CD-based techniques by including: (1) velocity fields from a nonlinear simulation with complete constituent forcing; (2) spatially variable bottom stress; and (3) Coriolis force. Use of complex derivatives in this case results in a simple truncation error expression, and the ability to compute localized truncation errors using difference equations that employ only seven to eight computational points. The compact difference molecules allow the computation of truncation error estimates and target element sizes throughout the domain, including along the boundary; this fact, along with inclusion of locally variable bottom stress and Coriolis force, constitute significant advancements beyond the capabilities of LTEA. The goal of LTEA + CD is to drive the truncation error to a more uniform, domain-wide value by adjusting element sizes (we apply LTEA + CD by re-meshing the entire domain, not by moving nodes). We find that LTEA + CD can produce a mesh that is comprised of fewer nodes and elements than an initial high-resolution mesh while performing as well as the initial mesh when considering the resynthesized tidal signals (elevations). Copyright © 2008 John Wiley & Sons, Ltd. [source]

Consistency of quasi-static boundary value problems in electromagnetic modelling

INTERNATIONAL JOURNAL OF NUMERICAL MODELLING: ELECTRONIC NETWORKS, DEVICES AND FIELDS, Issue 6 2006
S. Suuriniemi
Abstract This paper analyses the possibility to computationally settle consistency of field problems, especially those arising from electromagnetic modelling: the electromagnetic theory is expressed in field-oriented concepts, which allow for formulation of boundary value problems with no solution at all or infinitely many solutions. This possibility of such inconsistent problems decreases the productivity of electromagnetic design software. This paper relates the consistency question to topological aspects of the model domain, and proposes a scheme for routine computation of the relevant topological aspects of electromagnetic models. Copyright © 2006 John Wiley & Sons, Ltd. [source]

Improving Opportunities for Regulatory Acceptance of QSARs: The Importance of Model Domain, Uncertainty, Validity and Predictability

Multi-scale modelling of two-phase,two-component processes in heterogeneous porous media

NUMERICAL LINEAR ALGEBRA WITH APPLICATIONS, Issue 9 2006
J. Niessner
Abstract This work deals with flow and transport phenomena in porous media, which occur on different space and time scales. Additionally, the porous medium itself is heterogeneous where the heterogeneities occur on all spatial scales. We consider a large domain with randomly distributed heterogeneities where complex two-phase,two-component processes are relevant only in a small (local) subdomain. This subdomain needs fine resolution as the complex processes are governed by small-scale effects. For a comprehensive fine-scale model taking into account two-phase,two-component processes as well as heterogeneities in the whole (global) model domain, data collection is expensive and computational time is high. Therefore, we developed a multi-scale concept where on the one hand, the global flow field influences the local two-phase,two-component processes on the fine scale. On the other hand, a coarse-scale saturation equation is solved where the effects of the fine-scale two-phase,two-component processes in the subdomain are captured by source/sink terms and the effects of fine-scale heterogeneities by a macrodispersion term. Copyright © 2006 John Wiley & Sons, Ltd. [source]

Sources of water vapour contributing to the Elbe flood in August 2002,A tagging study in a mesoscale model

THE QUARTERLY JOURNAL OF THE ROYAL METEOROLOGICAL SOCIETY, Issue 638 2009
H. Sodemann
Abstract In this study we investigate the contribution of various moisture sources to the Elbe flood that occurred in Central Europe during August 2002. An 8-day simulation with the mesoscale numerical weather prediction model CHRM, including newly implemented water vapour tracers, has been performed. According to the simulation, rather than drawing moisture from one single dominant source region, water vapour from widely separated moisture sources contributed to the extreme precipitation in the most affected area, notably at distinct, subsequent periods of time, and each in significant amounts. These moisture sources include the Atlantic and Mediterranean ocean areas inside the model domain, evapotranspiration from land areas, and long-range advection from subtropical areas outside the model domain. The results highlight the importance of the concurrent upper-level circulation and the mesoscale flow structures associated with the cyclone for producing extreme precipitation in parts of Germany, Austria, and the Czech Republic during that period. Furthermore, the numerical and technical problems of implementing water vapour tracers into a limited-area model are discussed, including conservative tracer advection, initialization, boundary treatment, and the handling of precipitation parametrizations. An evaluation of the consistency of the method in terms of water vapour, cloud water, and precipitation is provided, with generally satisfying results. The model with its detailed water vapour tracer implementation can now be used for further case-studies and climatological simulations, and serve as a reference for evaluating the performance of other moisture tracking methods, such as those based on backward trajectories. Copyright © 2009 Royal Meteorological Society [source]

Late Holocene dispersal and accumulation of terrigenous sediment on Poverty Shelf, New Zealand

BASIN RESEARCH, Issue 2 2009
A. J. Kettner
ABSTRACT We use coupled numerical models (HydroTrend and SedFlux) to investigate the dispersal and accumulation of sediment on Poverty Shelf, North Island, New Zealand, during the past 3 kyr. In this timeframe, we estimate that the Waipaoa River system delivered ,10 Gt of sediment to Poverty Shelf, 5,10% of which was transported to the outer shelf and continental slope. The domain of the two-dimensional model (SedFlux) is representative of a 30 km traverse across the shelf. Comparing the model output with seismic reflection data and a core obtained from the middle shelf shows that, without extensively modifying the governing equations or imposing unrealistic conditions on the model domain, it is possible to replicate the geometry, grain size and accumulation rate of the late Holocene mud deposit. The replicate depositional record responds to naturally and anthropogenically induced vegetation disturbance, as well as to storms forced by long-period climatic events simulated entirely within the model domain. The model output also suggests that long-term fluctuations in the amount and caliber of river sediment discharge, promoted by wholesale changes in the catchment environment, may be translated directly to the shelf depositional record, whereas short-term fluctuations conditioned by event magnitude and frequency are not. Thus on Poverty Shelf, as well as in depocenters on other active continental margins which retain a much smaller proportion of the terrigeneous sediment delivered to them, flood-generated event beds are not commonplace features in the high-resolution sedimentary record. This is because the shelf sedimentary record is influenced more by the energy available to the coastal ocean which helps keep the sediment in suspension and facilitates its dispersal, than by basin hydrometeorology which determines the turbidity and velocity of the river plume. [source]